RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ASAH2Q9NR71 780 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 WWOXQ9NZC7 414 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 VWA7Q9Y334 891 aa10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FAM32AQ9Y421 112 aaKnown RBP10.67□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MAGEB16A2A368 324 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MRASO14807 208 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 VILLO15195 856 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RFPL1O75677 317 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GOT2P00505 430 aaKnown RBP10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CKMT2P17540 419 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CNTFP26441 200 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GGT5P36269 586 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SAMD4BQ5PRF9 694 aaKnown RBP10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ARMC4Q5T2S8 1044 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NEK5Q6P3R8 708 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CRTC3Q6UUV7 619 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 KCTD8Q6ZWB6 473 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NEK10Q6ZWH5 1172 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 C11orf74Q86VG3 221 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 OFCC1Q8IZS5 231 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PARP8Q8N3A8 854 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RP9Q8TA86 221 aaKnown RBP10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 HM13Q8TCT9 377 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SORCS1Q8WY21 1168 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SLC2A13Q96QE2 648 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PKP2Q99959 881 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 HERC2P3Q9BVR0 1158 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MTG2Q9H4K7 406 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RCOR3Q9P2K3 495 aaPredicted RBP10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TMEM98Q9Y2Y6 226 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 A0A088AWK7 358 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 VPS26AO75436 327 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 KCNH1O95259 989 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MED26O95402 600 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 LDLRP01130 860 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 XRCC1P18887 633 aaPredicted RBP10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CCNCP24863 283 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ARSDP51689 593 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TGFBIQ15582 683 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 STK32CQ86UX6 486 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CDYL2Q8N8U2 506 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TMEM174Q8WUU8 243 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 BIRC8Q96P09 236 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SLC22A12Q96S37 553 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SLC9A7Q96T83 725 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 BTBD3Q9Y2F9 522 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MRPS23Q9Y3D9 190 aaKnown RBP10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SYN3O14994 580 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 INPPL1O15357 1258 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 LINC00032P0C843 101 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TCEA1P23193 301 aaKnown RBP10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PCSK6P29122 969 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 STK19P49842 368 aaPredicted RBP10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GSTM4Q03013 218 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 UBE3AQ05086 875 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GPR17Q13304 367 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DNASE1L3Q13609 305 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CYP51A1Q16850 503 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZFP69Q49AA0 526 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 AASDHQ4L235 1098 aaPredicted RBP10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PRR23CQ6ZRP0 262 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ADCK2Q7Z695 626 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NTAN1Q96AB6 310 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GPR21Q99679 349 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RHOJQ9H4E5 214 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZNF696Q9H7X3 374 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ABCB8Q9NUT2 735 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.66□□□□□ -0.74e-7■■□□□ 11.8
MSH5-SAPCD1-207ENST00000493662 EBF1Q9UH73 591 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TLR6Q9Y2C9 796 aa10.66□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FOCADQ5VW36 1801 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CCDC162PA2VCL2 907 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZBTB14O43829 449 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ITGAXP20702 1163 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 IL12AP29459 219 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CSKP41240 450 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 THOP1P52888 689 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 LIMK2P53671 638 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TRIP4Q15650 581 aaPredicted RBP10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PITRM1Q5JRX3 1037 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SIRPB2Q5JXA9 342 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DUS1LQ6P1R4 473 aaKnown RBP10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DCDC5Q6ZRR9 648 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FRMD7Q6ZUT3 714 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FBXO39Q8N4B4 442 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CBR4Q8N4T8 237 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 OR4L1Q8NH43 312 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CYB5D2Q8WUJ1 264 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 OSCP1Q8WVF1 389 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NPAS2Q99743 824 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SMOC2Q9H3U7 446 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 EXOSC4Q9NPD3 245 aaKnown RBP10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 HPS4Q9NQG7 708 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SACM1LQ9NTJ5 587 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 HCFC1R1Q9NWW0 138 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TCAF1Q9Y4C2 921 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 LRRC14BA6NHZ5 514 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 UBXN8O00124 270 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NIPSNAP2O75323 286 aa10.65□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FCGR1AP12314 374 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms