RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 CDK5RAP1Q96SZ6 601 aaKnown RBP4.62□□□□□ -1.67
VPS13A-212ENST00000493341 B3GNT4Q9C0J1 378 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 TUFT1Q9NNX1 390 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 PARD6AQ9NPB6 346 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 SPAG4Q9NPE6 437 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 POLLQ9UGP5 575 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 A0A087WV48 116 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 EIF3DO15371 548 aaKnown RBP eCLIP4.62□□□□□ -1.675e-6■□□□□ 10.7
VPS13A-212ENST00000493341 PRPSAP2O60256 369 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 MOSPD3O75425 235 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 TOMM70O94826 608 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 MOCS3O95396 460 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 GUCA1CO95843 209 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 EGFP01133 1207 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 UROSP10746 265 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 EEF1B2P24534 225 aaKnown RBP4.62□□□□□ -1.67
VPS13A-212ENST00000493341 CHATP28329 748 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 SOAT1P35610 550 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 PPP3CCP48454 512 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 CDH12P55289 794 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 TMEM119Q4V9L6 283 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 MIDNQ504T8 468 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 FIGLAQ6QHK4 219 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 C1QL4Q86Z23 238 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 CNTN4Q8IWV2 1026 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 EXD1Q8NHP7 514 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 OCC1Q8TAD7 63 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 MIB2Q96AX9 1013 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 ERLEC1Q96DZ1 483 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 KRTAP9-2Q9BYQ4 174 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 TMEM39BQ9GZU3 492 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 C1orf21Q9H246 121 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 MAGIXQ9H6Y5 334 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 TBC1D17Q9HA65 648 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 VPS18Q9P253 973 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 SERGEFQ9UGK8 458 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 TTC7AQ9ULT0 858 aaPredicted RBP4.62□□□□□ -1.67
VPS13A-212ENST00000493341 B3GALT5Q9Y2C3 310 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 TRIM17Q9Y577 477 aa4.62□□□□□ -1.67
VPS13A-212ENST00000493341 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.61□□□□□ -1.67
VPS13A-212ENST00000493341 NDUFS4O43181 175 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 TXNL1O43396 289 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 VEGFDO43915 354 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 KRT4P19013 534 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 ITIH1P19827 911 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 CTNNB1P35222 781 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 AVPR1AP37288 418 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 RARRES1P49788 294 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 ADARP55265 1226 aaKnown RBP4.61□□□□□ -1.67
VPS13A-212ENST00000493341 SNU13P55769 128 aaKnown RBP4.61□□□□□ -1.67
VPS13A-212ENST00000493341 HNRNPKP61978 463 aaKnown RBP eCLIP4.61□□□□□ -1.67
VPS13A-212ENST00000493341 GAD2Q05329 585 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 ALS2CLQ60I27 953 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 HEPHL1Q6MZM0 1159 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 C15orf39Q6ZRI6 1047 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 FAM57BQ71RH2 274 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 TLK2Q86UE8 772 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 ANKRD20A12PQ8NF67 263 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 ARRDC2Q8TBH0 407 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 APBB2Q92870 758 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 BSCL2Q96G97 398 aaPredicted RBP4.61□□□□□ -1.67
VPS13A-212ENST00000493341 CRAMP1Q96RY5 1269 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 GTPBP2Q9BX10 602 aaKnown RBP4.61□□□□□ -1.67
VPS13A-212ENST00000493341 KRT23Q9C075 422 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 MINDY3Q9H8M7 445 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 SEBOXQ9HB31 216 aaPredicted RBP4.61□□□□□ -1.67
VPS13A-212ENST00000493341 ANO10Q9NW15 660 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 ASB6Q9NWX5 421 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 CPSF3Q9UKF6 684 aaKnown RBP4.61□□□□□ -1.67
VPS13A-212ENST00000493341 BLOC1S6Q9UL45 172 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 RNF150Q9ULK6 438 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 STX8Q9UNK0 236 aa4.61□□□□□ -1.67
VPS13A-212ENST00000493341 TMEM189-UBE2V1I3L0A0 370 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 MEIS2O14770 477 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 MYZAPP0CAP1 466 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 INSRRP14616 1297 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 TCF4P15884 667 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 GNAZP19086 355 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 CD58P19256 250 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 WNT5AP41221 380 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 HSF1Q00613 529 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 UBE2V1Q13404 147 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 TWISTNBQ3B726 338 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 KBTBD12Q3ZCT8 623 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 RNASEH2BQ5TBB1 312 aaKnown RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 GALNT17Q6IS24 598 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 B3GNT6Q6ZMB0 384 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 TMEM182Q6ZP80 229 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 CAMK1DQ8IU85 385 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 MAML2Q8IZL2 1156 aaPredicted RBP4.6□□□□□ -1.67
VPS13A-212ENST00000493341 PSMA8Q8TAA3 256 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 ZNF398Q8TD17 642 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 SPDL1Q96EA4 605 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 GRAMD2BQ96HH9 432 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 ABCG8Q9H221 673 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 KCNN2Q9H2S1 579 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 SMPD4Q9NXE4 827 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 TRPC4Q9UBN4 977 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 FBXW2Q9UKT8 454 aa4.6□□□□□ -1.67
VPS13A-212ENST00000493341 SPAG9O60271 1321 aaKnown RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms