RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 RTP2Q5QGT7 225 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 TTC33Q6PID6 262 aaPredicted RBP17.78■□□□□ 0.44
VIM-206ENST00000487938 GPSM1Q86YR5 675 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 CPNE9Q8IYJ1 553 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 KIAA2013Q8IYS2 634 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 OR52B6Q8NGF0 335 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 CYGBQ8WWM9 190 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 DTNBP1Q96EV8 351 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 CENPNQ96H22 339 aaPredicted RBP17.78■□□□□ 0.44
VIM-206ENST00000487938 ZIC5Q96T25 663 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 HBEGFQ99075 208 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 ADI1Q9BV57 179 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 TDRD1Q9BXT4 1180 aaKnown RBP17.78■□□□□ 0.44
VIM-206ENST00000487938 TRIM54Q9BYV2 358 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.78■□□□□ 0.44
VIM-206ENST00000487938 INTS7Q9NVH2 962 aaKnown RBP17.78■□□□□ 0.44
VIM-206ENST00000487938 AGO1Q9UL18 857 aaKnown RBP17.78■□□□□ 0.44
VIM-206ENST00000487938 RAI2Q9Y5P3 530 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 H3BNC9 293 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 GIPC1O14908 333 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 ZDHHC11BP0C7U3 371 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 ATP5C1P36542 298 aaKnown RBP17.78■□□□□ 0.44
VIM-206ENST00000487938 XKR7Q5GH72 579 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 LPCAT2Q7L5N7 544 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 TAS2R42Q7RTR8 314 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 MFSD2AQ8NA29 543 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 FNDC5Q8NAU1 212 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 OR56A4Q8NGH8 313 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 SPATA17Q96L03 361 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 SEPHS2Q99611 448 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 GKN1Q9NS71 199 aa17.78■□□□□ 0.44
VIM-206ENST00000487938 TCRBV5S2A0A599 114 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 STX16O14662 325 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 ACOX3O15254 700 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 KLK8O60259 260 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 SYNCRIPO60506 623 aaKnown RBP17.77■□□□□ 0.44
VIM-206ENST00000487938 TMCC1O94876 653 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 C1RP00736 705 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 ALDH2P05091 517 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 ATF6P18850 670 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 CR2P20023 1033 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 TM4SF4P48230 202 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 CDH4P55283 916 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 IL2P60568 153 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 CAP1Q01518 475 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 ATP6AP1Q15904 470 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 COQ5Q5HYK3 327 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 NANOGP8Q6NSW7 305 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 PRSS55Q6UWB4 352 aaPredicted RBP17.77■□□□□ 0.44
VIM-206ENST00000487938 LINGO4Q6UY18 593 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 GPRIN3Q6ZVF9 776 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 RALGPS2Q86X27 583 aaPredicted RBP17.77■□□□□ 0.44
VIM-206ENST00000487938 ABI1Q8IZP0 508 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 TMEM199Q8N511 208 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 PCSK9Q8NBP7 692 aaKnown RBP17.77■□□□□ 0.44
VIM-206ENST00000487938 FBXL20Q96IG2 436 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 PLEKHG4BQ96PX9 1271 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 C9orf16Q9BUW7 83 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 NANOGQ9H9S0 305 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 DNMT3LQ9UJW3 386 aa17.77■□□□□ 0.44
VIM-206ENST00000487938 ANKRD66B4E2M5 251 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 EEDO75530 441 aaKnown RBP17.77■□□□□ 0.43
VIM-206ENST00000487938 MLYCDO95822 493 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 KPNA1P52294 538 aaPredicted RBP17.77■□□□□ 0.43
VIM-206ENST00000487938 ERVPABLB-1P60509 514 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 FOXM1Q08050 763 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 AAK1Q2M2I8 961 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 PLA2G4EQ3MJ16 856 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 C5orf22Q49AR2 442 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 PABPC1LQ4VXU2 614 aaKnown RBP17.77■□□□□ 0.43
VIM-206ENST00000487938 C6orf136Q5SQH8 315 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 ACBD5Q5T8D3 534 aaPredicted RBP17.77■□□□□ 0.43
VIM-206ENST00000487938 TXNDC11Q6PKC3 985 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 SLC2A7Q6PXP3 512 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 PACRGLQ8N7B6 248 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 HM13Q8TCT9 377 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 CD200R1Q8TD46 325 aa17.77■□□□□ 0.43
VIM-206ENST00000487938 NUSAP1Q9BXS6 441 aaKnown RBP17.77■□□□□ 0.43
VIM-206ENST00000487938 SOX17Q9H6I2 414 aaPredicted RBP17.77■□□□□ 0.43
VIM-206ENST00000487938 FRMPD3Q5JV73 1810 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 E5RI56 91 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 E2F3O00716 465 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 EI24O14681 340 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 STX7O15400 261 aaKnown RBP17.76■□□□□ 0.43
VIM-206ENST00000487938 KLKB1P03952 638 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 RHOCP08134 193 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 CDK4P11802 303 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 MYF6P23409 242 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 SLC11A1P49279 550 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 SLC11A2P49281 568 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 ACLYP53396 1101 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 PLIN5Q00G26 463 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 Q6ZSR9 355 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 B4GALNT2Q8NHY0 566 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 PROKR1Q8TCW9 393 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 EZH1Q92800 747 aaPredicted RBP17.76■□□□□ 0.43
VIM-206ENST00000487938 C1QTNF3Q9BXJ4 246 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 MARCH5Q9NX47 278 aa17.76■□□□□ 0.43
VIM-206ENST00000487938 LEF1Q9UJU2 399 aaPredicted RBP17.76■□□□□ 0.43
VIM-206ENST00000487938 ARIH1Q9Y4X5 557 aaPredicted RBP17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms