RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TECRLQ5HYJ1 363 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 INTS11Q5TA45 600 aaKnown RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 NOTCH2NLQ7Z3S9 236 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 TRPT1Q86TN4 253 aaKnown RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 GBGT1Q8N5D6 347 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 SLC38A9Q8NBW4 561 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 OR8K5Q8NH50 307 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 ETNPPLQ8TBG4 499 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 ABHD8Q96I13 439 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 SEC62Q99442 399 aaKnown RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 SEPT5Q99719 369 aaPredicted RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 SEMA3CQ99985 751 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 POLR3GLQ9BT43 218 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 FSD1Q9BTV5 496 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 RAB6CQ9H0N0 254 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 SIL1Q9H173 461 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 PDCL3Q9H2J4 239 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 CWC15Q9P013 229 aaKnown RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 B3GALT5Q9Y2C3 310 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 KCNE2Q9Y6J6 123 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 ERCC6Q03468 1493 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 ARAP1Q96P48 1450 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 A0A0G2JNG1 304 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 A0A1W2PPI3 338 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 PCDH7O60245 1069 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 SYNCRIPO60506 623 aaKnown RBP3.63□□□□□ -1.83
VPS41-213ENST00000485955 CLEC3BP05452 202 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 TFAP2AP05549 437 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 ZNF883P0CG24 379 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 ERVK-10P10266 1014 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 HRH2P25021 359 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 BSGP35613 385 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 ERVK11-1P61568 191 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 GNB1P62873 340 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 MRPS34P82930 218 aaKnown RBP3.63□□□□□ -1.83
VPS41-213ENST00000485955 PPIGQ13427 754 aaKnown RBP eCLIP3.63□□□□□ -1.83
VPS41-213ENST00000485955 KIR2DS3Q14952 304 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 KIR2DS5Q14953 304 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 MED22Q15528 200 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 ADIPOQQ15848 244 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 FAM53AQ6NSI3 398 aaPredicted RBP3.63□□□□□ -1.83
VPS41-213ENST00000485955 RBMS3Q6XE24 437 aaKnown RBP3.63□□□□□ -1.83
VPS41-213ENST00000485955 C15orf39Q6ZRI6 1047 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 PM20D2Q8IYS1 436 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 SLC5A8Q8N695 610 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 EMC1Q8N766 993 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 FRMD1Q8N878 549 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 CNBD1Q8NA66 436 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 TAF15Q92804 592 aaKnown RBP eCLIP3.63□□□□□ -1.83
VPS41-213ENST00000485955 SENP5Q96HI0 755 aaPredicted RBP3.63□□□□□ -1.83
VPS41-213ENST00000485955 GFI1Q99684 422 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 SLX1AQ9BQ83 275 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 BARHL1Q9BZE3 327 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 SLC52A3Q9NQ40 469 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 UBA2Q9UBT2 640 aaPredicted RBP3.63□□□□□ -1.83
VPS41-213ENST00000485955 PIAS3Q9Y6X2 628 aa3.63□□□□□ -1.83
VPS41-213ENST00000485955 KIF21AQ7Z4S6 1674 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 KANSL1LA0AUZ9 987 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 HCRTR2O43614 444 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 RTN3O95197 1032 aaPredicted RBP3.62□□□□□ -1.83
VPS41-213ENST00000485955 TSHBP01222 138 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 KRT19P08727 400 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 PRSS56P0CW18 603 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 SELLP14151 372 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 MSH3P20585 1137 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 MCCP23508 829 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 NR2F2P24468 414 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 ACADLP28330 430 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 CHRNB4P30926 498 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 ELF1P32519 619 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 GALCP54803 685 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 MLLT10P55197 1068 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 CD81P60033 236 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 NIPAL4Q0D2K0 466 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 NAB2Q15742 525 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 ZC2HC1CQ53FD0 456 aaPredicted RBP3.62□□□□□ -1.83
VPS41-213ENST00000485955 TSPAN33Q86UF1 283 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 APLFQ8IW19 511 aaPredicted RBP3.62□□□□□ -1.83
VPS41-213ENST00000485955 ARHGAP12Q8IWW6 846 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 PCYOX1LQ8NBM8 494 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 HJURPQ8NCD3 748 aaPredicted RBP3.62□□□□□ -1.83
VPS41-213ENST00000485955 EGLN1Q9GZT9 426 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 BICC1Q9H694 974 aaKnown RBP3.62□□□□□ -1.83
VPS41-213ENST00000485955 EPB41L5Q9HCM4 733 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 PTTG2Q9NZH5 202 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 LIMA1Q9UHB6 759 aaKnown RBP3.62□□□□□ -1.83
VPS41-213ENST00000485955 FBXW11Q9UKB1 542 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 ACAD8Q9UKU7 415 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 TMEM98Q9Y2Y6 226 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 JRKLQ9Y4A0 524 aa3.62□□□□□ -1.83
VPS41-213ENST00000485955 HECW2Q9P2P5 1572 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 A0A1B0GU03 582 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 DUXAA6NLW8 204 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 ANKRD66B4E2M5 251 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 ZNF217O75362 1048 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 PDE9AO76083 593 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 EIF2S1P05198 315 aaKnown RBP3.61□□□□□ -1.83
VPS41-213ENST00000485955 LIPFP07098 398 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 GNB3P16520 340 aa3.61□□□□□ -1.83
VPS41-213ENST00000485955 ZBED6P86452 979 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms