RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ZNF805Q5CZA5 627 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 C9orf50Q5SZB4 431 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 LRIF1Q5T3J3 769 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 EEF1A1P5Q5VTE0 462 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 IRAK1BP1Q5VVH5 260 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 C9orf84Q5VXU9 1444 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 PAPD4Q6PIY7 484 aaKnown RBP5.78□□□□□ -1.48
USP40-213ENST00000483216 C1orf122Q6ZSJ8 110 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 TBC1D1Q86TI0 1168 aaPredicted RBP5.78□□□□□ -1.48
USP40-213ENST00000483216 TSPAN33Q86UF1 283 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 GPR180Q86V85 440 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 ACVR1CQ8NER5 493 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 OR1J2Q8NGS2 313 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 BBS10Q8TAM1 723 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 HMGCLL1Q8TB92 370 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 DNAAF4Q8WXU2 420 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 USP6NLQ92738 828 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 SYT17Q9BSW7 474 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 SCAPERQ9BY12 1400 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 KRT84Q9NSB2 600 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 HCFC1R1Q9NWW0 138 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 MTMR10Q9NXD2 777 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 COPG2Q9UBF2 871 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 STK39Q9UEW8 545 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 RALYQ9UKM9 306 aaKnown RBP5.78□□□□□ -1.48
USP40-213ENST00000483216 CORO1CQ9ULV4 474 aaPredicted RBP5.78□□□□□ -1.48
USP40-213ENST00000483216 LYVE1Q9Y5Y7 322 aa5.78□□□□□ -1.48
USP40-213ENST00000483216 PREX2Q70Z35 1606 aa5.77□□□□□ -1.48
USP40-213ENST00000483216 TEX14Q8IWB6 1497 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 NOTCH4Q99466 2003 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 MSNP26038 577 aaKnown RBP5.77□□□□□ -1.49
USP40-213ENST00000483216 PIK3CAP42336 1068 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 RXRGP48443 463 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 CLDN20P56880 219 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 ARL16Q0P5N6 197 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 JADE1Q6IE81 842 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 KLHL35Q6PF15 583 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 ASB18Q6ZVZ8 466 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 MUC20Q8N307 709 aaPredicted RBP5.77□□□□□ -1.49
USP40-213ENST00000483216 MAB21L3Q8N8X9 362 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 ANKRD52Q8NB46 1076 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 DNASE2BQ8WZ79 361 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 SKA1Q96BD8 255 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 EGLN2Q96KS0 407 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 KRTAP2-2Q9BYT5 123 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 FKRPQ9H9S5 495 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 DLGAP4Q9Y2H0 992 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 KLHL20Q9Y2M5 609 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 OR2W1Q9Y3N9 320 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 ZNF711Q9Y462 761 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 ARHGEF40Q8TER5 1519 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 KDM5DQ9BY66 1539 aa5.77□□□□□ -1.49
USP40-213ENST00000483216 ANKRD50Q9ULJ7 1429 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 KIAA1107Q9UPP5 1409 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 A8MZ25 164 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 ANKRD28O15084 1053 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 ICAM1P05362 532 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 ACADMP11310 421 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 RARGP13631 454 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 TMEM11P17152 192 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 GALCP54803 685 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 ISL1P61371 349 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 PITX1P78337 314 aaPredicted RBP5.76□□□□□ -1.49
USP40-213ENST00000483216 LRMPQ12912 555 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 GTF2H2Q13888 395 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 PCGF3Q3KNV8 242 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 ACCSLQ4AC99 568 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 CCDC30Q5VVM6 783 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 GTF2H2CQ6P1K8 395 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 IKBIPQ70UQ0 350 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 SDCCAG8Q86SQ7 713 aaPredicted RBP5.76□□□□□ -1.49
USP40-213ENST00000483216 IL17RCQ8NAC3 791 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 INPP4AQ96PE3 977 aaPredicted RBP5.76□□□□□ -1.49
USP40-213ENST00000483216 NCAPGQ9BPX3 1015 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 PIGMQ9H3S5 423 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 SH2D4AQ9H788 454 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 R3HDM2Q9Y2K5 976 aaKnown RBP5.76□□□□□ -1.49
USP40-213ENST00000483216 CDC42BPBQ9Y5S2 1711 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 CCDC141Q6ZP82 1450 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 SAMD9LQ8IVG5 1584 aa5.76□□□□□ -1.49
USP40-213ENST00000483216 FRMD3A2A2Y4 597 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 MYO1GB0I1T2 1018 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 IGLV2-11P01706 119 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 HIST1H2ABP04908 130 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 HIST1H2ADP20671 130 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 CAPN3P20807 821 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 ACADLP28330 430 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 PPARGP37231 505 aaPredicted RBP5.75□□□□□ -1.49
USP40-213ENST00000483216 ACSM2AQ08AH3 577 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 CCDC173Q0VFZ6 552 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 SREBF2Q12772 1141 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 CDC16Q13042 620 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 PDE1CQ14123 709 aaPredicted RBP5.75□□□□□ -1.49
USP40-213ENST00000483216 CRYMQ14894 314 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 TMEM35AQ53FP2 167 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 KRTCAP3Q53RY4 240 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 GKAP1Q5VSY0 366 aaPredicted RBP5.75□□□□□ -1.49
USP40-213ENST00000483216 NSUN5P2Q63ZY6 315 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 PMS2CLQ68D20 193 aa5.75□□□□□ -1.49
USP40-213ENST00000483216 TMEM154Q6P9G4 183 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms