RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CERCAMQ5T4B2 595 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 C10orf25Q5T742 122 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 ARHGAP17Q68EM7 881 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 ANO7Q6IWH7 933 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 HEPHL1Q6MZM0 1159 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 RBM43Q6ZSC3 357 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 RRAGAQ7L523 313 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 VASH2Q86V25 355 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 GRAMD2AQ8IUY3 354 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 SYT2Q8N9I0 419 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 NEK11Q8NG66 645 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 OR6B3Q8NGW1 331 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 OR8K5Q8NH50 307 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 DNAJB14Q8TBM8 379 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 DUSP19Q8WTR2 217 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 DDI1Q8WTU0 396 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 MRPS27Q92552 414 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 MAP4K1Q92918 833 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 SMARCE1Q969G3 411 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 EFHD2Q96C19 240 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 LRRC46Q96FV0 321 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 PERPQ96FX8 193 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 MASTLQ96GX5 879 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 TRAPPC9Q96Q05 1148 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 GAL3ST4Q96RP7 486 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 EIF3CQ99613 913 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 THUMPD2Q9BTF0 503 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 NTMT1Q9BV86 223 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 THAP2Q9H0W7 228 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 CHODLQ9H9P2 273 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 MAGEE1Q9HCI5 957 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 RAB20Q9NX57 234 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 SMPD3Q9NY59 655 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 EMC3Q9P0I2 261 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 SPASTQ9UBP0 616 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 ATPIF1Q9UII2 106 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 ANGPTL2Q9UKU9 493 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 FER1L4A9Z1Z3 1794 aa4.85□□□□□ -1.63
CCDC88A-210ENST00000468534 IGKV2D-30A0A075B6S6 120 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 A0A1B0GWJ7 208 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 MFSD2BA6NFX1 497 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 LIPT2A6NK58 231 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ENO4A6NNW6 628 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 SOCS6O14544 535 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ATP2A1O14983 1001 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 PRPF4O43172 522 aaKnown RBP eCLIP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 TGFB1I1O43294 461 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ZNF821O75541 412 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 DDAH2O95865 285 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 OTCP00480 354 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ZFYP08048 801 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 MMP2P08253 660 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 STAG3L3P0CL85 134 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ETS1P14921 441 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 NR2F2P24468 414 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 PTPN4P29074 926 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 AVPR2P30518 371 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC16A2P36021 539 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 CCR10P46092 362 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 MTHFSP49914 203 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 MFAP3P55082 362 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 MYL6P60660 151 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 STX1BP61266 288 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 UBE2IP63279 158 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 GSTO1P78417 241 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ARHGAP19Q14CB8 494 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 CRY2Q49AN0 593 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 TEX35Q5T0J7 233 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 LIN9Q5TKA1 542 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 CACHD1Q5VU97 1274 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ERICH5Q6P6B1 374 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 DDIASQ8IXT1 998 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ELMOD2Q8IZ81 293 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 POC5Q8NA72 575 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ATAD1Q8NBU5 361 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 LPCAT1Q8NF37 534 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 OR9A1PQ8NGU1 263 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 MAFAQ8NHW3 353 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 KBTBD7Q8WVZ9 684 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 EXT2Q93063 718 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 PHF21BQ96EK2 531 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 LBHD1Q9BQE6 289 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 MAGEB5Q9BZ81 275 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 MRPL37Q9BZE1 423 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 CRNKL1Q9BZJ0 848 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 GPR61Q9BZJ8 451 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 ZNF518BQ9C0D4 1074 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 SH2D4AQ9H788 454 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 SYNDIG1Q9H7V2 258 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 IL21RQ9HBE5 538 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 AGPAT3Q9NRZ7 376 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 KLHL9Q9P2J3 617 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 DDX25Q9UHL0 483 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 LEF1Q9UJU2 399 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 INTS6Q9UL03 887 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 USP22Q9UPT9 525 aa4.84□□□□□ -1.63
CCDC88A-210ENST00000468534 FAM47DPA6NHR8 397 aa4.83□□□□□ -1.64
CCDC88A-210ENST00000468534 TRDMT1O14717 391 aaKnown RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms