RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 LRRC45Q96CN5 670 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 PLEKHG4BQ96PX9 1271 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 ZPBPQ9BS86 351 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 TRABDQ9H4I3 376 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 GPN2Q9H9Y4 310 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-206ENST00000466591 TRIM10Q9UDY6 481 aa17.28■□□□□ 0.36
COL7A1-206ENST00000466591 H7C0C1 242 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 STK10O94804 968 aaKnown RBP17.27■□□□□ 0.36
COL7A1-206ENST00000466591 UBXN7O94888 489 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 FAM87AP0C7U9 286 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 PECAM1P16284 738 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-206ENST00000466591 RPL10P27635 214 aaKnown RBP17.27■□□□□ 0.36
COL7A1-206ENST00000466591 CETN2P41208 172 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 ATP5OP48047 213 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 WNT3AP56704 352 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 NLGN4XQ8N0W4 816 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 NLGN4YQ8NFZ3 816 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-206ENST00000466591 BRSK1Q8TDC3 778 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 PMEPA1Q969W9 287 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 TGM7Q96PF1 710 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 VAT1Q99536 393 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 TIMM29Q9BSF4 260 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 EFHD1Q9BUP0 239 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 HACD3Q9P035 362 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 NFKBIL1Q9UBC1 381 aaPredicted RBP17.27■□□□□ 0.36
COL7A1-206ENST00000466591 ALG6Q9Y672 507 aa17.27■□□□□ 0.36
COL7A1-206ENST00000466591 LILRA5A6NI73 299 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 ZNF891A8MT65 544 aaPredicted RBP17.26■□□□□ 0.35
COL7A1-206ENST00000466591 LIFP15018 202 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 AKT1P31749 480 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 SPAM1P38567 509 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 CLCNKAP51800 687 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 ITPRIPL1Q6GPH6 555 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 BORAQ6PGQ7 559 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 FAM151BQ6UXP7 276 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 KATNAL2Q8IYT4 538 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 HTR3CQ8WXA8 447 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 EID2BQ96D98 161 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 VPS35Q96QK1 796 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 HEMGNQ9BXL5 484 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 GOLPH3Q9H4A6 298 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.26■□□□□ 0.35
COL7A1-206ENST00000466591 PCDHA13Q9Y5I0 950 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 SPO11Q9Y5K1 396 aa17.26■□□□□ 0.35
COL7A1-206ENST00000466591 GLYATL1P3A0A0U1RQE8 302 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 HACD1B0YJ81 288 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 AURKAO14965 403 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 CAPN5O15484 640 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-206ENST00000466591 PPFIA2O75334 1257 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 XRCC1P18887 633 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-206ENST00000466591 HLA-DPA1P20036 260 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 MAP4P27816 1152 aaKnown RBP17.25■□□□□ 0.35
COL7A1-206ENST00000466591 HMGCLP35914 325 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 SEPHS1P49903 392 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 DRG2P55039 364 aaKnown RBP17.25■□□□□ 0.35
COL7A1-206ENST00000466591 MC2RQ01718 297 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 TMEM115Q12893 351 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-206ENST00000466591 MPP3Q13368 585 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 ITGA9Q13797 1035 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 PRPSAP1Q14558 356 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 PLCL1Q15111 1095 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 TCEAL1Q15170 157 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 TBR1Q16650 682 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 ATP13A5Q4VNC0 1218 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 SIRPB2Q5JXA9 342 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 LDLRAP1Q5SW96 308 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 TMEM26Q6ZUK4 368 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 TRIT1Q9H3H1 467 aaKnown RBP17.25■□□□□ 0.35
COL7A1-206ENST00000466591 POT1Q9NUX5 634 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 TRHDEQ9UKU6 1024 aa17.25■□□□□ 0.35
COL7A1-206ENST00000466591 ZFC3H1O60293 1989 aaKnown RBP17.25■□□□□ 0.35
COL7A1-206ENST00000466591 hCG_1818297A0A087WSY0 165 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 A6NCN8 305 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 CHUKO15111 745 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 STX7O15400 261 aaKnown RBP17.24■□□□□ 0.35
COL7A1-206ENST00000466591 STK17BO94768 372 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 MSH3P20585 1137 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 PBLDP30039 288 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-206ENST00000466591 ARL4DP49703 201 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 NOMO1Q15155 1222 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 IRGCQ6NXR0 463 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 CYB5D1Q6P9G0 228 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 KLHL35Q6PF15 583 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 ARHGAP22Q7Z5H3 698 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 AMZ2Q86W34 360 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 RASGRP3Q8IV61 690 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 RBM12BQ8IXT5 1001 aaKnown RBP17.24■□□□□ 0.35
COL7A1-206ENST00000466591 CCDC170Q8IYT3 715 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 ZNF567Q8N184 647 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 RTP4Q96DX8 246 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 ZDHHC12Q96GR4 267 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 QKIQ96PU8 341 aaKnown RBP eCLIP17.24■□□□□ 0.35
COL7A1-206ENST00000466591 UCK1Q9HA47 277 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 FBXO8Q9NRD0 319 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 PDP2Q9P2J9 529 aa17.24■□□□□ 0.35
COL7A1-206ENST00000466591 OR52A4PA6NMU1 304 aa17.23■□□□□ 0.35
COL7A1-206ENST00000466591 C2orf81A6NN90 581 aa17.23■□□□□ 0.35
COL7A1-206ENST00000466591 BUD23O43709 281 aaKnown RBP17.23■□□□□ 0.35
COL7A1-206ENST00000466591 ANXA9O76027 345 aa17.23■□□□□ 0.35
COL7A1-206ENST00000466591 EPOP01588 193 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms