RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 GM2AP17900 193 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 SAT1P21673 171 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 RPS3P23396 243 aaKnown RBP eCLIP9.98□□□□□ -0.81
CD44-207ENST00000425428 ARNTP27540 789 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 ADARP55265 1226 aaKnown RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 CLDN2P57739 230 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 MPP1Q00013 466 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 POU4F1Q01851 419 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 PDAP1Q13442 181 aaKnown RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 FGL2Q14314 439 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 PLK5Q496M5 336 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 SYTL3Q4VX76 610 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 TAF1BQ53T94 588 aaPredicted RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 CEP85LQ5SZL2 805 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 CCDC91Q7Z6B0 441 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 ABI3BPQ7Z7G0 1075 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 LRRTM4Q86VH4 590 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 SYT12Q8IV01 421 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 UNC5BQ8IZJ1 945 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 OXR1Q8N573 874 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 PLA2G15Q8NCC3 412 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 ZBTB44Q8NCP5 570 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 OR56A4Q8NGH8 313 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 SLC44A1Q8WWI5 657 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 PIGKQ92643 395 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 ATXN7L3BQ96GX2 97 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 CABS1Q96KC9 395 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 KLF6Q99612 283 aaPredicted RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 RBBP8Q99708 897 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 SLC13A1Q9BZW2 595 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 OR2AG1Q9H205 316 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 GPR34Q9UPC5 381 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 DNMT3AQ9Y6K1 912 aaPredicted RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 K7ESM1 405 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 TLR4O00206 839 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 KMOO15229 486 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 RAD51BO15315 384 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 HRO43593 1189 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 DNAJC6O75061 913 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 RASGRP1O95267 797 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 TRIM16O95361 564 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 S1PR4O95977 384 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 AHSGP02765 367 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 APOA4P06727 396 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 STMN1P16949 149 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 RGS4P49798 205 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 CDKN1CP49918 316 aaPredicted RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 SERPINB8P50452 374 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 PLOD1Q02809 727 aaPredicted RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 PPARDQ03181 441 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 DNAJC3Q13217 504 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 USP10Q14694 798 aaKnown RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 DUOXA1Q1HG43 343 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 INSCQ1MX18 579 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 TMEM220Q6QAJ8 160 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 ADGRD1Q6QNK2 874 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 MACC1Q6ZN28 852 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 DET1Q7L5Y6 550 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 OTOAQ7RTW8 1153 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 LDB1Q86U70 411 aaPredicted RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 TDRPQ86YL5 185 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 PIANPQ8IYJ0 282 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 TMEM145Q8NBT3 493 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 NELL1Q92832 810 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 FUBP1Q96AE4 644 aaKnown RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 SLC6A18Q96N87 628 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 LRFN3Q9BTN0 628 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 KCNH6Q9H252 994 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 SYTL2Q9HCH5 934 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 TM9SF3Q9HD45 589 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 MARCH4Q9P2E8 410 aaPredicted RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 TBK1Q9UHD2 729 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 TRMT6Q9UJA5 497 aaKnown RBP9.98□□□□□ -0.81
CD44-207ENST00000425428 GMEB2Q9UKD1 530 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 VWA7Q9Y334 891 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 GPSM3Q9Y4H4 160 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 RALGAPA1Q6GYQ0 2036 aa9.98□□□□□ -0.81
CD44-207ENST00000425428 PI4KAP42356 2102 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 FAM95CA0A1B0GW59 222 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 POM121BA6NF01 834 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 DLL1O00548 723 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 GAPDHSO14556 408 aaPredicted RBP9.97□□□□□ -0.81
CD44-207ENST00000425428 GRID2O43424 1007 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 DFNA5O60443 496 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 HAUS5O94927 633 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 MT-ND3P03897 115 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 CFIP05156 583 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 SYPP08247 313 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 ITGA2BP08514 1039 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 ITPKAP23677 461 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 MAOBP27338 520 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 CRABP2P29373 138 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 TYK2P29597 1187 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 SLCO1A2P46721 670 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 KPNA2P52292 529 aaKnown RBP9.97□□□□□ -0.81
CD44-207ENST00000425428 LIMK2P53671 638 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 ATXN3P54252 364 aaPredicted RBP9.97□□□□□ -0.81
CD44-207ENST00000425428 PFN3P60673 137 aa9.97□□□□□ -0.81
CD44-207ENST00000425428 SRSF5Q13243 272 aaKnown RBP9.97□□□□□ -0.81
CD44-207ENST00000425428 RASA2Q15283 850 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms