RNA–Protein interactions for RNA: ENST00000425319.1

HLA-DQB3-203, Transcript of major histocompatibility complex, class II, DQ beta 3, humanhuman

BASIC

Gene HLA-DQB3, Length 356 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB3-203ENST00000425319 QPCTQ16769 361 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CRTC3Q6UUV7 619 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 WASH2PQ6VEQ5 465 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CYP4V2Q6ZWL3 525 aaPredicted RBP12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 BZW1Q7L1Q6 419 aaKnown RBP12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SYVN1Q86TM6 617 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 OR8K5Q8NH50 307 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SSC4DQ8WTU2 575 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 KLHL6Q8WZ60 621 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 IQCDQ96DY2 449 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CD180Q99467 661 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 ZNF670Q9BS34 389 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SYT11Q9BT88 431 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 NUP85Q9BW27 656 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 TRIM7Q9C029 511 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SLC7A5P2Q9GIP4 190 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 RAB33BQ9H082 229 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 FANCEQ9HB96 536 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 WASH6PQ9NQA3 447 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SIDT1Q9NXL6 827 aaKnown RBP12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 TMEM63CQ9P1W3 806 aa12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CNOT6Q9ULM6 557 aaKnown RBP12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 FARSAQ9Y285 508 aaKnown RBP12.07□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SPTA1P02549 2419 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CLEC18AA5D8T8 446 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 FADS2P1A8MWK0 482 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SKILP12757 684 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 ZFXP17010 805 aaPredicted RBP12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 NELFEP18615 380 aaKnown RBP12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 RPL10P27635 214 aaKnown RBP12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 PTPN4P29074 926 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 GJC1P36383 396 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 GFERP55789 205 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 DCDC1P59894 354 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 PRKAA1Q13131 559 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 TUBB3Q13509 450 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 KRT33BQ14525 404 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SEPT7Q16181 437 aaKnown RBP12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 ATP1A1-AS1Q5TC04 95 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 AGAP9Q5VTM2 703 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 ALS2CLQ60I27 953 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CLEC18BQ6UXF7 455 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 FAM92BQ6ZTR7 304 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 ADGRG6Q86SQ4 1221 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 NT5DC3Q86UY8 548 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CLEC18CQ8NCF0 446 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 ARRDC2Q8TBH0 407 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SLC40A1Q9NP59 571 aa12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 PLEKHB1Q9UF11 243 aaPredicted RBP12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 PCDHGA9Q9Y5G4 932 aaKnown RBP12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 DNMT3AQ9Y6K1 912 aaPredicted RBP12.06□□□□□ -0.48
HLA-DQB3-203ENST00000425319 KLHL33A6NCF5 533 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 GOLGA6L3A6NEY3 463 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 PPP1R12AO14974 1030 aaPredicted RBP12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CHUKO15111 745 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 PRLP01236 227 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 ZNF28P17035 718 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 F8A1P23610 371 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CAPZBP47756 277 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 RRADP55042 308 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 GSDMDP57764 484 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SH3BP2P78314 561 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CDK18Q07002 472 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 AP1B1Q10567 949 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 TMEM115Q12893 351 aaPredicted RBP12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 MMRN1Q13201 1228 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CHRNA6Q15825 494 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 UGT8Q16880 541 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 NCBP2-AS2Q69YL0 99 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 ZNF449Q6P9G9 518 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 RBM43Q6ZSC3 357 aaKnown RBP12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 TMC3Q7Z5M5 1100 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 AMZ2Q86W34 360 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 TRAPPC5Q8IUR0 188 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 TMEM126BQ8IUX1 230 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 RHOT1Q8IXI2 618 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CT55Q8WUE5 264 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SYN2Q92777 582 aaPredicted RBP12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 MR1Q95460 341 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 HDAC11Q96DB2 347 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 BRD8Q9H0E9 1235 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 THAP2Q9H0W7 228 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 TRABDQ9H4I3 376 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 ACTL8Q9H568 366 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 KCND1Q9NSA2 647 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 LMBRD1Q9NUN5 540 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CTTNBP2NLQ9P2B4 639 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 ZNF624Q9P2J8 865 aaPredicted RBP12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 TRIM10Q9UDY6 481 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SHOC2Q9UQ13 582 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 COLEC10Q9Y6Z7 277 aa12.05□□□□□ -0.48
HLA-DQB3-203ENST00000425319 MFSD11O43934 449 aa12.04□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CPNE3O75131 537 aaKnown RBP12.04□□□□□ -0.48
HLA-DQB3-203ENST00000425319 MBD3O95983 291 aa12.04□□□□□ -0.48
HLA-DQB3-203ENST00000425319 IGHEP01854 428 aa12.04□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SLC4A1P02730 911 aa12.04□□□□□ -0.48
HLA-DQB3-203ENST00000425319 SERPING1P05155 500 aa12.04□□□□□ -0.48
HLA-DQB3-203ENST00000425319 HLA-DQB2P05538 268 aa12.04□□□□□ -0.48
HLA-DQB3-203ENST00000425319 CD63P08962 238 aa12.04□□□□□ -0.48
HLA-DQB3-203ENST00000425319 H2AFZP0C0S5 128 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms