RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 TSPAN3O60637 253 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 CKMP06732 381 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 C8BP07358 591 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 FAM58BPP0C7Q3 252 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 ARL1P40616 181 aaPredicted RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 CASP2P42575 452 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 OXCT1P55809 520 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 NFKB2Q00653 900 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 ACVR1Q04771 509 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 PTPRRQ15256 657 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 DCBLD1Q8N8Z6 715 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 PDZD8Q8NEN9 1154 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 FAM110BQ8TC76 370 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 ESAMQ96AP7 390 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 SLCO4A1Q96BD0 722 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 GPR21Q99679 349 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 SMG9Q9H0W8 520 aaKnown RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 BPIFA1Q9NP55 256 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 SARS2Q9NP81 518 aaKnown RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 TMEM181Q9P2C4 612 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 UBA2Q9UBT2 640 aaPredicted RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 SEPT3Q9UH03 358 aa10.59□□□□□ -0.71
CUX1-205ENST00000425244 CNOT6Q9ULM6 557 aaKnown RBP10.59□□□□□ -0.71
CUX1-205ENST00000425244 RFXAPO00287 272 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 BTN3A1O00481 513 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 TPST1O60507 370 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 ECI2O75521 394 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 TNFAIP8O95379 198 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 IGLV3-27P01718 113 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 PIM1P11309 404 aaPredicted RBP10.58□□□□□ -0.72
CUX1-205ENST00000425244 CAPN3P20807 821 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 HOXD9P28356 352 aaPredicted RBP10.58□□□□□ -0.72
CUX1-205ENST00000425244 HSPA13P48723 471 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 AGTR2P50052 363 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 CREMQ03060 361 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 CLCQ05315 142 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 RAD51Q06609 339 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 GPM6BQ13491 265 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 PTPRNQ16849 979 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 ACBD5Q5T8D3 534 aaPredicted RBP10.58□□□□□ -0.72
CUX1-205ENST00000425244 RBM44Q6ZP01 1051 aaKnown RBP10.58□□□□□ -0.72
CUX1-205ENST00000425244 GAREM2Q75VX8 874 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 TMEM150AQ86TG1 271 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 ITIH5Q86UX2 942 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 MYO1HQ8N1T3 1032 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 ELMOD1Q8N336 334 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 GPR150Q8NGU9 434 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 STAG3L4Q8TBR4 150 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 WBP2Q969T9 261 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 NSMCE3Q96MG7 304 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 ATOH8Q96SQ7 321 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 TUBB1Q9H4B7 451 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 PDFQ9HBH1 243 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 TAS2R13Q9NYV9 303 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 GALPQ9UBC7 116 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 CD300AQ9UGN4 299 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 SUN2Q9UH99 717 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 SARDHQ9UL12 918 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 PCDHGC4Q9Y5F7 938 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 A0A1B0GTW7 788 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 C7orf72A4D263 438 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 OR1I1O60431 355 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 EPOP01588 193 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 CKMT2P17540 419 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 PSMC3P17980 439 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 OGNP20774 298 aaKnown RBP10.58□□□□□ -0.72
CUX1-205ENST00000425244 ATP6V1B2P21281 511 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 CORO1AP31146 461 aaKnown RBP10.58□□□□□ -0.72
CUX1-205ENST00000425244 PSMD8P48556 350 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 CLCN4P51793 760 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 DIO3P55073 304 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 SFSWAPQ12872 951 aaKnown RBP10.58□□□□□ -0.72
CUX1-205ENST00000425244 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.58□□□□□ -0.72
CUX1-205ENST00000425244 IFNEQ86WN2 208 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 ST13P5Q8NFI4 369 aaPredicted RBP10.58□□□□□ -0.72
CUX1-205ENST00000425244 MYRFLQ96LU7 910 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 EFHD1Q9BUP0 239 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 PBX4Q9BYU1 374 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 TFB2MQ9H5Q4 396 aaKnown RBP10.58□□□□□ -0.72
CUX1-205ENST00000425244 SYTL2Q9HCH5 934 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 SCUBE2Q9NQ36 999 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 POLG2Q9UHN1 485 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 TBC1D30Q9Y2I9 924 aa10.58□□□□□ -0.72
CUX1-205ENST00000425244 SAC3D1A6NKF1 404 aa10.57□□□□□ -0.72
CUX1-205ENST00000425244 AP1G1O43747 822 aa10.57□□□□□ -0.72
CUX1-205ENST00000425244 ACSL4O60488 711 aa10.57□□□□□ -0.72
CUX1-205ENST00000425244 KERAO60938 352 aa10.57□□□□□ -0.72
CUX1-205ENST00000425244 PENKP01210 267 aaPredicted RBP10.57□□□□□ -0.72
CUX1-205ENST00000425244 ZNF26P17031 533 aaPredicted RBP10.57□□□□□ -0.72
CUX1-205ENST00000425244 HOXB8P17481 243 aaPredicted RBP10.57□□□□□ -0.72
CUX1-205ENST00000425244 LBPP18428 481 aa10.57□□□□□ -0.72
CUX1-205ENST00000425244 PRDX3P30048 256 aaKnown RBP10.57□□□□□ -0.72
CUX1-205ENST00000425244 SLC7A1P30825 629 aa10.57□□□□□ -0.72
CUX1-205ENST00000425244 RPL5P46777 297 aaKnown RBP10.57□□□□□ -0.72
CUX1-205ENST00000425244 ACADVLP49748 655 aa10.57□□□□□ -0.72
CUX1-205ENST00000425244 ZNF140P52738 457 aaPredicted RBP10.57□□□□□ -0.72
CUX1-205ENST00000425244 SMAD3P84022 425 aaKnown RBP10.57□□□□□ -0.72
CUX1-205ENST00000425244 RING1Q06587 406 aa10.57□□□□□ -0.72
CUX1-205ENST00000425244 TNK2Q07912 1038 aa10.57□□□□□ -0.72
CUX1-205ENST00000425244 TRAP1Q12931 704 aaKnown RBP10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms