RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 SLC6A14Q9UN76 642 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 PRSS38A1L453 326 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 SMIM23A6NLE4 172 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 H3BMM5 538 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 GAPDHSO14556 408 aaPredicted RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 PRMT5O14744 637 aaPredicted RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 VILLO15195 856 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 KMOO15229 486 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 CER1O95813 267 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 SOD1P00441 154 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 LMNAP02545 664 aaKnown RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 FTH1P02794 183 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 RETP07949 1114 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 ABHD2P08910 425 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 HOXC4P09017 264 aaPredicted RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 ATP1B2P14415 290 aaPredicted RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 HOXB3P14651 431 aaPredicted RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 SAT1P21673 171 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 FMO4P31512 558 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 TRIM23P36406 574 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 ARCN1P48444 511 aaKnown RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 ARRB1P49407 418 aaPredicted RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 NXPH1P58417 271 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 GPX6P59796 221 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 SRP54P61011 504 aaKnown RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 MPP1Q00013 466 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 FRG1Q14331 258 aaKnown RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 TCEA2Q15560 299 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 CCDC6Q16204 474 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 KBTBD12Q3ZCT8 623 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 ZNF648Q5T619 568 aaPredicted RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 LGSNQ5TDP6 509 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 TMEM220Q6QAJ8 160 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 CHST15Q7LFX5 561 aaPredicted RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 LRRC6Q86X45 466 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 CILP2Q8IUL8 1156 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 DENND6AQ8IWF6 608 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 PIANPQ8IYJ0 282 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 GPATCH11Q8N954 259 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 AENQ8WTP8 325 aaKnown RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 SCG3Q8WXD2 468 aaKnown RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 SGSM3Q96HU1 749 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 ELMO2Q96JJ3 720 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 PANX3Q96QZ0 392 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 OR2M4Q96R27 311 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 CPNE1Q99829 537 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 WDR83Q9BRX9 315 aaKnown RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 LGR4Q9BXB1 951 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 ACSS3Q9H6R3 686 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 SARS2Q9NP81 518 aaKnown RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 ATXN10Q9UBB4 475 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 APOBEC3BQ9UH17 382 aaKnown RBP8.37□□□□□ -1.07
TRIM48-201ENST00000417545 ANKRD6Q9Y2G4 727 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 CRYL1Q9Y2S2 319 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 PCDHB1Q9Y5F3 818 aa8.37□□□□□ -1.07
TRIM48-201ENST00000417545 ZNF318Q5VUA4 2279 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 TRBV5-4A0A0C4DH59 114 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 SPTY2D1-AS1A0A0U1RR47 76 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 A0A1W2PR77 199 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 TMEM202A6NGA9 273 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 TNFRSF10CO14798 259 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 CTIFO43310 598 aaKnown RBP8.36□□□□□ -1.07
TRIM48-201ENST00000417545 GRID2O43424 1007 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 DNAJC6O75061 913 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 VPS26AO75436 327 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 AP2A2O94973 939 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 TRIM16O95361 564 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 ESR1P03372 595 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 JUNDP17535 347 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 ITGB6P18564 788 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 CHRM3P20309 590 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 PSMA3P25788 255 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 ARNTP27540 789 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 SPRP35270 261 aaPredicted RBP8.36□□□□□ -1.07
TRIM48-201ENST00000417545 HSD17B3P37058 310 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 GP5P40197 560 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 POLD2P49005 469 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 CSE1LP55060 971 aaKnown RBP8.36□□□□□ -1.07
TRIM48-201ENST00000417545 HNRNPKP61978 463 aaKnown RBP eCLIP8.36□□□□□ -1.07
TRIM48-201ENST00000417545 ILF3Q12906 894 aaKnown RBP eCLIP8.36□□□□□ -1.07
TRIM48-201ENST00000417545 CBLBQ13191 982 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 BIRC2Q13490 618 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 BOP1Q14137 746 aaKnown RBP8.36□□□□□ -1.07
TRIM48-201ENST00000417545 SLC29A2Q14542 456 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 SEMA3AQ14563 771 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 TYSND1Q2T9J0 566 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 ZNF542PQ5EBM4 170 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 TEDDM1Q5T9Z0 273 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 FAM45BPQ6NSW5 357 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 UGT3A1Q6NUS8 523 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 PACS1Q6VY07 963 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 ADGRG6Q86SQ4 1221 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 PHACTR4Q8IZ21 702 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 C2CD4AQ8NCU7 369 aaPredicted RBP8.36□□□□□ -1.07
TRIM48-201ENST00000417545 FAM45AQ8TCE6 357 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 SKA2Q8WVK7 121 aaPredicted RBP8.36□□□□□ -1.07
TRIM48-201ENST00000417545 ELMO1Q92556 727 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 TSACCQ96A04 125 aaPredicted RBP8.36□□□□□ -1.07
TRIM48-201ENST00000417545 SGF29Q96ES7 293 aa8.36□□□□□ -1.07
TRIM48-201ENST00000417545 PDXPQ96GD0 296 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms