RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 ZIK1Q3SY52 487 aaPredicted RBP9.71□□□□□ -0.85
CD44-206ENST00000415148 SLC44A4Q53GD3 710 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 CCNYL2Q5T2Q4 361 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 ANKRD34AQ69YU3 496 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 CENPSQ8N2Z9 138 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 SLC15A4Q8N697 577 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 MAGEE2Q8TD90 523 aaPredicted RBP9.71□□□□□ -0.85
CD44-206ENST00000415148 VPS33AQ96AX1 596 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 THAP11Q96EK4 314 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 CDKN2AIPNLQ96HQ2 116 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 SEMA3CQ99985 751 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 MTG1Q9BT17 334 aaPredicted RBP9.71□□□□□ -0.85
CD44-206ENST00000415148 RETREG1Q9H6L5 497 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 OLA1Q9NTK5 396 aaKnown RBP9.71□□□□□ -0.85
CD44-206ENST00000415148 RIC8BQ9NVN3 520 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 IL37Q9NZH6 218 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 SELENONQ9NZV5 590 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 NUDT5Q9UKK9 219 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 VPS9D1Q9Y2B5 631 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 ARL5AQ9Y689 179 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 PLXNA3P51805 1871 aa9.71□□□□□ -0.85
CD44-206ENST00000415148 DOCK4Q8N1I0 1966 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 SNX2O60749 519 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 PRAMEF11O60813 436 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 SERPINB7O75635 380 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 GJB3O75712 270 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 RHOBTB1O94844 696 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 NDST3O95803 873 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 JUNBP17275 347 aaPredicted RBP9.71□□□□□ -0.86
CD44-206ENST00000415148 SHMT2P34897 504 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 POLR2JP52435 117 aaKnown RBP9.71□□□□□ -0.86
CD44-206ENST00000415148 DIO3P55073 304 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 PIGFQ07326 219 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 TRAF2Q12933 501 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 DSC3Q14574 896 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 CBX2Q14781 532 aaPredicted RBP9.71□□□□□ -0.86
CD44-206ENST00000415148 CRY1Q16526 586 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 ZNF829Q3KNS6 432 aaPredicted RBP9.71□□□□□ -0.86
CD44-206ENST00000415148 FUT11Q495W5 492 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 PAN2Q504Q3 1202 aaKnown RBP9.71□□□□□ -0.86
CD44-206ENST00000415148 FBXL22Q6P050 247 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 HID1Q8IV36 788 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 SCN4BQ8IWT1 228 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 CHCHD4Q8N4Q1 142 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 AADATQ8N5Z0 425 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 DPP10Q8N608 796 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 DNAJB14Q8TBM8 379 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 BLOC1S5Q8TDH9 187 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 ACDQ96AP0 544 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 BIRC7Q96CA5 298 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 LRRC3Q9BY71 257 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 CCDC68Q9H2F9 335 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 GMIPQ9P107 970 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 SUN2Q9UH99 717 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 COQ6Q9Y2Z9 468 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 PCDHB3Q9Y5E6 796 aa9.71□□□□□ -0.86
CD44-206ENST00000415148 MYO16Q9Y6X6 1858 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 INPPL1O15357 1258 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 TULP3O75386 442 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 SERPINF2P08697 491 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 C21orf59P57076 290 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 TUBA3CQ13748 450 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 NFE2Q16621 373 aaPredicted RBP9.7□□□□□ -0.86
CD44-206ENST00000415148 SETMARQ53H47 684 aaPredicted RBP9.7□□□□□ -0.86
CD44-206ENST00000415148 PAGE3Q5JUK9 113 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 PAQR3Q6TCH7 311 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 AFTPHQ6ULP2 937 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 SERINC5Q86VE9 423 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 SNX29P2Q8IUI4 249 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 RIMKLAQ8IXN7 391 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 OR56A4Q8NGH8 313 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 BPIFB1Q8TDL5 484 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 IGSF8Q969P0 613 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 FUBP1Q96AE4 644 aaKnown RBP9.7□□□□□ -0.86
CD44-206ENST00000415148 ISG20Q96AZ6 181 aaKnown RBP9.7□□□□□ -0.86
CD44-206ENST00000415148 COX4I2Q96KJ9 171 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 SLC30A3Q99726 388 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 PTPN18Q99952 460 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 NEURL2Q9BR09 285 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 NANOGQ9H9S0 305 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 SEMA4BQ9NPR2 832 aaPredicted RBP9.7□□□□□ -0.86
CD44-206ENST00000415148 MAGEL2Q9UJ55 1249 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 TDRD15B5MCY1 1934 aaKnown RBP9.7□□□□□ -0.86
CD44-206ENST00000415148 TRPM7Q96QT4 1865 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 FAM92AA1XBS5 289 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 ARNTLO00327 626 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 PFDN6O15212 129 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 ECI2O75521 394 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 PRSS23O95084 383 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 OAZ2O95190 189 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 CPNE6O95741 557 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 IGHA2P01877 340 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 PRSS56P0CW18 603 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 CDH1P12830 882 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 TCF3P15923 654 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 PORP16435 677 aaPredicted RBP9.7□□□□□ -0.86
CD44-206ENST00000415148 TMBIM6P55061 237 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 FKBP1BP68106 108 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 ZNF235Q14590 738 aa9.7□□□□□ -0.86
CD44-206ENST00000415148 CYP2A13Q16696 494 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms