RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 WASH2PQ6VEQ5 465 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 ECHDC2Q86YB7 292 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 OR7G2Q8NG99 324 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 C9orf43Q8TAL5 461 aaPredicted RBP13.32□□□□□ -0.28
USP49-203ENST00000394253 CENPNQ96H22 339 aaPredicted RBP13.32□□□□□ -0.28
USP49-203ENST00000394253 HSPB11Q9Y547 144 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 FAM237BA0A1B0GVD1 139 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 ANKRD33BA6NCL7 494 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 CYB561D2O14569 222 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 MUSKO15146 869 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 NMT2O60551 498 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 BNIP1Q12981 228 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 NIPAL1Q6NVV3 410 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 KCTD8Q6ZWB6 473 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 ACOT1Q86TX2 421 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 FPGTO14772 594 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 IFNW1P05000 195 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 ALDH3B2P48448 385 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 IFI35P80217 286 aaPredicted RBP13.32□□□□□ -0.28
USP49-203ENST00000394253 EIPR1Q53HC9 387 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 RNF220Q5VTB9 566 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 OGFOD2Q6N063 350 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 EFCAB3Q8N7B9 438 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 ZNF570Q96NI8 536 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 BRD7Q9NPI1 651 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.32□□□□□ -0.282e-6■■■□□ 19.2
USP49-203ENST00000394253 CAPN6Q9Y6Q1 641 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 HHLA1C9JL84 531 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 DDX6P26196 483 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP49-203ENST00000394253 MC1RQ01726 317 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 TIGD6Q17RP2 521 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 GPRC6AQ5T6X5 926 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 MTFR2Q6P444 385 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 LDHDQ86WU2 507 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 EGFL6Q8IUX8 553 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 FAM83DQ9H4H8 585 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 DCP1AQ9NPI6 582 aaPredicted RBP13.32□□□□□ -0.28
USP49-203ENST00000394253 URODP06132 367 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 TSHRP16473 764 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 PPP3CAQ08209 521 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 ESX1Q8N693 406 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 HTATIP2Q9BUP3 242 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 CCDC106Q9BWC9 280 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 MYNNQ9NPC7 610 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 TUBE1Q9UJT0 475 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 U3KQV3 271 aa13.32□□□□□ -0.28
USP49-203ENST00000394253 C6orf222P0C671 652 aaPredicted RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 RBL1P28749 1068 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 DCST2Q5T1A1 773 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 C3orf33Q6P1S2 294 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 ZNF529Q6P280 563 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 SLC37A3Q8NCC5 494 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 DNASE1L2Q92874 299 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 GDF3Q9NR23 364 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 SNTG1Q9NSN8 517 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 NARFQ9UHQ1 456 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 SCN1AP35498 2009 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 SH3BGRLO75368 114 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 THP07101 528 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 GRIA2P42262 883 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 MAGEA11P43364 429 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 TBX4P57082 545 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 NUP54Q7Z3B4 507 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 CSGALNACT1Q8TDX6 532 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 HERC2P3Q9BVR0 1158 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 EGFL7Q9UHF1 273 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 A8MVJ9 347 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 TRAFD1O14545 582 aaPredicted RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 TSPAN15O95858 294 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 GTF2F2P13984 249 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 MXD1Q05195 221 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 ADIGQ0VDE8 80 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 DPF2Q92785 391 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 TMEM176AQ96HP8 235 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 TRBC1P01850 177 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 PRKACAP17612 351 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 GBX2P52951 348 aaPredicted RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 DNASE1L3Q13609 305 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 FBXL19Q6PCT2 694 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 S100A16Q96FQ6 103 aaKnown RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 CERS2Q96G23 380 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 BARX2Q9UMQ3 279 aaPredicted RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 SLC9A3R1O14745 358 aaPredicted RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 PRAMEF12O95522 483 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 CD247P20963 164 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 GLDCP23378 1020 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 ERFEQ4G0M1 354 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 RBM48Q5RL73 367 aaKnown RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 CPNE9Q8IYJ1 553 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 ALG2Q9H553 416 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 SPON1Q9HCB6 807 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 SPG21Q9NZD8 308 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 PALLDQ8WX93 1383 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 NEPROQ6NW34 567 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 TUBA1CQ9BQE3 449 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 CHD3Q12873 2000 aaKnown RBP13.31□□□□□ -0.28
USP49-203ENST00000394253 E9PAM4 449 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 TNFRSF11BO00300 401 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 FOXN1O15353 648 aa13.31□□□□□ -0.28
USP49-203ENST00000394253 UPP2O95045 317 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms