RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 FOXM1Q08050 763 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 WSCD1Q658N2 575 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 SLC27A1Q6PCB7 646 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 SLC22A16Q86VW1 577 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 HS3ST5Q8IZT8 346 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 PSMA8Q8TAA3 256 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 PTCD2Q8WV60 388 aaKnown RBP13.62□□□□□ -0.23
SYNE3-201ENST00000334258 FIG4Q92562 907 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 HTRA1Q92743 480 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 OSMRQ99650 979 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 TUBB1Q9H4B7 451 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 ATP13A3Q9H7F0 1226 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 SIAEQ9HAT2 523 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 SCHIP1Q9P0W5 487 aaPredicted RBP13.62□□□□□ -0.23
SYNE3-201ENST00000334258 GJD2Q9UKL4 321 aa13.62□□□□□ -0.23
SYNE3-201ENST00000334258 NCF1BA6NI72 391 aaPredicted RBP13.61□□□□□ -0.23
SYNE3-201ENST00000334258 NCF1CA8MVU1 366 aaPredicted RBP13.61□□□□□ -0.23
SYNE3-201ENST00000334258 GSTA4O15217 222 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 JRKO75564 520 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 C1RP00736 705 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 ALPLP05186 524 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 NCF1P14598 390 aaPredicted RBP13.61□□□□□ -0.23
SYNE3-201ENST00000334258 MTPNP58546 118 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 DAOAP59103 153 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 IFITM3Q01628 133 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 SCAPQ12770 1279 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 INAVAQ3KP66 663 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 SPESP1Q6UW49 350 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 PROSER1Q86XN7 944 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 SH3RF2Q8TEC5 729 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 HDAC2Q92769 488 aaKnown RBP13.61□□□□□ -0.23
SYNE3-201ENST00000334258 L3HYPDHQ96EM0 354 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 DACH2Q96NX9 599 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 NOL6Q9H6R4 1146 aaKnown RBP13.61□□□□□ -0.23
SYNE3-201ENST00000334258 DERAQ9Y315 318 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 SMIM28A0A1B0GU29 152 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 MATN4O95460 622 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 F9P00740 461 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 HLA-DQB2P05538 268 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 LAPTM5Q13571 262 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 DGUOKQ16854 277 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 PLEKHH3Q7Z736 793 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 CAPSLQ8WWF8 208 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 BHMTQ93088 406 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 FAM118AQ9NWS6 357 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 ENPP5Q9UJA9 477 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 CITO14578 2027 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 H0Y858 1186 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 HS6ST1O60243 411 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 SNX2O60749 519 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 CCNCP24863 283 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 HRH2P25021 359 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 POLR2JP52435 117 aaKnown RBP13.61□□□□□ -0.23
SYNE3-201ENST00000334258 NKX2-5P52952 324 aaPredicted RBP13.61□□□□□ -0.23
SYNE3-201ENST00000334258 EEFSECP57772 596 aaKnown RBP13.61□□□□□ -0.23
SYNE3-201ENST00000334258 CD47Q08722 323 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 ZBTB6Q15916 424 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 TMEM236Q5W0B7 351 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 GPRIN1Q7Z2K8 1008 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 SCML4Q8N228 414 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 DCBLD1Q8N8Z6 715 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 RORBQ92753 470 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 ZNF419Q96HQ0 510 aaPredicted RBP13.61□□□□□ -0.23
SYNE3-201ENST00000334258 ASB2Q96Q27 587 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 NTN4Q9HB63 628 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 TLR9Q9NR96 1032 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 ABCB10Q9NRK6 738 aa13.61□□□□□ -0.23
SYNE3-201ENST00000334258 TIMM13Q9Y5L4 95 aaPredicted RBP13.61□□□□□ -0.23
SYNE3-201ENST00000334258 TYW5A2RUC4 315 aaKnown RBP13.6□□□□□ -0.23
SYNE3-201ENST00000334258 SOAT2O75908 522 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 CHEK2O96017 543 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 S100BP04271 92 aaPredicted RBP13.6□□□□□ -0.23
SYNE3-201ENST00000334258 CDH1P12830 882 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 MAXP61244 160 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 VBP1P61758 197 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 SF3B4Q15427 424 aaKnown RBP eCLIP13.6□□□□□ -0.232e-7■■□□□ 14.1
SYNE3-201ENST00000334258 SV2CQ496J9 727 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 CCSAPQ6IQ19 270 aaPredicted RBP13.6□□□□□ -0.23
SYNE3-201ENST00000334258 PAQR9Q6ZVX9 377 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 PTRH1Q86Y79 214 aaKnown RBP13.6□□□□□ -0.23
SYNE3-201ENST00000334258 CILP2Q8IUL8 1156 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 PAPD5Q8NDF8 572 aaKnown RBP13.6□□□□□ -0.23
SYNE3-201ENST00000334258 CHDHQ8NE62 594 aaPredicted RBP13.6□□□□□ -0.23
SYNE3-201ENST00000334258 MRGPRX2Q96LB1 330 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 C16orf70Q9BSU1 422 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 LRRC3Q9BY71 257 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 MRM3Q9HC36 420 aaKnown RBP13.6□□□□□ -0.23
SYNE3-201ENST00000334258 KLQ9UEF7 1012 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 A0A1B0GTL3 188 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 A6NL46 340 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 PSMD11O00231 422 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 XPNPEP2O43895 674 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 UGT2B11O75310 529 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 CNTN5O94779 1100 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 CST1P01037 141 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 TCEA1P23193 301 aaKnown RBP13.6□□□□□ -0.23
SYNE3-201ENST00000334258 PSMB9P28065 219 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 SERPINH1P50454 418 aaKnown RBP13.6□□□□□ -0.23
SYNE3-201ENST00000334258 IL5RAQ01344 420 aa13.6□□□□□ -0.23
SYNE3-201ENST00000334258 KCNAB2Q13303 367 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms