RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 AFTPHQ6ULP2 937 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 USP45Q70EL2 814 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 MTSS1LQ765P7 747 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 TRMT11Q7Z4G4 463 aaKnown RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 DENND1CQ8IV53 801 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 OR8H3Q8N146 312 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 OSGEPL1Q9H4B0 414 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 SPG21Q9NZD8 308 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 AQP12BA6NM10 295 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 KPNA5O15131 536 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 ZW10O43264 779 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 SCELO95171 688 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 METTL18O95568 372 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 ZBTB48P10074 688 aaPredicted RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 MAPK8P45983 427 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 GBE1Q04446 702 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 TMEM214Q6NUQ4 689 aaKnown RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 AQP12AQ8IXF9 295 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 PHACTR4Q8IZ21 702 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 SMG8Q8ND04 991 aaKnown RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 GFM1Q96RP9 751 aaKnown RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 RNF38Q9H0F5 515 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 BCAS3Q9H6U6 928 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 MTRRQ9UBK8 725 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 PTBP2Q9UKA9 531 aaKnown RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 TCHHQ07283 1943 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 PAGE1O75459 146 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 PCDH8O95206 1070 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 CCL23P55773 120 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 CYP4F8P98187 520 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 KCNA10Q16322 511 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 TRIM40Q6P9F5 258 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 NLGN2Q8NFZ4 835 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 TEX47Q8TBZ9 253 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 C12orf43Q96C57 262 aaKnown RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 FAXDC2Q96IV6 333 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 FZD8Q9H461 694 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 TOR3AQ9H497 397 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 MLXQ9UH92 298 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 KPNA3O00505 521 aaPredicted RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 EI24O14681 340 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 PRMT5O14744 637 aaPredicted RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 SGTAO43765 313 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 GABBR2O75899 941 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 CKMT2P17540 419 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 CDH15P55291 814 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 MAXP61244 160 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 MPP1Q00013 466 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 FAM20CQ8IXL6 584 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 PEX5LQ8IYB4 626 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 TWIST2Q8WVJ9 160 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 USP7Q93009 1102 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 ASB9Q96DX5 294 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 MAGEB10Q96LZ2 347 aaPredicted RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 QRFPRQ96P65 431 aa11.42□□□□□ -0.58
VPS39-201ENST00000318006 THG1LQ9NWX6 298 aaKnown RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 CNOT6Q9ULM6 557 aaKnown RBP11.42□□□□□ -0.58
VPS39-201ENST00000318006 ARFGEF2Q9Y6D5 1785 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 A8MX80 341 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SMPD1P17405 629 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 CYP3A5P20815 502 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 GUCA1AP43080 201 aaPredicted RBP11.41□□□□□ -0.58
VPS39-201ENST00000318006 PTPN9P43378 593 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 WNT3AP56704 352 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 INTS10Q9NVR2 710 aaKnown RBP11.41□□□□□ -0.58
VPS39-201ENST00000318006 TMEM59LQ9UK28 342 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 PRAMEF33A0A0G2JMD5 474 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 NFKBIEO00221 500 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SLC30A4O14863 429 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 PRAMEF10O60809 474 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 DUSP11O75319 330 aaKnown RBP11.41□□□□□ -0.58
VPS39-201ENST00000318006 ALDH1A2O94788 518 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 ENTPD1P49961 510 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 CDK18Q07002 472 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 DEFB115Q30KQ5 88 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SLC10A6Q3KNW5 377 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 TEX44Q53QW1 395 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SFT2D3Q587I9 215 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 CERCAMQ5T4B2 595 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 UNC5BQ8IZJ1 945 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SPPL2BQ8TCT7 592 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 HDAC10Q969S8 669 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SLC9A7Q96T83 725 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 PADI3Q9ULW8 664 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 BMP10O95393 424 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 FABP3P05413 133 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 UNGP13051 313 aaPredicted RBP11.41□□□□□ -0.58
VPS39-201ENST00000318006 SLC6A2P23975 617 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 THOP1P52888 689 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 E2F2Q14209 437 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 ACOX1Q15067 660 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 TSC22D1Q15714 1073 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 COLEC12Q5KU26 742 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SPRYD7Q5W111 196 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SLCO2A1Q92959 643 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SLC22A4Q9H015 551 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SDCBP2Q9H190 292 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 ASB8Q9H765 288 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 TLL2Q9Y6L7 1015 aa11.41□□□□□ -0.58
VPS39-201ENST00000318006 SCAMP3O14828 347 aaKnown RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms