RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 KLHL4Q9C0H6 718 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 SLC40A1Q9NP59 571 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 GEMIN8Q9NWZ8 242 aaKnown RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 AHDC1Q5TGY3 1603 aaPredicted RBP13.38□□□□□ -0.27
RFFL-201ENST00000315249 CAPN1P07384 714 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 PSMB9P28065 219 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 PTPN4P29074 926 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 CLCNKAP51800 687 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 ART4Q93070 314 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 HBEGFQ99075 208 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 PIGVQ9NUD9 493 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 RPS6KA6Q9UK32 745 aa13.38□□□□□ -0.27
RFFL-201ENST00000315249 SOCS7O14512 581 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 C2P06681 752 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 CHRNA4P43681 627 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 TSNQ15631 228 aaKnown RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 UPP1Q16831 310 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 TMPRSS6Q8IU80 811 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 FUKQ8N0W3 1084 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 MOSPD2Q8NHP6 518 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 TRAF6Q9Y4K3 522 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 NUP188Q5SRE5 1749 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 NWD2Q9ULI1 1742 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 HEPACAM2A8MVW5 462 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 SAP18O00422 153 aaKnown RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 KIF1CO43896 1103 aaKnown RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 CHRNB2P17787 502 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 TPSB2P20231 275 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 AQP1P29972 269 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 SCTRP47872 440 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 TPSAB1Q15661 275 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 CA9Q16790 459 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 CHRDL2Q6WN34 429 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 ANKRD7Q92527 254 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 APOL4Q9BPW4 351 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 REXO4Q9GZR2 422 aaKnown RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 FAM25AB3EWG3 89 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 FAM25CB3EWG5 89 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 FAM25GB3EWG6 89 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 ZNF865P0CJ78 1059 aaPredicted RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 ARCN1P48444 511 aaKnown RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 SMYD1Q8NB12 490 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 RNASE11Q8TAA1 199 aaKnown RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 GPR62Q9BZJ7 368 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 SLITRK2Q9H156 845 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 TCRBV7S2A1N4TA0A589 114 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 TYRP1P17643 537 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 PIK3R1P27986 724 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 TMEM209Q96SK2 561 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 J3KR12 359 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 HOXC12P31275 282 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 CCNHP51946 323 aaPredicted RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 HK2P52789 917 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 JAM2P57087 298 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 GTF2H2Q13888 395 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 LPAL2Q16609 132 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 TSTD2Q5T7W7 516 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 MFSD5Q6N075 450 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 GTF2H2CQ6P1K8 395 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 IPPKQ9H8X2 491 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 LRTM1Q9HBL6 345 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 MYH4Q9Y623 1939 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 A0A0G2JN53 185 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 PRG2P13727 222 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 CDH5P33151 784 aaPredicted RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 GPD2P43304 727 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 SPIBQ01892 262 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 ZNF605Q86T29 641 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 VANGL1Q8TAA9 524 aaPredicted RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 EBPLQ9BY08 206 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 KCNN2Q9H2S1 579 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 PCDHGB3Q9Y5G1 929 aa13.37□□□□□ -0.27
RFFL-201ENST00000315249 COPG1Q9Y678 874 aaKnown RBP13.37□□□□□ -0.27
RFFL-201ENST00000315249 MYL12BO14950 172 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 PRKCHP24723 683 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 CHIT1Q13231 466 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 ZNF460Q14592 562 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 DUPD1Q68J44 220 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 KRT77Q7Z794 578 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 GKN2Q86XP6 184 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 ADHFE1Q8IWW8 467 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 OR6Y1Q8NGX8 325 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 TEKT5Q96M29 485 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 PACSIN3Q9UKS6 424 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 RAP2CQ9Y3L5 183 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 HS3ST4Q9Y661 456 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 ILVBLA1L0T0 632 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 B3GALT2O43825 422 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 OR10H3O60404 316 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 GRIA3P42263 894 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 MAGEA10P43363 369 aaPredicted RBP13.36□□□□□ -0.27
RFFL-201ENST00000315249 HSPB3Q12988 150 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 LAPTM5Q13571 262 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 RAPSNQ13702 412 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 CDC73Q6P1J9 531 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 CMTR2Q8IYT2 770 aaKnown RBP13.36□□□□□ -0.27
RFFL-201ENST00000315249 PHC3Q8NDX5 983 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 GSDMCQ9BYG8 508 aa13.36□□□□□ -0.27
RFFL-201ENST00000315249 TMEM98Q9Y2Y6 226 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms