RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CCDC89Q8N998 374 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 TSHZ2Q9NRE2 1034 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 FANCIQ9NVI1 1328 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 NR1I2O75469 434 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 MICALCLQ6ZW33 695 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 FAM184AQ8NB25 1140 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 DDX12PQ92771 950 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 IPO4Q8TEX9 1081 aaKnown RBP3.26□□□□□ -1.89
SCN1A-219ENST00000641575 PCMTD1Q96MG8 357 aaPredicted RBP3.26□□□□□ -1.89
SCN1A-219ENST00000641575 CPSF2Q9P2I0 782 aaKnown RBP3.26□□□□□ -1.89
SCN1A-219ENST00000641575 PTGDRQ13258 359 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 DOCK8Q8NF50 2099 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 H3BQV1 296 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 XRCC6P12956 609 aaKnown RBP eCLIP3.26□□□□□ -1.89
SCN1A-219ENST00000641575 IFFO2Q5TF58 517 aa3.26□□□□□ -1.89
SCN1A-219ENST00000641575 GPRASP1Q5JY77 1395 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 FOXD4L5Q5VV16 416 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 SASS6Q6UVJ0 657 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 FOXD4L4Q8WXT5 416 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 CDK5RAP3Q96JB5 506 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 SCLT1Q96NL6 688 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 DOCK7Q96N67 2140 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 LRPPRCP42704 1394 aaKnown RBP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 CFAP70Q5T0N1 1121 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 FAM200AQ8TCP9 573 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 SREK1Q8WXA9 508 aaKnown RBP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 CETN3O15182 167 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 CCDC152Q4G0S7 254 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 KIAA1328Q86T90 577 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 COMMD10Q9Y6G5 202 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 MYH2Q9UKX2 1941 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 FAM177BA6PVY3 158 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 PRMT3O60678 531 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 CASTP20810 708 aaKnown RBP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 AAMPQ13685 434 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 BIN2Q9UBW5 565 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 FHAD1B1AJZ9 1412 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 PHLDB1Q86UU1 1377 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 MAP3K7O43318 606 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 TRIML1Q8N9V2 468 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 SLC17A8Q8NDX2 589 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 TNNQ9UQP3 1299 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 GAS2L2Q8NHY3 880 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 FOXD4L1Q9NU39 408 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 KIF3CO14782 793 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 BMP2KQ9NSY1 1161 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 TBC1D2BQ9UPU7 963 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 DYSFO75923 2080 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 EPB41L2O43491 1005 aaKnown RBP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 RBM5P52756 815 aaKnown RBP eCLIP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 TSPY1Q01534 308 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 BBXQ8WY36 941 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 DPYDQ12882 1025 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 RBM26Q5T8P6 1007 aaKnown RBP3.25□□□□□ -1.89
SCN1A-219ENST00000641575 TTLL5Q6EMB2 1281 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 RUFY4Q6ZNE9 571 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 LUZP1Q86V48 1076 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 FAM114A1Q8IWE2 563 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 RAB3IL1Q8TBN0 382 aa3.25□□□□□ -1.89
SCN1A-219ENST00000641575 MYH1P12882 1939 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 MED13LQ71F56 2210 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 IQCEQ6IPM2 695 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 TNCP24821 2201 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 U2SURPO15042 1029 aaKnown RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 POLR3GO15318 223 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 ZSCAN25Q6NSZ9 544 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 DAAM2Q86T65 1068 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 ZSCAN29Q8IWY8 852 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 KIAA1524Q8TCG1 905 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 PDS5BQ9NTI5 1447 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 DOCK9Q9BZ29 2069 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 SNX16P57768 344 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 EIF2B5Q13144 721 aaKnown RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 E2F5Q15329 346 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 HDAC9Q9UKV0 1011 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 CLEC11AQ9Y240 323 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 EIF3CLB5ME19 914 aaKnown RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 HNRNPMP52272 730 aaKnown RBP eCLIP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 PMFBP1Q8TBY8 1022 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 SERTAD1Q9UHV2 236 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 TPCN1Q9ULQ1 816 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 TSPY2A6NKD2 308 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 TSPY3P0CV98 308 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 TSPY8P0CW00 308 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 RBM10P98175 930 aaKnown RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 NUCB1Q02818 461 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 NUDT18Q6ZVK8 323 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 TBC1D12O60347 775 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 TCIRG1Q13488 830 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 SECISBP2LQ93073 1101 aaKnown RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 NAT10Q9H0A0 1025 aaKnown RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 BRPF3Q9ULD4 1205 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 DAPK3O43293 454 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 SP100P23497 879 aaPredicted RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 USP5P45974 858 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 LDHCP07864 332 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 ARID5AQ03989 594 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 UTP14CQ5TAP6 766 aaKnown RBP3.24□□□□□ -1.89
SCN1A-219ENST00000641575 EFCAB2Q5VUJ9 269 aa3.24□□□□□ -1.89
SCN1A-219ENST00000641575 GGT6Q6P531 493 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms