RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 RGPD1P0DJD0 1748 aa22.77■■□□□ 1.24
CLN3-256ENST00000637107 SEPT12Q8IYM1 358 aa22.77■■□□□ 1.24
CLN3-256ENST00000637107 ADAMTS8Q9UP79 889 aa22.77■■□□□ 1.24
CLN3-256ENST00000637107 THSD7AQ9UPZ6 1657 aa22.76■■□□□ 1.23
CLN3-256ENST00000637107 EP400Q96L91 3159 aa22.76■■□□□ 1.23
CLN3-256ENST00000637107 DISP2A7MBM2 1401 aa22.76■■□□□ 1.23
CLN3-256ENST00000637107 NCAPD2Q15021 1401 aa22.76■■□□□ 1.23
CLN3-256ENST00000637107 U2SURPO15042 1029 aaKnown RBP22.75■■□□□ 1.23
CLN3-256ENST00000637107 IL2RBP14784 551 aa22.75■■□□□ 1.23
CLN3-256ENST00000637107 AEBP1Q8IUX7 1158 aa22.75■■□□□ 1.23
CLN3-256ENST00000637107 WDR43Q15061 677 aaKnown RBP eCLIP22.74■■□□□ 1.23
CLN3-256ENST00000637107 SULT6B1Q6IMI4 303 aa22.74■■□□□ 1.23
CLN3-256ENST00000637107 MEGF6O75095 1541 aa22.74■■□□□ 1.23
CLN3-256ENST00000637107 HMOX1P09601 288 aa22.73■■□□□ 1.23
CLN3-256ENST00000637107 BRWD3Q6RI45 1802 aa22.73■■□□□ 1.23
CLN3-256ENST00000637107 ILDR2Q71H61 639 aa22.72■■□□□ 1.23
CLN3-256ENST00000637107 PARP4Q9UKK3 1724 aaKnown RBP22.72■■□□□ 1.23
CLN3-256ENST00000637107 RAPGEF4Q8WZA2 1011 aa22.71■■□□□ 1.23
CLN3-256ENST00000637107 CDCA7Q9BWT1 371 aaPredicted RBP22.7■■□□□ 1.23
CLN3-256ENST00000637107 LRRC37A3O60309 1634 aa22.7■■□□□ 1.23
CLN3-256ENST00000637107 KDRP35968 1356 aa22.69■■□□□ 1.22
CLN3-256ENST00000637107 DDB1Q16531 1140 aa22.69■■□□□ 1.22
CLN3-256ENST00000637107 U2AF1L5P0DN76 240 aaPredicted RBP22.69■■□□□ 1.22
CLN3-256ENST00000637107 U2AF1Q01081 240 aaKnown RBP eCLIP22.69■■□□□ 1.22
CLN3-256ENST00000637107 OVOS2A0A0G2JMS6 1433 aa22.68■■□□□ 1.22
CLN3-256ENST00000637107 TATP17735 454 aaPredicted RBP22.68■■□□□ 1.22
CLN3-256ENST00000637107 CDCA7LQ96GN5 454 aa22.68■■□□□ 1.22
CLN3-256ENST00000637107 EXOC5O00471 708 aa22.67■■□□□ 1.22
CLN3-256ENST00000637107 FAM182BQ5T319 152 aa22.67■■□□□ 1.22
CLN3-256ENST00000637107 KRT27Q7Z3Y8 459 aa22.65■■□□□ 1.22
CLN3-256ENST00000637107 RCAN3Q9UKA8 241 aa22.65■■□□□ 1.22
CLN3-256ENST00000637107 TNS2Q63HR2 1409 aa22.65■■□□□ 1.22
CLN3-256ENST00000637107 B4GALNT3Q6L9W6 998 aa22.65■■□□□ 1.22
CLN3-256ENST00000637107 ZCRB1Q8TBF4 217 aaKnown RBP22.64■■□□□ 1.21
CLN3-256ENST00000637107 RSPH6AQ9H0K4 717 aa22.64■■□□□ 1.21
CLN3-256ENST00000637107 SHANK3Q9BYB0 1731 aa22.63■■□□□ 1.21
CLN3-256ENST00000637107 MARCH10Q8NA82 808 aaPredicted RBP22.63■■□□□ 1.21
CLN3-256ENST00000637107 RRP1P56182 461 aaKnown RBP22.62■■□□□ 1.21
CLN3-256ENST00000637107 DDX54Q8TDD1 881 aaKnown RBP22.62■■□□□ 1.21
CLN3-256ENST00000637107 PKD1L3Q7Z443 1732 aa22.61■■□□□ 1.21
CLN3-256ENST00000637107 PRKAR2BP31323 418 aa22.61■■□□□ 1.21
CLN3-256ENST00000637107 FCHSD2O94868 740 aa22.6■■□□□ 1.21
CLN3-256ENST00000637107 SPG7Q9UQ90 795 aa22.59■■□□□ 1.21
CLN3-256ENST00000637107 ZNF521Q96K83 1311 aa22.58■■□□□ 1.21
CLN3-256ENST00000637107 CYP27B1O15528 508 aa22.58■■□□□ 1.21
CLN3-256ENST00000637107 PHACTR3Q96KR7 559 aa22.58■■□□□ 1.21
CLN3-256ENST00000637107 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLN3-256ENST00000637107 PLEKHO1Q53GL0 409 aaPredicted RBP22.57■■□□□ 1.2
CLN3-256ENST00000637107 PCDH11XQ9BZA7 1347 aa22.57■■□□□ 1.2
CLN3-256ENST00000637107 PCDH11YQ9BZA8 1340 aa22.57■■□□□ 1.2
CLN3-256ENST00000637107 CCDC146Q8IYE0 955 aa22.57■■□□□ 1.2
CLN3-256ENST00000637107 MTHFSDQ2M296 383 aaKnown RBP22.56■■□□□ 1.2
CLN3-256ENST00000637107 AMOTQ4VCS5 1084 aa22.56■■□□□ 1.2
CLN3-256ENST00000637107 PLEKHF1Q96S99 279 aa22.56■■□□□ 1.2
CLN3-256ENST00000637107 PLEKHG2Q9H7P9 1386 aa22.55■■□□□ 1.2
CLN3-256ENST00000637107 ZNF530Q6P9A1 599 aaPredicted RBP22.54■■□□□ 1.2
CLN3-256ENST00000637107 PHKG2P15735 406 aa22.53■■□□□ 1.2
CLN3-256ENST00000637107 KAT6BQ8WYB5 2073 aa22.52■■□□□ 1.2
CLN3-256ENST00000637107 GOLGA2Q08379 1002 aa22.52■■□□□ 1.2
CLN3-256ENST00000637107 FAM196AQ6ZSG2 479 aa22.52■■□□□ 1.2
CLN3-256ENST00000637107 IFNL2Q8IZJ0 200 aa22.52■■□□□ 1.2
CLN3-256ENST00000637107 APAF1O14727 1248 aa22.51■■□□□ 1.19
CLN3-256ENST00000637107 DUSP27Q5VZP5 1158 aa22.5■■□□□ 1.19
CLN3-256ENST00000637107 CCDC136Q96JN2 1154 aa22.5■■□□□ 1.19
CLN3-256ENST00000637107 ACSBG1Q96GR2 724 aa22.49■■□□□ 1.19
CLN3-256ENST00000637107 PNNQ9H307 717 aaKnown RBP22.49■■□□□ 1.19
CLN3-256ENST00000637107 RBM19Q9Y4C8 960 aaKnown RBP22.49■■□□□ 1.19
CLN3-256ENST00000637107 SBF2Q86WG5 1849 aa22.49■■□□□ 1.19
CLN3-256ENST00000637107 C1orf141Q5JVX7 400 aa22.49■■□□□ 1.19
CLN3-256ENST00000637107 NGEFQ8N5V2 710 aa22.49■■□□□ 1.19
CLN3-256ENST00000637107 SLFN5Q08AF3 891 aa22.48■■□□□ 1.19
CLN3-256ENST00000637107 NKX1-1Q15270 411 aaPredicted RBP22.48■■□□□ 1.19
CLN3-256ENST00000637107 BCL9O00512 1426 aa22.48■■□□□ 1.19
CLN3-256ENST00000637107 NEFMP07197 916 aa22.47■■□□□ 1.19
CLN3-256ENST00000637107 AKAP4Q5JQC9 854 aa22.47■■□□□ 1.19
CLN3-256ENST00000637107 PTF1AQ7RTS3 328 aa22.47■■□□□ 1.19
CLN3-256ENST00000637107 GAS2L2Q8NHY3 880 aa22.47■■□□□ 1.19
CLN3-256ENST00000637107 MAPK8IP3Q9UPT6 1336 aa22.47■■□□□ 1.19
CLN3-256ENST00000637107 KCNQ2O43526 872 aa22.47■■□□□ 1.19
CLN3-256ENST00000637107 TRIM37O94972 964 aa22.47■■□□□ 1.19
CLN3-256ENST00000637107 EXOC6Q8TAG9 804 aa22.47■■□□□ 1.19
CLN3-256ENST00000637107 DOT1LQ8TEK3 1739 aa22.46■■□□□ 1.19
CLN3-256ENST00000637107 MPRIPQ6WCQ1 1025 aa22.46■■□□□ 1.19
CLN3-256ENST00000637107 RUNDC1Q96C34 613 aa22.46■■□□□ 1.19
CLN3-256ENST00000637107 TRMT2AQ8IZ69 625 aaKnown RBP22.45■■□□□ 1.18
CLN3-256ENST00000637107 TOGARAM1Q9Y4F4 1720 aa22.45■■□□□ 1.18
CLN3-256ENST00000637107 KDM6AO15550 1401 aaPredicted RBP22.45■■□□□ 1.18
CLN3-256ENST00000637107 DLG5Q8TDM6 1919 aa22.43■■□□□ 1.18
CLN3-256ENST00000637107 PRIM1P49642 420 aaKnown RBP22.43■■□□□ 1.18
CLN3-256ENST00000637107 SYTL4Q96C24 671 aaPredicted RBP22.43■■□□□ 1.18
CLN3-256ENST00000637107 DCAF5Q96JK2 942 aa22.43■■□□□ 1.18
CLN3-256ENST00000637107 LGR6Q9HBX8 967 aa22.43■■□□□ 1.18
CLN3-256ENST00000637107 MAP3K5Q99683 1374 aa22.43■■□□□ 1.18
CLN3-256ENST00000637107 GNAT3A8MTJ3 354 aa22.43■■□□□ 1.18
CLN3-256ENST00000637107 HSP90AB1P08238 724 aaKnown RBP22.43■■□□□ 1.18
CLN3-256ENST00000637107 VIRMAQ69YN4 1812 aaKnown RBP22.42■■□□□ 1.18
CLN3-256ENST00000637107 NFE2L2Q16236 605 aa22.42■■□□□ 1.18
CLN3-256ENST00000637107 RRP7AQ9Y3A4 280 aaKnown RBP22.42■■□□□ 1.18
CLN3-256ENST00000637107 PLIN1O60240 522 aa22.41■■□□□ 1.18
CLN3-256ENST00000637107 UPF1Q92900 1129 aaKnown RBP eCLIP22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms