RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 YBX3P16989 372 aaKnown RBP eCLIP10.41□□□□□ -0.74
CIITA-214ENST00000636238 L3MBTL2Q969R5 705 aa10.41□□□□□ -0.74
CIITA-214ENST00000636238 CCNL1Q9UK58 526 aaPredicted RBP10.41□□□□□ -0.74
CIITA-214ENST00000636238 NSD3Q9BZ95 1437 aa10.41□□□□□ -0.74
CIITA-214ENST00000636238 RTL1A6NKG5 1358 aa10.4□□□□□ -0.74
CIITA-214ENST00000636238 NSD2O96028 1365 aa10.4□□□□□ -0.74
CIITA-214ENST00000636238 USP47Q96K76 1375 aa10.4□□□□□ -0.74
CIITA-214ENST00000636238 BTAF1O14981 1849 aa10.4□□□□□ -0.74
CIITA-214ENST00000636238 PRIM1P49642 420 aaKnown RBP10.4□□□□□ -0.74
CIITA-214ENST00000636238 NME9Q86XW9 330 aa10.4□□□□□ -0.74
CIITA-214ENST00000636238 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.4□□□□□ -0.74
CIITA-214ENST00000636238 ZCRB1Q8TBF4 217 aaKnown RBP10.4□□□□□ -0.74
CIITA-214ENST00000636238 DDX54Q8TDD1 881 aaKnown RBP10.4□□□□□ -0.74
CIITA-214ENST00000636238 CD163L1Q9NR16 1453 aa10.4□□□□□ -0.74
CIITA-214ENST00000636238 GOLGB1Q14789 3259 aaKnown RBP10.39□□□□□ -0.75
CIITA-214ENST00000636238 COL23A1Q86Y22 540 aaPredicted RBP10.39□□□□□ -0.75
CIITA-214ENST00000636238 MON2Q7Z3U7 1717 aa10.38□□□□□ -0.75
CIITA-214ENST00000636238 FAM208AQ9UK61 1670 aaKnown RBP10.38□□□□□ -0.75
CIITA-214ENST00000636238 SYTL4Q96C24 671 aaPredicted RBP10.38□□□□□ -0.75
CIITA-214ENST00000636238 SMARCC1Q92922 1105 aaPredicted RBP10.37□□□□□ -0.75
CIITA-214ENST00000636238 KIF24Q5T7B8 1368 aa10.37□□□□□ -0.75
CIITA-214ENST00000636238 TONSLQ96HA7 1378 aa10.37□□□□□ -0.75
CIITA-214ENST00000636238 MSH5O43196 834 aa10.36□□□□□ -0.75
CIITA-214ENST00000636238 APLP1P51693 650 aa10.36□□□□□ -0.75
CIITA-214ENST00000636238 COG3Q96JB2 828 aa10.36□□□□□ -0.75
CIITA-214ENST00000636238 A0A1W2PP64 1363 aa10.36□□□□□ -0.75
CIITA-214ENST00000636238 SMG6Q86US8 1419 aaKnown RBP10.35□□□□□ -0.75
CIITA-214ENST00000636238 HOXC9P31274 260 aa10.35□□□□□ -0.75
CIITA-214ENST00000636238 TMC1Q8TDI8 760 aa10.35□□□□□ -0.75
CIITA-214ENST00000636238 MAP3K19Q56UN5 1328 aa10.34□□□□□ -0.75
CIITA-214ENST00000636238 PCDH11XQ9BZA7 1347 aa10.34□□□□□ -0.75
CIITA-214ENST00000636238 PCDH11YQ9BZA8 1340 aa10.34□□□□□ -0.75
CIITA-214ENST00000636238 RGPD5Q99666 1765 aa10.34□□□□□ -0.75
CIITA-214ENST00000636238 LY75O60449 1722 aa10.34□□□□□ -0.75
CIITA-214ENST00000636238 SSFA2P28290 1259 aa10.34□□□□□ -0.75
CIITA-214ENST00000636238 AMPHP49418 695 aa10.34□□□□□ -0.75
CIITA-214ENST00000636238 RAPGEF4Q8WZA2 1011 aa10.34□□□□□ -0.75
CIITA-214ENST00000636238 MEGF6O75095 1541 aa10.33□□□□□ -0.76
CIITA-214ENST00000636238 CARD11Q9BXL7 1154 aa10.33□□□□□ -0.76
CIITA-214ENST00000636238 SLC12A5Q9H2X9 1139 aa10.33□□□□□ -0.76
CIITA-214ENST00000636238 TIMELESSQ9UNS1 1208 aa10.33□□□□□ -0.76
CIITA-214ENST00000636238 PALLDQ8WX93 1383 aa10.33□□□□□ -0.76
CIITA-214ENST00000636238 PLEKHG2Q9H7P9 1386 aa10.33□□□□□ -0.76
CIITA-214ENST00000636238 KIF3CO14782 793 aa10.32□□□□□ -0.76
CIITA-214ENST00000636238 TOMM70O94826 608 aa10.32□□□□□ -0.76
CIITA-214ENST00000636238 TATP17735 454 aaPredicted RBP10.32□□□□□ -0.76
CIITA-214ENST00000636238 KCNQ4P56696 695 aa10.32□□□□□ -0.76
CIITA-214ENST00000636238 AK7Q96M32 723 aa10.32□□□□□ -0.76
CIITA-214ENST00000636238 CICQ96RK0 1608 aaPredicted RBP10.32□□□□□ -0.76
CIITA-214ENST00000636238 IGSF1Q8N6C5 1336 aa10.32□□□□□ -0.76
CIITA-214ENST00000636238 MSL1Q68DK7 614 aa10.31□□□□□ -0.76
CIITA-214ENST00000636238 LTV1Q96GA3 475 aaPredicted RBP10.31□□□□□ -0.76
CIITA-214ENST00000636238 LTN1O94822 1766 aa10.31□□□□□ -0.76
CIITA-214ENST00000636238 INSRP06213 1382 aa10.3□□□□□ -0.76
CIITA-214ENST00000636238 TGFB2P61812 414 aa10.3□□□□□ -0.76
CIITA-214ENST00000636238 NKX1-1Q15270 411 aaPredicted RBP10.3□□□□□ -0.76
CIITA-214ENST00000636238 NBPF6Q5VWK0 638 aa10.3□□□□□ -0.76
CIITA-214ENST00000636238 NBPF4Q96M43 638 aa10.3□□□□□ -0.76
CIITA-214ENST00000636238 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.29□□□□□ -0.76
CIITA-214ENST00000636238 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.29□□□□□ -0.76
CIITA-214ENST00000636238 DOT1LQ8TEK3 1739 aa10.29□□□□□ -0.76
CIITA-214ENST00000636238 FLT4P35916 1363 aa10.28□□□□□ -0.76
CIITA-214ENST00000636238 FSTL1Q12841 308 aa10.28□□□□□ -0.76
CIITA-214ENST00000636238 DNAJC5GQ8N7S2 189 aa10.28□□□□□ -0.76
CIITA-214ENST00000636238 RBM46Q8TBY0 533 aaKnown RBP10.28□□□□□ -0.76
CIITA-214ENST00000636238 TUBGCP6Q96RT7 1819 aa10.28□□□□□ -0.76
CIITA-214ENST00000636238 ZNF316A6NFI3 1004 aaPredicted RBP10.27□□□□□ -0.77
CIITA-214ENST00000636238 ADRA2BP18089 450 aa10.27□□□□□ -0.77
CIITA-214ENST00000636238 MPRIPQ6WCQ1 1025 aa10.27□□□□□ -0.77
CIITA-214ENST00000636238 NLGN1Q8N2Q7 840 aa10.27□□□□□ -0.77
CIITA-214ENST00000636238 ZNF526Q8TF50 670 aaPredicted RBP10.27□□□□□ -0.77
CIITA-214ENST00000636238 NCAPD2Q15021 1401 aa10.26□□□□□ -0.77
CIITA-214ENST00000636238 C10orf71Q711Q0 1435 aa10.26□□□□□ -0.77
CIITA-214ENST00000636238 C5P01031 1676 aa10.26□□□□□ -0.77
CIITA-214ENST00000636238 LOC102724428A0A0B4J2F2 783 aa10.26□□□□□ -0.77
CIITA-214ENST00000636238 CYP27B1O15528 508 aa10.26□□□□□ -0.77
CIITA-214ENST00000636238 SIK1P57059 783 aa10.26□□□□□ -0.77
CIITA-214ENST00000636238 JMYQ8N9B5 988 aa10.26□□□□□ -0.77
CIITA-214ENST00000636238 TESK2Q96S53 571 aa10.26□□□□□ -0.77
CIITA-214ENST00000636238 SPG7Q9UQ90 795 aa10.26□□□□□ -0.77
CIITA-214ENST00000636238 FYB1O15117 783 aa10.25□□□□□ -0.77
CIITA-214ENST00000636238 PIGBQ92521 554 aa10.25□□□□□ -0.77
CIITA-214ENST00000636238 C4BP0C0L5 1744 aa10.24□□□□□ -0.77
CIITA-214ENST00000636238 PXDNLA1KZ92 1463 aa10.24□□□□□ -0.77
CIITA-214ENST00000636238 CDCA8Q53HL2 280 aa10.24□□□□□ -0.77
CIITA-214ENST00000636238 RC3H1Q5TC82 1133 aaKnown RBP10.24□□□□□ -0.77
CIITA-214ENST00000636238 KLRG1Q96E93 195 aa10.24□□□□□ -0.77
CIITA-214ENST00000636238 CCDC87Q9NVE4 849 aa10.24□□□□□ -0.77
CIITA-214ENST00000636238 ZC3H4Q9UPT8 1303 aaKnown RBP10.24□□□□□ -0.77
CIITA-214ENST00000636238 KAT6BQ8WYB5 2073 aa10.23□□□□□ -0.77
CIITA-214ENST00000636238 MMP10P09238 476 aa10.23□□□□□ -0.77
CIITA-214ENST00000636238 RRS1Q15050 365 aaKnown RBP10.23□□□□□ -0.77
CIITA-214ENST00000636238 TMOD3Q9NYL9 352 aa10.23□□□□□ -0.77
CIITA-214ENST00000636238 KDM2BQ8NHM5 1336 aa10.23□□□□□ -0.77
CIITA-214ENST00000636238 GNPATO15228 680 aa10.22□□□□□ -0.77
CIITA-214ENST00000636238 PHF14O94880 888 aa10.22□□□□□ -0.77
CIITA-214ENST00000636238 TMF1P82094 1093 aa10.22□□□□□ -0.77
CIITA-214ENST00000636238 HSP90AB2PQ58FF8 381 aa10.22□□□□□ -0.77
CIITA-214ENST00000636238 AMIGO3Q86WK7 504 aa10.22□□□□□ -0.77
CIITA-214ENST00000636238 C16orf71Q8IYS4 520 aaPredicted RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms