RNA–Protein interactions for RNA: ENST00000628810.1

SOX2-OT-249, SOX2 overlapping transcript, humanhuman

TSL 5 BASIC

Gene SOX2-OT, Length 618 nt, Biotype sense overlapping.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-OT-249ENST00000628810 PLEKHG2Q9H7P9 1386 aa13.22□□□□□ -0.29
SOX2-OT-249ENST00000628810 CCER2I3L3R5 266 aa13.22□□□□□ -0.29
SOX2-OT-249ENST00000628810 DIAPH1O60610 1272 aaKnown RBP13.22□□□□□ -0.29
SOX2-OT-249ENST00000628810 VPS72Q15906 364 aa13.22□□□□□ -0.29
SOX2-OT-249ENST00000628810 USP21Q9UK80 565 aa13.22□□□□□ -0.29
SOX2-OT-249ENST00000628810 CARD10Q9BWT7 1032 aa13.21□□□□□ -0.29
SOX2-OT-249ENST00000628810 DISP2A7MBM2 1401 aa13.21□□□□□ -0.3
SOX2-OT-249ENST00000628810 SPATA31A5Q5VU36 1347 aa13.2□□□□□ -0.3
SOX2-OT-249ENST00000628810 SPATA31A7Q8IWB4 1347 aa13.2□□□□□ -0.3
SOX2-OT-249ENST00000628810 CCDC184Q52MB2 194 aa13.2□□□□□ -0.3
SOX2-OT-249ENST00000628810 ZNF772Q68DY9 489 aaPredicted RBP13.2□□□□□ -0.3
SOX2-OT-249ENST00000628810 LARP1Q6PKG0 1096 aaKnown RBP13.2□□□□□ -0.3
SOX2-OT-249ENST00000628810 MIER1Q8N108 512 aa13.2□□□□□ -0.3
SOX2-OT-249ENST00000628810 THSD7AQ9UPZ6 1657 aa13.2□□□□□ -0.3
SOX2-OT-249ENST00000628810 PARP4Q9UKK3 1724 aaKnown RBP13.19□□□□□ -0.3
SOX2-OT-249ENST00000628810 SPATA31A1Q5TZJ5 1347 aa13.19□□□□□ -0.3
SOX2-OT-249ENST00000628810 CD44P16070 742 aaKnown RBP13.19□□□□□ -0.3
SOX2-OT-249ENST00000628810 EVA1CP58658 441 aa13.19□□□□□ -0.3
SOX2-OT-249ENST00000628810 NBPF6Q5VWK0 638 aa13.19□□□□□ -0.3
SOX2-OT-249ENST00000628810 NBPF4Q96M43 638 aa13.19□□□□□ -0.3
SOX2-OT-249ENST00000628810 EYA1Q99502 592 aa13.19□□□□□ -0.3
SOX2-OT-249ENST00000628810 STRN4Q9NRL3 753 aa13.19□□□□□ -0.3
SOX2-OT-249ENST00000628810 TRPC5Q9UL62 973 aaPredicted RBP13.19□□□□□ -0.3
SOX2-OT-249ENST00000628810 CSB-PGBD3P0DP91 1061 aa13.18□□□□□ -0.3
SOX2-OT-249ENST00000628810 TOM1L2Q6ZVM7 507 aa13.18□□□□□ -0.3
SOX2-OT-249ENST00000628810 LTV1Q96GA3 475 aaPredicted RBP13.18□□□□□ -0.3
SOX2-OT-249ENST00000628810 MRS2Q9HD23 443 aa13.18□□□□□ -0.3
SOX2-OT-249ENST00000628810 NUDCQ9Y266 331 aa13.18□□□□□ -0.3
SOX2-OT-249ENST00000628810 THRAP3Q9Y2W1 955 aaKnown RBP13.18□□□□□ -0.3
SOX2-OT-249ENST00000628810 PKD1L3Q7Z443 1732 aa13.18□□□□□ -0.3
SOX2-OT-249ENST00000628810 RGS17Q9UGC6 210 aaPredicted RBP13.17□□□□□ -0.3
SOX2-OT-249ENST00000628810 MEGF6O75095 1541 aa13.17□□□□□ -0.3
SOX2-OT-249ENST00000628810 LRRC37A3O60309 1634 aa13.17□□□□□ -0.3
SOX2-OT-249ENST00000628810 OVOS2A0A0G2JMS6 1433 aa13.16□□□□□ -0.3
SOX2-OT-249ENST00000628810 BARGINQ6ZT62 677 aa13.16□□□□□ -0.3
SOX2-OT-249ENST00000628810 PNISRQ8TF01 805 aaKnown RBP13.16□□□□□ -0.3
SOX2-OT-249ENST00000628810 NLRP2Q9NX02 1062 aa13.16□□□□□ -0.3
SOX2-OT-249ENST00000628810 TCP11L2Q8N4U5 519 aa13.15□□□□□ -0.3
SOX2-OT-249ENST00000628810 GJD4Q96KN9 370 aaPredicted RBP13.15□□□□□ -0.3
SOX2-OT-249ENST00000628810 SHANK3Q9BYB0 1731 aa13.15□□□□□ -0.3
SOX2-OT-249ENST00000628810 U2SURPO15042 1029 aaKnown RBP13.14□□□□□ -0.31
SOX2-OT-249ENST00000628810 AEBP1Q8IUX7 1158 aa13.14□□□□□ -0.31
SOX2-OT-249ENST00000628810 USHBP1Q8N6Y0 703 aa13.14□□□□□ -0.31
SOX2-OT-249ENST00000628810 RSPH6AQ9H0K4 717 aa13.14□□□□□ -0.31
SOX2-OT-249ENST00000628810 QTRT2Q9H974 415 aaKnown RBP13.14□□□□□ -0.31
SOX2-OT-249ENST00000628810 TNS2Q63HR2 1409 aa13.13□□□□□ -0.31
SOX2-OT-249ENST00000628810 ONECUT3O60422 494 aaPredicted RBP13.13□□□□□ -0.31
SOX2-OT-249ENST00000628810 FCHSD2O94868 740 aa13.13□□□□□ -0.31
SOX2-OT-249ENST00000628810 U2AF1L5P0DN76 240 aaPredicted RBP13.13□□□□□ -0.31
SOX2-OT-249ENST00000628810 CLCN6P51797 869 aa13.13□□□□□ -0.31
SOX2-OT-249ENST00000628810 U2AF1Q01081 240 aaKnown RBP eCLIP13.13□□□□□ -0.31
SOX2-OT-249ENST00000628810 WDR43Q15061 677 aaKnown RBP eCLIP13.13□□□□□ -0.31
SOX2-OT-249ENST00000628810 SULT6B1Q6IMI4 303 aa13.13□□□□□ -0.31
SOX2-OT-249ENST00000628810 CDCA7Q9BWT1 371 aaPredicted RBP13.13□□□□□ -0.31
SOX2-OT-249ENST00000628810 HMOX1P09601 288 aa13.11□□□□□ -0.31
SOX2-OT-249ENST00000628810 IL2RBP14784 551 aa13.11□□□□□ -0.31
SOX2-OT-249ENST00000628810 RBM6P78332 1123 aaKnown RBP13.11□□□□□ -0.31
SOX2-OT-249ENST00000628810 PLEKHF1Q96S99 279 aa13.11□□□□□ -0.31
SOX2-OT-249ENST00000628810 ADAMTS8Q9UP79 889 aa13.11□□□□□ -0.31
SOX2-OT-249ENST00000628810 CCDC9Q9Y3X0 531 aaKnown RBP13.11□□□□□ -0.31
SOX2-OT-249ENST00000628810 GABBR2O75899 941 aa13.1□□□□□ -0.31
SOX2-OT-249ENST00000628810 POTEAQ6S8J7 498 aa13.1□□□□□ -0.31
SOX2-OT-249ENST00000628810 RAPGEF4Q8WZA2 1011 aa13.1□□□□□ -0.31
SOX2-OT-249ENST00000628810 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.1□□□□□ -0.31
SOX2-OT-249ENST00000628810 USP35Q9P2H5 1018 aa13.1□□□□□ -0.31
SOX2-OT-249ENST00000628810 RGS12O14924 1447 aa13.1□□□□□ -0.31
SOX2-OT-249ENST00000628810 TATP17735 454 aaPredicted RBP13.09□□□□□ -0.31
SOX2-OT-249ENST00000628810 PRKAR2BP31323 418 aa13.09□□□□□ -0.31
SOX2-OT-249ENST00000628810 FAM98CQ17RN3 349 aaKnown RBP13.09□□□□□ -0.31
SOX2-OT-249ENST00000628810 PNNQ9H307 717 aaKnown RBP13.09□□□□□ -0.31
SOX2-OT-249ENST00000628810 ADAMTS7Q9UKP4 1686 aa13.08□□□□□ -0.31
SOX2-OT-249ENST00000628810 RXRBP28702 533 aa13.07□□□□□ -0.32
SOX2-OT-249ENST00000628810 AMOTQ4VCS5 1084 aa13.07□□□□□ -0.32
SOX2-OT-249ENST00000628810 RUNDC1Q96C34 613 aa13.07□□□□□ -0.32
SOX2-OT-249ENST00000628810 PCDH11XQ9BZA7 1347 aa13.06□□□□□ -0.32
SOX2-OT-249ENST00000628810 PCDH11YQ9BZA8 1340 aa13.06□□□□□ -0.32
SOX2-OT-249ENST00000628810 BRWD3Q6RI45 1802 aa13.06□□□□□ -0.32
SOX2-OT-249ENST00000628810 BCL9O00512 1426 aa13.05□□□□□ -0.32
SOX2-OT-249ENST00000628810 DDB1Q16531 1140 aa13.05□□□□□ -0.32
SOX2-OT-249ENST00000628810 PLEKHO1Q53GL0 409 aaPredicted RBP13.05□□□□□ -0.32
SOX2-OT-249ENST00000628810 ZCRB1Q8TBF4 217 aaKnown RBP13.05□□□□□ -0.32
SOX2-OT-249ENST00000628810 PHACTR3Q96KR7 559 aa13.05□□□□□ -0.32
SOX2-OT-249ENST00000628810 SPG7Q9UQ90 795 aa13.05□□□□□ -0.32
SOX2-OT-249ENST00000628810 MAPK8IP3Q9UPT6 1336 aa13.05□□□□□ -0.32
SOX2-OT-249ENST00000628810 FKBP8Q14318 412 aa13.04□□□□□ -0.32
SOX2-OT-249ENST00000628810 MTHFSDQ2M296 383 aaKnown RBP13.04□□□□□ -0.32
SOX2-OT-249ENST00000628810 SEPT12Q8IYM1 358 aa13.04□□□□□ -0.32
SOX2-OT-249ENST00000628810 FAM9BQ8IZU0 186 aa13.04□□□□□ -0.32
SOX2-OT-249ENST00000628810 GAS2L2Q8NHY3 880 aa13.04□□□□□ -0.32
SOX2-OT-249ENST00000628810 TOGARAM1Q9Y4F4 1720 aa13.03□□□□□ -0.32
SOX2-OT-249ENST00000628810 EXOC5O00471 708 aa13.03□□□□□ -0.32
SOX2-OT-249ENST00000628810 NEFMP07197 916 aa13.03□□□□□ -0.32
SOX2-OT-249ENST00000628810 DLG5Q8TDM6 1919 aa13.03□□□□□ -0.32
SOX2-OT-249ENST00000628810 MAP3K5Q99683 1374 aa13.03□□□□□ -0.32
SOX2-OT-249ENST00000628810 MRC1P22897 1456 aa13.03□□□□□ -0.32
SOX2-OT-249ENST00000628810 CYP27B1O15528 508 aa13.02□□□□□ -0.33
SOX2-OT-249ENST00000628810 PHKG2P15735 406 aa13.02□□□□□ -0.33
SOX2-OT-249ENST00000628810 NKX1-1Q15270 411 aaPredicted RBP13.02□□□□□ -0.33
SOX2-OT-249ENST00000628810 NFE2L2Q16236 605 aa13.02□□□□□ -0.33
SOX2-OT-249ENST00000628810 CCDC146Q8IYE0 955 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms