RNA–Protein interactions for RNA: ENST00000624822.1

LINC01560-202, Transcript of long intergenic non-protein coding RNA 1560, humanhuman

Gene LINC01560, Length 1,238 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01560-202ENST00000624822 BLMP54132 1417 aaPredicted RBP13.04□□□□□ -0.32
LINC01560-202ENST00000624822 HOXC9P31274 260 aa13.03□□□□□ -0.32
LINC01560-202ENST00000624822 CC2D1BQ5T0F9 858 aaKnown RBP13.03□□□□□ -0.32
LINC01560-202ENST00000624822 IP6K1Q92551 441 aa13.03□□□□□ -0.32
LINC01560-202ENST00000624822 LTV1Q96GA3 475 aaPredicted RBP13.03□□□□□ -0.32
LINC01560-202ENST00000624822 WDR17Q8IZU2 1322 aa13.03□□□□□ -0.32
LINC01560-202ENST00000624822 RTL1A6NKG5 1358 aa13.03□□□□□ -0.32
LINC01560-202ENST00000624822 THSD7AQ9UPZ6 1657 aa13.02□□□□□ -0.32
LINC01560-202ENST00000624822 ANKRD24Q8TF21 1146 aa13.02□□□□□ -0.33
LINC01560-202ENST00000624822 EMILIN1Q9Y6C2 1016 aa13.02□□□□□ -0.33
LINC01560-202ENST00000624822 ERBB3P21860 1342 aa13.02□□□□□ -0.33
LINC01560-202ENST00000624822 SMG6Q86US8 1419 aaKnown RBP13.02□□□□□ -0.33
LINC01560-202ENST00000624822 PARP4Q9UKK3 1724 aaKnown RBP13.02□□□□□ -0.33
LINC01560-202ENST00000624822 PER1O15534 1290 aaPredicted RBP13.01□□□□□ -0.33
LINC01560-202ENST00000624822 AMER1Q5JTC6 1135 aaPredicted RBP13.01□□□□□ -0.33
LINC01560-202ENST00000624822 SEPT12Q8IYM1 358 aa13.01□□□□□ -0.33
LINC01560-202ENST00000624822 TCP11L2Q8N4U5 519 aa13.01□□□□□ -0.33
LINC01560-202ENST00000624822 NLRP2Q9NX02 1062 aa13.01□□□□□ -0.33
LINC01560-202ENST00000624822 FLT4P35916 1363 aa13.01□□□□□ -0.33
LINC01560-202ENST00000624822 SOCS7O14512 581 aa13□□□□□ -0.33
LINC01560-202ENST00000624822 LRRC37A3O60309 1634 aa12.99□□□□□ -0.33
LINC01560-202ENST00000624822 KIF24Q5T7B8 1368 aa12.99□□□□□ -0.33
LINC01560-202ENST00000624822 THRAP3Q9Y2W1 955 aaKnown RBP12.99□□□□□ -0.33
LINC01560-202ENST00000624822 DDX10Q13206 875 aaKnown RBP12.98□□□□□ -0.33
LINC01560-202ENST00000624822 HSP90AB2PQ58FF8 381 aa12.98□□□□□ -0.33
LINC01560-202ENST00000624822 POLKQ9UBT6 870 aa12.98□□□□□ -0.33
LINC01560-202ENST00000624822 INSRP06213 1382 aa12.97□□□□□ -0.33
LINC01560-202ENST00000624822 BARGINQ6ZT62 677 aa12.97□□□□□ -0.33
LINC01560-202ENST00000624822 CARD10Q9BWT7 1032 aa12.97□□□□□ -0.33
LINC01560-202ENST00000624822 NPC1L1Q9UHC9 1359 aa12.96□□□□□ -0.33
LINC01560-202ENST00000624822 ONECUT3O60422 494 aaPredicted RBP12.96□□□□□ -0.33
LINC01560-202ENST00000624822 KRT27Q7Z3Y8 459 aa12.96□□□□□ -0.33
LINC01560-202ENST00000624822 ZNF316A6NFI3 1004 aaPredicted RBP12.95□□□□□ -0.34
LINC01560-202ENST00000624822 PDE3BQ13370 1112 aa12.94□□□□□ -0.34
LINC01560-202ENST00000624822 USHBP1Q8N6Y0 703 aa12.94□□□□□ -0.34
LINC01560-202ENST00000624822 IL2RBP14784 551 aa12.93□□□□□ -0.34
LINC01560-202ENST00000624822 DDB1Q16531 1140 aa12.93□□□□□ -0.34
LINC01560-202ENST00000624822 FAM182BQ5T319 152 aa12.93□□□□□ -0.34
LINC01560-202ENST00000624822 CDCA7Q9BWT1 371 aaPredicted RBP12.93□□□□□ -0.34
LINC01560-202ENST00000624822 KAT6BQ8WYB5 2073 aa12.93□□□□□ -0.34
LINC01560-202ENST00000624822 DISP2A7MBM2 1401 aa12.92□□□□□ -0.34
LINC01560-202ENST00000624822 RGPD1P0DJD0 1748 aa12.92□□□□□ -0.34
LINC01560-202ENST00000624822 NBPF6Q5VWK0 638 aa12.92□□□□□ -0.34
LINC01560-202ENST00000624822 NBPF4Q96M43 638 aa12.92□□□□□ -0.34
LINC01560-202ENST00000624822 SBF2Q86WG5 1849 aa12.92□□□□□ -0.34
LINC01560-202ENST00000624822 SHANK3Q9BYB0 1731 aa12.91□□□□□ -0.34
LINC01560-202ENST00000624822 MTHFSP49914 203 aa12.91□□□□□ -0.34
LINC01560-202ENST00000624822 EIF4A2Q14240 407 aaKnown RBP12.91□□□□□ -0.34
LINC01560-202ENST00000624822 TNS2Q63HR2 1409 aa12.9□□□□□ -0.34
LINC01560-202ENST00000624822 EXOC5O00471 708 aa12.9□□□□□ -0.34
LINC01560-202ENST00000624822 RAPGEF4Q8WZA2 1011 aa12.9□□□□□ -0.34
LINC01560-202ENST00000624822 MEGF6O75095 1541 aa12.89□□□□□ -0.35
LINC01560-202ENST00000624822 TSPYL2Q9H2G4 693 aaPredicted RBP12.89□□□□□ -0.35
LINC01560-202ENST00000624822 OVOS2A0A0G2JMS6 1433 aa12.88□□□□□ -0.35
LINC01560-202ENST00000624822 PKD1L3Q7Z443 1732 aa12.88□□□□□ -0.35
LINC01560-202ENST00000624822 TNS1Q9HBL0 1735 aaKnown RBP12.88□□□□□ -0.35
LINC01560-202ENST00000624822 TATP17735 454 aaPredicted RBP12.88□□□□□ -0.35
LINC01560-202ENST00000624822 UPF1Q92900 1129 aaKnown RBP eCLIP12.88□□□□□ -0.35
LINC01560-202ENST00000624822 EYA1Q99502 592 aa12.88□□□□□ -0.35
LINC01560-202ENST00000624822 PPP2R1AP30153 589 aa12.87□□□□□ -0.35
LINC01560-202ENST00000624822 SF3B2Q13435 895 aaKnown RBP12.87□□□□□ -0.35
LINC01560-202ENST00000624822 FAM196AQ6ZSG2 479 aa12.87□□□□□ -0.35
LINC01560-202ENST00000624822 MS4A3Q96HJ5 214 aa12.87□□□□□ -0.35
LINC01560-202ENST00000624822 CFAP53Q96M91 514 aa12.87□□□□□ -0.35
LINC01560-202ENST00000624822 DOT1LQ8TEK3 1739 aa12.87□□□□□ -0.35
LINC01560-202ENST00000624822 PARD3Q8TEW0 1356 aa12.86□□□□□ -0.35
LINC01560-202ENST00000624822 DIAPH1O60610 1272 aaKnown RBP12.86□□□□□ -0.35
LINC01560-202ENST00000624822 VIRMAQ69YN4 1812 aaKnown RBP12.85□□□□□ -0.35
LINC01560-202ENST00000624822 PELP1Q8IZL8 1130 aaKnown RBP12.85□□□□□ -0.35
LINC01560-202ENST00000624822 MARCH10Q8NA82 808 aaPredicted RBP12.85□□□□□ -0.35
LINC01560-202ENST00000624822 ZCRB1Q8TBF4 217 aaKnown RBP12.85□□□□□ -0.35
LINC01560-202ENST00000624822 DDX54Q8TDD1 881 aaKnown RBP12.85□□□□□ -0.35
LINC01560-202ENST00000624822 IGSF1Q8N6C5 1336 aa12.85□□□□□ -0.35
LINC01560-202ENST00000624822 COL3A1P02461 1466 aaPredicted RBP12.85□□□□□ -0.35
LINC01560-202ENST00000624822 NHSQ6T4R5 1651 aa12.84□□□□□ -0.35
LINC01560-202ENST00000624822 U2SURPO15042 1029 aaKnown RBP12.84□□□□□ -0.35
LINC01560-202ENST00000624822 IL13P35225 146 aa12.84□□□□□ -0.35
LINC01560-202ENST00000624822 RALBP1Q15311 655 aa12.84□□□□□ -0.35
LINC01560-202ENST00000624822 MIER1Q8N108 512 aa12.84□□□□□ -0.35
LINC01560-202ENST00000624822 NCAPD2Q15021 1401 aa12.84□□□□□ -0.35
LINC01560-202ENST00000624822 EP400Q96L91 3159 aa12.83□□□□□ -0.35
LINC01560-202ENST00000624822 TRIM37O94972 964 aa12.83□□□□□ -0.36
LINC01560-202ENST00000624822 SULT6B1Q6IMI4 303 aa12.83□□□□□ -0.36
LINC01560-202ENST00000624822 POTEB2H3BUK9 544 aa12.82□□□□□ -0.36
LINC01560-202ENST00000624822 HMOX1P09601 288 aa12.82□□□□□ -0.36
LINC01560-202ENST00000624822 CCDC125Q86Z20 511 aa12.82□□□□□ -0.36
LINC01560-202ENST00000624822 BTAF1O14981 1849 aa12.82□□□□□ -0.36
LINC01560-202ENST00000624822 ITGB4P16144 1822 aa12.82□□□□□ -0.36
LINC01560-202ENST00000624822 PCDH11XQ9BZA7 1347 aa12.82□□□□□ -0.36
LINC01560-202ENST00000624822 PCDH11YQ9BZA8 1340 aa12.82□□□□□ -0.36
LINC01560-202ENST00000624822 AEBP1Q8IUX7 1158 aa12.81□□□□□ -0.36
LINC01560-202ENST00000624822 ACSBG1Q96GR2 724 aa12.81□□□□□ -0.36
LINC01560-202ENST00000624822 SPG7Q9UQ90 795 aa12.81□□□□□ -0.36
LINC01560-202ENST00000624822 NUDCQ9Y266 331 aa12.81□□□□□ -0.36
LINC01560-202ENST00000624822 BAG6P46379 1132 aa12.8□□□□□ -0.36
LINC01560-202ENST00000624822 MYBBP1AQ9BQG0 1328 aaKnown RBP12.8□□□□□ -0.36
LINC01560-202ENST00000624822 TOGARAM1Q9Y4F4 1720 aa12.79□□□□□ -0.36
LINC01560-202ENST00000624822 SYTL4Q96C24 671 aaPredicted RBP12.79□□□□□ -0.36
LINC01560-202ENST00000624822 PRKRIP1Q9H875 184 aaPredicted RBP12.79□□□□□ -0.36
LINC01560-202ENST00000624822 KDRP35968 1356 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms