RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 SMARCC1Q92922 1105 aaPredicted RBP17.89■□□□□ 0.45
PDLIM2-220ENST00000622226 SMTNL1A8MU46 457 aa17.89■□□□□ 0.45
PDLIM2-220ENST00000622226 EXOSC9Q06265 439 aaKnown RBP17.89■□□□□ 0.45
PDLIM2-220ENST00000622226 KLHL10Q6JEL2 608 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 LUZP1Q86V48 1076 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 TRIM22Q8IYM9 498 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 DNAAF4Q8WXU2 420 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 GGNBP2Q9H3C7 697 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 CCDC69A6NI79 296 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 KIF5CO60282 957 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 MICALCLQ6ZW33 695 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 GSTTP1A0A1W2PQM5 241 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 CCDC175P0C221 793 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 SPECC1Q5M775 1068 aa17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 JAKMIP1Q96N16 626 aaKnown RBP17.88■□□□□ 0.45
PDLIM2-220ENST00000622226 NEBLO76041 1014 aa17.87■□□□□ 0.45
PDLIM2-220ENST00000622226 TTC39AQ5SRH9 613 aa17.87■□□□□ 0.45
PDLIM2-220ENST00000622226 HIP1O00291 1037 aa17.87■□□□□ 0.45
PDLIM2-220ENST00000622226 TXNDC2Q86VQ3 553 aa17.87■□□□□ 0.45
PDLIM2-220ENST00000622226 CPLX3Q8WVH0 158 aa17.87■□□□□ 0.45
PDLIM2-220ENST00000622226 PDRG1Q9NUG6 133 aa17.87■□□□□ 0.45
PDLIM2-220ENST00000622226 USP25Q9UHP3 1055 aa17.87■□□□□ 0.45
PDLIM2-220ENST00000622226 RBM5P52756 815 aaKnown RBP eCLIP17.87■□□□□ 0.45
PDLIM2-220ENST00000622226 AAMPQ13685 434 aa17.87■□□□□ 0.45
PDLIM2-220ENST00000622226 CLIP2Q9UDT6 1046 aa17.87■□□□□ 0.45
PDLIM2-220ENST00000622226 TIGD1Q96MW7 591 aa17.86■□□□□ 0.45
PDLIM2-220ENST00000622226 ANKRD1Q15327 319 aa17.86■□□□□ 0.45
PDLIM2-220ENST00000622226 ABTB2Q8N961 1025 aa17.86■□□□□ 0.45
PDLIM2-220ENST00000622226 ZSWIM4Q9H7M6 989 aa17.86■□□□□ 0.45
PDLIM2-220ENST00000622226 GNAI3P08754 354 aa17.86■□□□□ 0.45
PDLIM2-220ENST00000622226 CTR9Q6PD62 1173 aa17.86■□□□□ 0.45
PDLIM2-220ENST00000622226 PLCD3Q8N3E9 789 aa17.86■□□□□ 0.45
PDLIM2-220ENST00000622226 TSR2Q969E8 191 aaKnown RBP17.86■□□□□ 0.45
PDLIM2-220ENST00000622226 SPA17Q15506 151 aa17.86■□□□□ 0.45
PDLIM2-220ENST00000622226 TMEM132EQ6IEE7 984 aa17.86■□□□□ 0.45
PDLIM2-220ENST00000622226 SMC1AQ14683 1233 aaKnown RBP17.85■□□□□ 0.45
PDLIM2-220ENST00000622226 ZSCAN12O43309 604 aa17.85■□□□□ 0.45
PDLIM2-220ENST00000622226 GCC1Q96CN9 775 aa17.85■□□□□ 0.45
PDLIM2-220ENST00000622226 CWC27Q6UX04 472 aaKnown RBP17.85■□□□□ 0.45
PDLIM2-220ENST00000622226 CCDC88BA6NC98 1476 aa17.85■□□□□ 0.45
PDLIM2-220ENST00000622226 STAMBPO95630 424 aa17.85■□□□□ 0.45
PDLIM2-220ENST00000622226 CTNNBL1Q8WYA6 563 aaPredicted RBP17.84■□□□□ 0.45
PDLIM2-220ENST00000622226 MATR3P43243 847 aaKnown RBP eCLIP17.84■□□□□ 0.45
PDLIM2-220ENST00000622226 CHMP4BP1P59074 171 aa17.84■□□□□ 0.45
PDLIM2-220ENST00000622226 BLOC1S2Q6QNY1 142 aa17.84■□□□□ 0.45
PDLIM2-220ENST00000622226 HLTFQ14527 1009 aaKnown RBP eCLIP17.84■□□□□ 0.45
PDLIM2-220ENST00000622226 TOM1L2Q6ZVM7 507 aa17.84■□□□□ 0.45
PDLIM2-220ENST00000622226 TCP11L2Q8N4U5 519 aa17.84■□□□□ 0.45
PDLIM2-220ENST00000622226 ZNF397Q8NF99 534 aaPredicted RBP17.84■□□□□ 0.45
PDLIM2-220ENST00000622226 SLC3A2P08195 630 aaKnown RBP17.84■□□□□ 0.45
PDLIM2-220ENST00000622226 MACROD2A1Z1Q3 448 aa17.83■□□□□ 0.45
PDLIM2-220ENST00000622226 GNAI2P04899 355 aa17.83■□□□□ 0.45
PDLIM2-220ENST00000622226 LIG1P18858 919 aa17.83■□□□□ 0.45
PDLIM2-220ENST00000622226 KIF2AO00139 706 aaPredicted RBP17.83■□□□□ 0.44
PDLIM2-220ENST00000622226 IMMTQ16891 758 aaKnown RBP17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 CABP2Q9NPB3 220 aa17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 NOL7Q9UMY1 257 aaKnown RBP17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 TMCO5BA8MYB1 307 aa17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 TOP1P11387 765 aaKnown RBP17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 ANAPC15P60006 121 aa17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 SKAP1Q86WV1 359 aa17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 VGFO15240 615 aaPredicted RBP17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 CKAP2LQ8IYA6 745 aa17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 CCDC160A6NGH7 325 aa17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 ECM2O94769 699 aaPredicted RBP17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 NLRP6P59044 892 aa17.82■□□□□ 0.44
PDLIM2-220ENST00000622226 CLGNO14967 610 aa17.81■□□□□ 0.44
PDLIM2-220ENST00000622226 MAATS1Q7Z4T9 603 aa17.81■□□□□ 0.44
PDLIM2-220ENST00000622226 SOGA3Q5TF21 947 aa17.81■□□□□ 0.44
PDLIM2-220ENST00000622226 CCDC7Q96M83 1385 aa17.81■□□□□ 0.44
PDLIM2-220ENST00000622226 SPATA24Q86W54 205 aa17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 CCDC83Q8IWF9 413 aa17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 GCOM1H8Y6P7 765 aaPredicted RBP17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 MYZAPP0CAP1 466 aa17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 CCDC30Q5VVM6 783 aa17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 CNNM1Q9NRU3 951 aa17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 RSPH14Q9UHP6 348 aa17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 CCDC158Q5M9N0 1113 aa17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 IRX3P78415 501 aaPredicted RBP17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 TWISTNBQ3B726 338 aaPredicted RBP17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 CHD1LQ86WJ1 897 aa17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 CASTP20810 708 aaKnown RBP17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 MTHFSP49914 203 aa17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 RNF216Q9NWF9 866 aaPredicted RBP17.8■□□□□ 0.44
PDLIM2-220ENST00000622226 IGSF3O75054 1194 aa17.79■□□□□ 0.44
PDLIM2-220ENST00000622226 BMP2KQ9NSY1 1161 aaPredicted RBP17.79■□□□□ 0.44
PDLIM2-220ENST00000622226 CIZ1Q9ULV3 898 aaPredicted RBP17.79■□□□□ 0.44
PDLIM2-220ENST00000622226 FKBP4Q02790 459 aaKnown RBP eCLIP17.79■□□□□ 0.44
PDLIM2-220ENST00000622226 PPM1EQ8WY54 764 aa17.79■□□□□ 0.44
PDLIM2-220ENST00000622226 CACNA2D4Q7Z3S7 1137 aa17.78■□□□□ 0.44
PDLIM2-220ENST00000622226 MCM3P25205 808 aa17.78■□□□□ 0.44
PDLIM2-220ENST00000622226 PAFAH1B1P43034 410 aa17.78■□□□□ 0.44
PDLIM2-220ENST00000622226 CCDC183Q5T5S1 534 aa17.78■□□□□ 0.44
PDLIM2-220ENST00000622226 NUP88Q99567 741 aaPredicted RBP17.78■□□□□ 0.44
PDLIM2-220ENST00000622226 PPP6R1Q9UPN7 881 aa17.78■□□□□ 0.44
PDLIM2-220ENST00000622226 GUCY1B3Q02153 619 aa17.78■□□□□ 0.44
PDLIM2-220ENST00000622226 SPINK5Q9NQ38 1064 aaPredicted RBP17.77■□□□□ 0.44
PDLIM2-220ENST00000622226 SLC4A2P04920 1241 aa17.77■□□□□ 0.44
PDLIM2-220ENST00000622226 FBF1Q8TES7 1133 aa17.77■□□□□ 0.44
PDLIM2-220ENST00000622226 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms