RNA–Protein interactions for RNA: ENST00000620864.1

COLCA1-205, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best) BASIC

Gene COLCA1, Length 8,098 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-205ENST00000620864 TUBB4BP68371 445 aa8.43□□□□□ -1.06
COLCA1-205ENST00000620864 DAAM2Q86T65 1068 aa8.43□□□□□ -1.06
COLCA1-205ENST00000620864 TAX1BP1Q86VP1 789 aa8.43□□□□□ -1.06
COLCA1-205ENST00000620864 KIF18AQ8NI77 898 aa8.43□□□□□ -1.06
COLCA1-205ENST00000620864 CCDC144AA2RUR9 1427 aa8.42□□□□□ -1.06
COLCA1-205ENST00000620864 FOXD4L6Q3SYB3 417 aaPredicted RBP8.42□□□□□ -1.06
COLCA1-205ENST00000620864 FOXD4L3Q6VB84 417 aaPredicted RBP8.42□□□□□ -1.06
COLCA1-205ENST00000620864 CNTROBQ8N137 903 aa8.42□□□□□ -1.06
COLCA1-205ENST00000620864 BRD2P25440 801 aaKnown RBP8.42□□□□□ -1.06
COLCA1-205ENST00000620864 ERC1Q8IUD2 1116 aa8.42□□□□□ -1.06
COLCA1-205ENST00000620864 CDK5RAP3Q96JB5 506 aa8.42□□□□□ -1.06
COLCA1-205ENST00000620864 EIF2S2P20042 333 aaKnown RBP8.42□□□□□ -1.06
COLCA1-205ENST00000620864 CEP57L1Q8IYX8 460 aa8.42□□□□□ -1.06
COLCA1-205ENST00000620864 C9orf78Q9NZ63 289 aaPredicted RBP8.42□□□□□ -1.06
COLCA1-205ENST00000620864 RXRBP28702 533 aa8.42□□□□□ -1.06
COLCA1-205ENST00000620864 ZNF397Q8NF99 534 aaPredicted RBP8.42□□□□□ -1.06
COLCA1-205ENST00000620864 CHAMP1Q96JM3 812 aa8.42□□□□□ -1.06
COLCA1-205ENST00000620864 C8orf37Q96NL8 207 aa8.42□□□□□ -1.06
COLCA1-205ENST00000620864 DYNC1I1O14576 645 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 CCDC175P0C221 793 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 PRKAG2Q9UGJ0 569 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 CFAP45Q9UL16 551 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 MTMR7Q9Y216 660 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 CCDC27Q2M243 656 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 TNMDQ9H2S6 317 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 STK24Q9Y6E0 443 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 DHX57Q6P158 1386 aaKnown RBP8.41□□□□□ -1.06
COLCA1-205ENST00000620864 CLGNO14967 610 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 SYNJ1O43426 1573 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 KRT85P78386 507 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 GTF2A1P52655 376 aaPredicted RBP8.41□□□□□ -1.06
COLCA1-205ENST00000620864 DDX46Q7L014 1031 aaKnown RBP8.41□□□□□ -1.06
COLCA1-205ENST00000620864 TOPBP1Q92547 1522 aa8.41□□□□□ -1.06
COLCA1-205ENST00000620864 RBM28Q9NW13 759 aaKnown RBP8.4□□□□□ -1.06
COLCA1-205ENST00000620864 SWAP70Q9UH65 585 aa8.4□□□□□ -1.06
COLCA1-205ENST00000620864 SLC3A2P08195 630 aaKnown RBP8.4□□□□□ -1.06
COLCA1-205ENST00000620864 TRIM21P19474 475 aaKnown RBP8.4□□□□□ -1.06
COLCA1-205ENST00000620864 EXOC6Q8TAG9 804 aa8.4□□□□□ -1.06
COLCA1-205ENST00000620864 TAOK3Q9H2K8 898 aa8.4□□□□□ -1.06
COLCA1-205ENST00000620864 RAB3GAP2Q9H2M9 1393 aa8.4□□□□□ -1.06
COLCA1-205ENST00000620864 STK25O00506 426 aa8.4□□□□□ -1.06
COLCA1-205ENST00000620864 EPB41L2O43491 1005 aaKnown RBP8.4□□□□□ -1.06
COLCA1-205ENST00000620864 TUBB4AP04350 444 aa8.4□□□□□ -1.06
COLCA1-205ENST00000620864 TMEM132EQ6IEE7 984 aa8.4□□□□□ -1.06
COLCA1-205ENST00000620864 NAA15Q9BXJ9 866 aaKnown RBP8.4□□□□□ -1.06
COLCA1-205ENST00000620864 ZNF772Q68DY9 489 aaPredicted RBP8.4□□□□□ -1.06
COLCA1-205ENST00000620864 DNAAF4Q8WXU2 420 aa8.4□□□□□ -1.06
COLCA1-205ENST00000620864 NECTIN2Q92692 538 aa8.4□□□□□ -1.07
COLCA1-205ENST00000620864 ERICH4A6NGS2 130 aa8.4□□□□□ -1.07
COLCA1-205ENST00000620864 POTEJP0CG39 1038 aa8.4□□□□□ -1.07
COLCA1-205ENST00000620864 PRIMPOLQ96LW4 560 aa8.4□□□□□ -1.07
COLCA1-205ENST00000620864 ARHGAP29Q52LW3 1261 aa8.39□□□□□ -1.07
COLCA1-205ENST00000620864 RNF214Q8ND24 703 aa8.39□□□□□ -1.07
COLCA1-205ENST00000620864 STK38Q15208 465 aa8.39□□□□□ -1.07
COLCA1-205ENST00000620864 PTPN14Q15678 1187 aa8.39□□□□□ -1.07
COLCA1-205ENST00000620864 ZNF644Q9H582 1327 aaPredicted RBP8.39□□□□□ -1.07
COLCA1-205ENST00000620864 IPO4Q8TEX9 1081 aaKnown RBP8.39□□□□□ -1.07
COLCA1-205ENST00000620864 PAIP2Q9BPZ3 127 aaKnown RBP8.39□□□□□ -1.07
COLCA1-205ENST00000620864 LAMC3Q9Y6N6 1575 aa8.39□□□□□ -1.07
COLCA1-205ENST00000620864 CAVIN2O95810 425 aa8.39□□□□□ -1.07
COLCA1-205ENST00000620864 KIF5CO60282 957 aa8.39□□□□□ -1.07
COLCA1-205ENST00000620864 CDKL5O76039 1030 aa8.39□□□□□ -1.07
COLCA1-205ENST00000620864 ARHGEF6Q15052 776 aa8.39□□□□□ -1.07
COLCA1-205ENST00000620864 NBPF1Q3BBV0 1214 aa8.39□□□□□ -1.07
COLCA1-205ENST00000620864 BMS1Q14692 1282 aaKnown RBP8.38□□□□□ -1.07
COLCA1-205ENST00000620864 BRPF3Q9ULD4 1205 aa8.38□□□□□ -1.07
COLCA1-205ENST00000620864 LMOD1P29536 600 aaPredicted RBP8.38□□□□□ -1.07
COLCA1-205ENST00000620864 SH3BGRP55822 239 aaPredicted RBP8.38□□□□□ -1.07
COLCA1-205ENST00000620864 TICAM2Q86XR7 235 aa8.38□□□□□ -1.07
COLCA1-205ENST00000620864 CPSF2Q9P2I0 782 aaKnown RBP8.38□□□□□ -1.07
COLCA1-205ENST00000620864 LRRFIP2Q9Y608 721 aaKnown RBP8.38□□□□□ -1.07
COLCA1-205ENST00000620864 PLEKHH1Q9ULM0 1364 aa8.38□□□□□ -1.07
COLCA1-205ENST00000620864 GTPBP4Q9BZE4 634 aaKnown RBP8.38□□□□□ -1.07
COLCA1-205ENST00000620864 HSPA4P34932 840 aa8.38□□□□□ -1.07
COLCA1-205ENST00000620864 GCC1Q96CN9 775 aa8.38□□□□□ -1.07
COLCA1-205ENST00000620864 PLIN1O60240 522 aa8.38□□□□□ -1.07
COLCA1-205ENST00000620864 PRPF40AO75400 957 aaKnown RBP8.38□□□□□ -1.07
COLCA1-205ENST00000620864 CCDC97Q96F63 343 aaPredicted RBP8.38□□□□□ -1.07
COLCA1-205ENST00000620864 IGF1RP08069 1367 aa8.38□□□□□ -1.07
COLCA1-205ENST00000620864 GSDMDP57764 484 aa8.38□□□□□ -1.07
COLCA1-205ENST00000620864 SKIDA1Q1XH10 827 aa8.38□□□□□ -1.07
COLCA1-205ENST00000620864 PAXBP1Q9Y5B6 917 aa8.38□□□□□ -1.07
COLCA1-205ENST00000620864 VGLL3A8MV65 326 aa8.37□□□□□ -1.07
COLCA1-205ENST00000620864 TMCO5BA8MYB1 307 aa8.37□□□□□ -1.07
COLCA1-205ENST00000620864 GNAI1P63096 354 aa8.37□□□□□ -1.07
COLCA1-205ENST00000620864 ZBTB33Q86T24 672 aa8.37□□□□□ -1.07
COLCA1-205ENST00000620864 ZSCAN31Q96LW9 406 aaPredicted RBP8.37□□□□□ -1.07
COLCA1-205ENST00000620864 KIF3CO14782 793 aa8.37□□□□□ -1.07
COLCA1-205ENST00000620864 ZC3H6P61129 1189 aaKnown RBP8.37□□□□□ -1.07
COLCA1-205ENST00000620864 VPS36Q86VN1 386 aa8.37□□□□□ -1.07
COLCA1-205ENST00000620864 NSRP1Q9H0G5 558 aaKnown RBP8.37□□□□□ -1.07
COLCA1-205ENST00000620864 GPBP1L1Q9HC44 474 aaPredicted RBP8.37□□□□□ -1.07
COLCA1-205ENST00000620864 MNAT1P51948 309 aa8.37□□□□□ -1.07
COLCA1-205ENST00000620864 COG6Q9Y2V7 657 aa8.37□□□□□ -1.07
COLCA1-205ENST00000620864 CASQ1P31415 396 aa8.37□□□□□ -1.07
COLCA1-205ENST00000620864 ABT1Q9ULW3 272 aaKnown RBP8.37□□□□□ -1.07
COLCA1-205ENST00000620864 HOOK3Q86VS8 718 aa8.37□□□□□ -1.07
COLCA1-205ENST00000620864 PRKRIP1Q9H875 184 aaPredicted RBP8.37□□□□□ -1.07
COLCA1-205ENST00000620864 SFPQP23246 707 aaKnown RBP eCLIP8.37□□□□□ -1.07
COLCA1-205ENST00000620864 RBM5P52756 815 aaKnown RBP eCLIP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms