RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 STRN4Q9NRL3 753 aa10.59□□□□□ -0.71
CPNE3-209ENST00000620393 KDRP35968 1356 aa10.59□□□□□ -0.71
CPNE3-209ENST00000620393 MAPK8IP3Q9UPT6 1336 aa10.58□□□□□ -0.71
CPNE3-209ENST00000620393 COL22A1Q8NFW1 1626 aaPredicted RBP10.58□□□□□ -0.72
CPNE3-209ENST00000620393 CAMTA1Q9Y6Y1 1673 aa10.58□□□□□ -0.72
CPNE3-209ENST00000620393 SENP3-EIF4A1A0A087X0R7 540 aa10.58□□□□□ -0.72
CPNE3-209ENST00000620393 HAX1O00165 279 aa10.58□□□□□ -0.72
CPNE3-209ENST00000620393 TMPOP42166 694 aaKnown RBP10.58□□□□□ -0.72
CPNE3-209ENST00000620393 FNBP4Q8N3X1 1017 aaPredicted RBP10.58□□□□□ -0.72
CPNE3-209ENST00000620393 SALL2Q9Y467 1007 aaPredicted RBP10.58□□□□□ -0.72
CPNE3-209ENST00000620393 ABCC6O95255 1503 aa10.58□□□□□ -0.72
CPNE3-209ENST00000620393 NEUROD2Q15784 382 aa10.57□□□□□ -0.72
CPNE3-209ENST00000620393 NFE2L2Q16236 605 aa10.57□□□□□ -0.72
CPNE3-209ENST00000620393 UNC5CLQ8IV45 518 aa10.57□□□□□ -0.72
CPNE3-209ENST00000620393 C8orf37Q96NL8 207 aa10.57□□□□□ -0.72
CPNE3-209ENST00000620393 PHRF1Q9P1Y6 1649 aaKnown RBP10.57□□□□□ -0.72
CPNE3-209ENST00000620393 ZBED9Q6R2W3 1325 aa10.57□□□□□ -0.72
CPNE3-209ENST00000620393 CRYBG1Q9Y4K1 1723 aa10.56□□□□□ -0.72
CPNE3-209ENST00000620393 RIPK4P57078 832 aa10.56□□□□□ -0.72
CPNE3-209ENST00000620393 CCDC27Q2M243 656 aa10.56□□□□□ -0.72
CPNE3-209ENST00000620393 MTHFSDQ2M296 383 aaKnown RBP10.56□□□□□ -0.72
CPNE3-209ENST00000620393 AMOTQ4VCS5 1084 aa10.56□□□□□ -0.72
CPNE3-209ENST00000620393 PLEKHO1Q53GL0 409 aaPredicted RBP10.56□□□□□ -0.72
CPNE3-209ENST00000620393 RAPGEF4Q8WZA2 1011 aa10.56□□□□□ -0.72
CPNE3-209ENST00000620393 RRP7AQ9Y3A4 280 aaKnown RBP10.56□□□□□ -0.72
CPNE3-209ENST00000620393 COL5A2P05997 1499 aaPredicted RBP10.55□□□□□ -0.72
CPNE3-209ENST00000620393 COL18A1P39060 1754 aa10.55□□□□□ -0.72
CPNE3-209ENST00000620393 SHPRHQ149N8 1683 aa10.55□□□□□ -0.72
CPNE3-209ENST00000620393 TATP17735 454 aaPredicted RBP10.55□□□□□ -0.72
CPNE3-209ENST00000620393 MEX3CQ5U5Q3 659 aaKnown RBP10.55□□□□□ -0.72
CPNE3-209ENST00000620393 WWC1Q8IX03 1113 aa10.55□□□□□ -0.72
CPNE3-209ENST00000620393 GAS2L2Q8NHY3 880 aa10.55□□□□□ -0.72
CPNE3-209ENST00000620393 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.55□□□□□ -0.722e-6■■□□□ 12.1
CPNE3-209ENST00000620393 NCAPD2Q15021 1401 aa10.55□□□□□ -0.72
CPNE3-209ENST00000620393 PDE3BQ13370 1112 aa10.54□□□□□ -0.72
CPNE3-209ENST00000620393 TRIM35Q9UPQ4 493 aa10.54□□□□□ -0.72
CPNE3-209ENST00000620393 ZNF521Q96K83 1311 aa10.54□□□□□ -0.72
CPNE3-209ENST00000620393 SLIT2O94813 1529 aa10.53□□□□□ -0.72
CPNE3-209ENST00000620393 CRB1P82279 1406 aa10.53□□□□□ -0.72
CPNE3-209ENST00000620393 LTN1O94822 1766 aa10.53□□□□□ -0.72
CPNE3-209ENST00000620393 HTATSF1O43719 755 aaKnown RBP10.53□□□□□ -0.72
CPNE3-209ENST00000620393 IL2RBP14784 551 aa10.53□□□□□ -0.72
CPNE3-209ENST00000620393 VPS72Q15906 364 aa10.53□□□□□ -0.72
CPNE3-209ENST00000620393 WDR63Q8IWG1 891 aa10.53□□□□□ -0.72
CPNE3-209ENST00000620393 USP35Q9P2H5 1018 aa10.53□□□□□ -0.72
CPNE3-209ENST00000620393 USP21Q9UK80 565 aa10.53□□□□□ -0.72
CPNE3-209ENST00000620393 THRAP3Q9Y2W1 955 aaKnown RBP10.53□□□□□ -0.72
CPNE3-209ENST00000620393 LRP6O75581 1613 aa10.52□□□□□ -0.73
CPNE3-209ENST00000620393 LMOD3Q0VAK6 560 aa10.52□□□□□ -0.73
CPNE3-209ENST00000620393 LHX8Q68G74 356 aa10.52□□□□□ -0.73
CPNE3-209ENST00000620393 SPG7Q9UQ90 795 aa10.52□□□□□ -0.73
CPNE3-209ENST00000620393 LMO7Q8WWI1 1683 aa10.52□□□□□ -0.73
CPNE3-209ENST00000620393 SPATA31A1Q5TZJ5 1347 aa10.52□□□□□ -0.73
CPNE3-209ENST00000620393 SPATA31A5Q5VU36 1347 aa10.52□□□□□ -0.73
CPNE3-209ENST00000620393 SPATA31A7Q8IWB4 1347 aa10.52□□□□□ -0.73
CPNE3-209ENST00000620393 PLEKHG2Q9H7P9 1386 aa10.52□□□□□ -0.73
CPNE3-209ENST00000620393 BCL9LQ86UU0 1499 aa10.51□□□□□ -0.73
CPNE3-209ENST00000620393 GNAT3A8MTJ3 354 aa10.51□□□□□ -0.73
CPNE3-209ENST00000620393 GOLGA2Q08379 1002 aa10.51□□□□□ -0.73
CPNE3-209ENST00000620393 ZCRB1Q8TBF4 217 aaKnown RBP10.51□□□□□ -0.73
CPNE3-209ENST00000620393 CDCA7Q9BWT1 371 aaPredicted RBP10.51□□□□□ -0.73
CPNE3-209ENST00000620393 CCDC9Q9Y3X0 531 aaKnown RBP10.51□□□□□ -0.73
CPNE3-209ENST00000620393 COL14A1Q05707 1796 aaKnown RBP10.51□□□□□ -0.73
CPNE3-209ENST00000620393 AFF2P51816 1311 aa10.51□□□□□ -0.73
CPNE3-209ENST00000620393 RGPD1P0DJD0 1748 aa10.5□□□□□ -0.73
CPNE3-209ENST00000620393 ABCA3Q99758 1704 aa10.5□□□□□ -0.73
CPNE3-209ENST00000620393 AKAP4Q5JQC9 854 aa10.5□□□□□ -0.73
CPNE3-209ENST00000620393 ZNF530Q6P9A1 599 aaPredicted RBP10.5□□□□□ -0.73
CPNE3-209ENST00000620393 BARGINQ6ZT62 677 aa10.5□□□□□ -0.73
CPNE3-209ENST00000620393 RTF1Q92541 710 aaKnown RBP10.5□□□□□ -0.73
CPNE3-209ENST00000620393 CDCA7LQ96GN5 454 aa10.5□□□□□ -0.73
CPNE3-209ENST00000620393 EXOC5O00471 708 aa10.49□□□□□ -0.73
CPNE3-209ENST00000620393 CENPBP07199 599 aaPredicted RBP10.49□□□□□ -0.73
CPNE3-209ENST00000620393 CALD1Q05682 793 aaKnown RBP10.49□□□□□ -0.73
CPNE3-209ENST00000620393 SLFN5Q08AF3 891 aa10.49□□□□□ -0.73
CPNE3-209ENST00000620393 C1orf141Q5JVX7 400 aa10.49□□□□□ -0.73
CPNE3-209ENST00000620393 CHADLQ6NUI6 762 aa10.49□□□□□ -0.73
CPNE3-209ENST00000620393 TRMT2AQ8IZ69 625 aaKnown RBP10.49□□□□□ -0.73
CPNE3-209ENST00000620393 IFNL2Q8IZJ0 200 aa10.49□□□□□ -0.73
CPNE3-209ENST00000620393 IL17REQ8NFR9 667 aa10.49□□□□□ -0.73
CPNE3-209ENST00000620393 TRPC5Q9UL62 973 aaPredicted RBP10.49□□□□□ -0.73
CPNE3-209ENST00000620393 IL16Q14005 1332 aa10.49□□□□□ -0.73
CPNE3-209ENST00000620393 E9PSI1 815 aa10.48□□□□□ -0.73
CPNE3-209ENST00000620393 PHKG2P15735 406 aa10.48□□□□□ -0.73
CPNE3-209ENST00000620393 DCTN1Q14203 1278 aa10.48□□□□□ -0.73
CPNE3-209ENST00000620393 GJD4Q96KN9 370 aaPredicted RBP10.48□□□□□ -0.73
CPNE3-209ENST00000620393 QTRT2Q9H974 415 aaKnown RBP10.48□□□□□ -0.73
CPNE3-209ENST00000620393 CYP27B1O15528 508 aa10.47□□□□□ -0.73
CPNE3-209ENST00000620393 ONECUT3O60422 494 aaPredicted RBP10.47□□□□□ -0.73
CPNE3-209ENST00000620393 HSP90AB1P08238 724 aaKnown RBP10.47□□□□□ -0.73
CPNE3-209ENST00000620393 MCM10Q7L590 875 aa10.47□□□□□ -0.73
CPNE3-209ENST00000620393 THUMPD2Q9BTF0 503 aaKnown RBP10.47□□□□□ -0.73
CPNE3-209ENST00000620393 LGR6Q9HBX8 967 aa10.47□□□□□ -0.73
CPNE3-209ENST00000620393 OVOS2A0A0G2JMS6 1433 aa10.47□□□□□ -0.73
CPNE3-209ENST00000620393 MEGF6O75095 1541 aa10.47□□□□□ -0.73
CPNE3-209ENST00000620393 RNMTO43148 476 aaKnown RBP10.46□□□□□ -0.73
CPNE3-209ENST00000620393 ZNF853P0CG23 659 aa10.46□□□□□ -0.73
CPNE3-209ENST00000620393 NKX1-1Q15270 411 aaPredicted RBP10.46□□□□□ -0.73
CPNE3-209ENST00000620393 DUSP27Q5VZP5 1158 aa10.46□□□□□ -0.73
CPNE3-209ENST00000620393 ZNF772Q68DY9 489 aaPredicted RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms