RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 DDX54Q8TDD1 881 aaKnown RBP15.19■□□□□ 0.02
MSH6-213ENST00000614496 LAMC1P11047 1609 aa15.19■□□□□ 0.02
MSH6-213ENST00000614496 GSPT1P15170 499 aaKnown RBP15.19■□□□□ 0.02
MSH6-213ENST00000614496 MYOM2P54296 1465 aa15.19■□□□□ 0.02
MSH6-213ENST00000614496 MX1P20591 662 aa15.18■□□□□ 0.02
MSH6-213ENST00000614496 HDGFL1Q5TGJ6 251 aa15.18■□□□□ 0.02
MSH6-213ENST00000614496 CCDC39Q9UFE4 941 aa15.18■□□□□ 0.02
MSH6-213ENST00000614496 FOXO3O43524 673 aa15.18■□□□□ 0.02
MSH6-213ENST00000614496 PRIM1P49642 420 aaKnown RBP15.18■□□□□ 0.02
MSH6-213ENST00000614496 CEP85Q6P2H3 762 aa15.18■□□□□ 0.02
MSH6-213ENST00000614496 USP26Q9BXU7 913 aa15.18■□□□□ 0.02
MSH6-213ENST00000614496 ZFYVE16Q7Z3T8 1539 aa15.18■□□□□ 0.02
MSH6-213ENST00000614496 PKP1Q13835 747 aa15.18■□□□□ 0.02
MSH6-213ENST00000614496 CLASP1Q7Z460 1538 aa15.18■□□□□ 0.02
MSH6-213ENST00000614496 MCM2P49736 904 aa15.17■□□□□ 0.02
MSH6-213ENST00000614496 GPATCH3Q96I76 525 aa15.17■□□□□ 0.02
MSH6-213ENST00000614496 RRP9O43818 475 aaKnown RBP15.17■□□□□ 0.02
MSH6-213ENST00000614496 IL13P35225 146 aa15.17■□□□□ 0.02
MSH6-213ENST00000614496 UBE2Q2Q8WVN8 375 aa15.17■□□□□ 0.02
MSH6-213ENST00000614496 PPIP5K1Q6PFW1 1433 aa15.17■□□□□ 0.02
MSH6-213ENST00000614496 YTHDC2Q9H6S0 1430 aaKnown RBP15.17■□□□□ 0.02
MSH6-213ENST00000614496 IFIT2P09913 472 aaKnown RBP15.17■□□□□ 0.02
MSH6-213ENST00000614496 EIF4A2Q14240 407 aaKnown RBP15.17■□□□□ 0.02
MSH6-213ENST00000614496 LRRFIP2Q9Y608 721 aaKnown RBP15.17■□□□□ 0.02
MSH6-213ENST00000614496 MAP3K4Q9Y6R4 1608 aa15.16■□□□□ 0.02
MSH6-213ENST00000614496 ZRSR1Q15695 479 aaKnown RBP15.16■□□□□ 0.02
MSH6-213ENST00000614496 SIRT2Q8IXJ6 389 aa15.16■□□□□ 0.02
MSH6-213ENST00000614496 TMX3Q96JJ7 454 aa15.16■□□□□ 0.02
MSH6-213ENST00000614496 BCL11BQ9C0K0 894 aaPredicted RBP15.16■□□□□ 0.02
MSH6-213ENST00000614496 PDE1AP54750 535 aa15.16■□□□□ 0.02
MSH6-213ENST00000614496 HSP90B1P14625 803 aaKnown RBP15.16■□□□□ 0.02
MSH6-213ENST00000614496 CWC27Q6UX04 472 aaKnown RBP15.16■□□□□ 0.02
MSH6-213ENST00000614496 ZCCHC11Q5TAX3 1644 aaKnown RBP15.16■□□□□ 0.02
MSH6-213ENST00000614496 SPHKAPQ2M3C7 1700 aa15.16■□□□□ 0.02
MSH6-213ENST00000614496 SRGAP3O43295 1099 aa15.15■□□□□ 0.02
MSH6-213ENST00000614496 CSPP1Q1MSJ5 1256 aa15.15■□□□□ 0.02
MSH6-213ENST00000614496 G2E3Q7L622 706 aa15.15■□□□□ 0.02
MSH6-213ENST00000614496 ATP6V1DQ9Y5K8 247 aa15.15■□□□□ 0.02
MSH6-213ENST00000614496 CHD1O14646 1710 aa15.15■□□□□ 0.02
MSH6-213ENST00000614496 AIMP1Q12904 312 aaKnown RBP15.15■□□□□ 0.02
MSH6-213ENST00000614496 UQCRHLA0A096LP55 91 aa15.14■□□□□ 0.01
MSH6-213ENST00000614496 UQCRHP07919 91 aa15.14■□□□□ 0.01
MSH6-213ENST00000614496 ZMYM3Q14202 1370 aa15.14■□□□□ 0.01
MSH6-213ENST00000614496 DTNBO60941 627 aa15.14■□□□□ 0.01
MSH6-213ENST00000614496 KIF1BO60333 1816 aa15.14■□□□□ 0.01
MSH6-213ENST00000614496 TET3O43151 1660 aa15.14■□□□□ 0.01
MSH6-213ENST00000614496 ZKSCAN1P17029 563 aaPredicted RBP15.14■□□□□ 0.01
MSH6-213ENST00000614496 USHBP1Q8N6Y0 703 aa15.14■□□□□ 0.01
MSH6-213ENST00000614496 ABCA6Q8N139 1617 aa15.13■□□□□ 0.01
MSH6-213ENST00000614496 FOSBP53539 338 aa15.13■□□□□ 0.01
MSH6-213ENST00000614496 FLIIQ13045 1269 aa15.13■□□□□ 0.01
MSH6-213ENST00000614496 NCBP3Q53F19 620 aaKnown RBP15.13■□□□□ 0.01
MSH6-213ENST00000614496 CNTROBQ8N137 903 aa15.13■□□□□ 0.01
MSH6-213ENST00000614496 ABTB2Q8N961 1025 aa15.13■□□□□ 0.01
MSH6-213ENST00000614496 RUFY2Q8WXA3 655 aa15.13■□□□□ 0.01
MSH6-213ENST00000614496 RBSNQ9H1K0 784 aa15.13■□□□□ 0.01
MSH6-213ENST00000614496 SPC24Q8NBT2 197 aa15.13■□□□□ 0.01
MSH6-213ENST00000614496 WDR33Q9C0J8 1336 aaKnown RBP15.13■□□□□ 0.01
MSH6-213ENST00000614496 PTPRCP08575 1304 aa15.12■□□□□ 0.01
MSH6-213ENST00000614496 MSH6P52701 1360 aa15.12■□□□□ 0.01
MSH6-213ENST00000614496 SRCIN1Q9C0H9 1055 aa15.12■□□□□ 0.01
MSH6-213ENST00000614496 ACEP12821 1306 aa15.12■□□□□ 0.01
MSH6-213ENST00000614496 CLASRPQ8N2M8 674 aaKnown RBP15.12■□□□□ 0.01
MSH6-213ENST00000614496 IQGAP1P46940 1657 aa15.11■□□□□ 0.01
MSH6-213ENST00000614496 ABCC4O15439 1325 aa15.11■□□□□ 0.01
MSH6-213ENST00000614496 SPG7Q9UQ90 795 aa15.1■□□□□ 0.01
MSH6-213ENST00000614496 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.1■□□□□ 0.01
MSH6-213ENST00000614496 ZFYVE9O95405 1425 aa15.1■□□□□ 0.01
MSH6-213ENST00000614496 ANXA1P04083 346 aa15.1■□□□□ 0.01
MSH6-213ENST00000614496 ESYT1Q9BSJ8 1104 aa15.1■□□□□ 0.01
MSH6-213ENST00000614496 USP25Q9UHP3 1055 aa15.1■□□□□ 0.01
MSH6-213ENST00000614496 SHROOM2Q13796 1616 aa15.1■□□□□ 0.01
MSH6-213ENST00000614496 GOLGA6L6A8MZA4 724 aa15.09■□□□□ 0.01
MSH6-213ENST00000614496 FERMT3Q86UX7 667 aa15.09■□□□□ 0.01
MSH6-213ENST00000614496 ZNF830Q96NB3 372 aaPredicted RBP15.09■□□□□ 0.01
MSH6-213ENST00000614496 RIMS2Q9UQ26 1411 aa15.09■□□□□ 0.01
MSH6-213ENST00000614496 MTHFSDQ2M296 383 aaKnown RBP15.09■□□□□ 0.01
MSH6-213ENST00000614496 LMBRD1Q9NUN5 540 aa15.09■□□□□ 0.01
MSH6-213ENST00000614496 G3BP1Q13283 466 aaKnown RBP eCLIP15.09■□□□□ 0.017e-7■■■■□ 20.1
MSH6-213ENST00000614496 C1orf141Q5JVX7 400 aa15.09■□□□□ 0.01
MSH6-213ENST00000614496 CCDC83Q8IWF9 413 aa15.09■□□□□ 0.01
MSH6-213ENST00000614496 BICD2Q8TD16 824 aa15.09■□□□□ 0.01
MSH6-213ENST00000614496 JAKMIP1Q96N16 626 aaKnown RBP15.09■□□□□ 0.01
MSH6-213ENST00000614496 GNAT3A8MTJ3 354 aa15.08■□□□□ 0.01
MSH6-213ENST00000614496 CASTP20810 708 aaKnown RBP15.08■□□□□ 0.01
MSH6-213ENST00000614496 LRSAM1Q6UWE0 723 aa15.08■□□□□ 0.01
MSH6-213ENST00000614496 SIL1Q9H173 461 aa15.08■□□□□ 0.01
MSH6-213ENST00000614496 ERBB4Q15303 1308 aa15.08■□□□□ 0
MSH6-213ENST00000614496 TTC21BQ7Z4L5 1316 aa15.08■□□□□ 0
MSH6-213ENST00000614496 H3BQV1 296 aa15.08■□□□□ 0
MSH6-213ENST00000614496 STK3Q13188 491 aa15.08■□□□□ 0
MSH6-213ENST00000614496 IFFO2Q5TF58 517 aa15.08■□□□□ 0
MSH6-213ENST00000614496 FBXW7Q969H0 707 aa15.08■□□□□ 0
MSH6-213ENST00000614496 ZNF330Q9Y3S2 320 aaPredicted RBP15.08■□□□□ 0
MSH6-213ENST00000614496 RNF17Q9BXT8 1623 aaKnown RBP15.07■□□□□ 0
MSH6-213ENST00000614496 HSP90AB4PQ58FF6 505 aa15.07■□□□□ 0
MSH6-213ENST00000614496 POGZQ7Z3K3 1410 aa15.07■□□□□ 0
MSH6-213ENST00000614496 EFCAB6Q5THR3 1501 aa15.07■□□□□ 0
MSH6-213ENST00000614496 A0A0G2JS52 829 aa15.07■□□□□ 0
MSH6-213ENST00000614496 TAF7Q15545 349 aaPredicted RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms