RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 USHBP1Q8N6Y0 703 aa11.84□□□□□ -0.51
SMAD4-217ENST00000611848 RAPGEF4Q8WZA2 1011 aa11.84□□□□□ -0.51
SMAD4-217ENST00000611848 TATP17735 454 aaPredicted RBP11.83□□□□□ -0.52
SMAD4-217ENST00000611848 FAM196AQ6ZSG2 479 aa11.83□□□□□ -0.52
SMAD4-217ENST00000611848 UPF1Q92900 1129 aaKnown RBP eCLIP11.83□□□□□ -0.52
SMAD4-217ENST00000611848 KAT6BQ8WYB5 2073 aa11.83□□□□□ -0.52
SMAD4-217ENST00000611848 TNS2Q63HR2 1409 aa11.83□□□□□ -0.52
SMAD4-217ENST00000611848 IL13P35225 146 aa11.82□□□□□ -0.52
SMAD4-217ENST00000611848 CCDC125Q86Z20 511 aa11.82□□□□□ -0.52
SMAD4-217ENST00000611848 CFAP53Q96M91 514 aa11.82□□□□□ -0.52
SMAD4-217ENST00000611848 IGSF1Q8N6C5 1336 aa11.82□□□□□ -0.52
SMAD4-217ENST00000611848 DIAPH1O60610 1272 aaKnown RBP11.82□□□□□ -0.52
SMAD4-217ENST00000611848 OVOS2A0A0G2JMS6 1433 aa11.82□□□□□ -0.52
SMAD4-217ENST00000611848 MEGF6O75095 1541 aa11.81□□□□□ -0.52
SMAD4-217ENST00000611848 FAM182BQ5T319 152 aa11.81□□□□□ -0.52
SMAD4-217ENST00000611848 MARCH10Q8NA82 808 aaPredicted RBP11.81□□□□□ -0.52
SMAD4-217ENST00000611848 ZCRB1Q8TBF4 217 aaKnown RBP11.81□□□□□ -0.52
SMAD4-217ENST00000611848 PLEKHG2Q9H7P9 1386 aa11.81□□□□□ -0.52
SMAD4-217ENST00000611848 EP400Q96L91 3159 aa11.8□□□□□ -0.52
SMAD4-217ENST00000611848 BCL9O00512 1426 aa11.8□□□□□ -0.52
SMAD4-217ENST00000611848 PRKRIP1Q9H875 184 aaPredicted RBP11.8□□□□□ -0.52
SMAD4-217ENST00000611848 RNF216Q9NWF9 866 aaPredicted RBP11.8□□□□□ -0.52
SMAD4-217ENST00000611848 RGPD1P0DJD0 1748 aa11.8□□□□□ -0.52
SMAD4-217ENST00000611848 COL3A1P02461 1466 aaPredicted RBP11.79□□□□□ -0.52
SMAD4-217ENST00000611848 RTN4Q9NQC3 1192 aaKnown RBP11.79□□□□□ -0.52
SMAD4-217ENST00000611848 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.79□□□□□ -0.526e-8■□□□□ 8.4
SMAD4-217ENST00000611848 KDRP35968 1356 aa11.79□□□□□ -0.52
SMAD4-217ENST00000611848 SBF2Q86WG5 1849 aa11.79□□□□□ -0.52
SMAD4-217ENST00000611848 SF3B2Q13435 895 aaKnown RBP11.78□□□□□ -0.52
SMAD4-217ENST00000611848 SULT6B1Q6IMI4 303 aa11.78□□□□□ -0.52
SMAD4-217ENST00000611848 NUDCQ9Y266 331 aa11.78□□□□□ -0.52
SMAD4-217ENST00000611848 DDX54Q8TDD1 881 aaKnown RBP11.78□□□□□ -0.52
SMAD4-217ENST00000611848 SPG7Q9UQ90 795 aa11.78□□□□□ -0.52
SMAD4-217ENST00000611848 PKD1L3Q7Z443 1732 aa11.77□□□□□ -0.52
SMAD4-217ENST00000611848 SHANK3Q9BYB0 1731 aa11.77□□□□□ -0.52
SMAD4-217ENST00000611848 MYBBP1AQ9BQG0 1328 aaKnown RBP11.77□□□□□ -0.53
SMAD4-217ENST00000611848 PCDH11XQ9BZA7 1347 aa11.77□□□□□ -0.53
SMAD4-217ENST00000611848 PCDH11YQ9BZA8 1340 aa11.77□□□□□ -0.53
SMAD4-217ENST00000611848 U2SURPO15042 1029 aaKnown RBP11.76□□□□□ -0.53
SMAD4-217ENST00000611848 TRIM37O94972 964 aa11.76□□□□□ -0.53
SMAD4-217ENST00000611848 AMOTQ4VCS5 1084 aa11.76□□□□□ -0.53
SMAD4-217ENST00000611848 PLEKHO1Q53GL0 409 aaPredicted RBP11.76□□□□□ -0.53
SMAD4-217ENST00000611848 AEBP1Q8IUX7 1158 aa11.76□□□□□ -0.53
SMAD4-217ENST00000611848 CYP27B1O15528 508 aa11.75□□□□□ -0.53
SMAD4-217ENST00000611848 HMOX1P09601 288 aa11.75□□□□□ -0.53
SMAD4-217ENST00000611848 BCL11BQ9C0K0 894 aaPredicted RBP11.75□□□□□ -0.53
SMAD4-217ENST00000611848 BAG6P46379 1132 aa11.74□□□□□ -0.53
SMAD4-217ENST00000611848 IFNL2Q8IZJ0 200 aa11.74□□□□□ -0.53
SMAD4-217ENST00000611848 TNS1Q9HBL0 1735 aaKnown RBP11.74□□□□□ -0.53
SMAD4-217ENST00000611848 SUPT16HQ9Y5B9 1047 aaKnown RBP11.74□□□□□ -0.53
SMAD4-217ENST00000611848 NKX1-1Q15270 411 aaPredicted RBP11.73□□□□□ -0.53
SMAD4-217ENST00000611848 APBA3O96018 575 aa11.72□□□□□ -0.53
SMAD4-217ENST00000611848 U2AF1L5P0DN76 240 aaPredicted RBP11.72□□□□□ -0.53
SMAD4-217ENST00000611848 PHKG2P15735 406 aa11.72□□□□□ -0.53
SMAD4-217ENST00000611848 U2AF1Q01081 240 aaKnown RBP eCLIP11.72□□□□□ -0.53
SMAD4-217ENST00000611848 CCDC184Q52MB2 194 aa11.72□□□□□ -0.53
SMAD4-217ENST00000611848 ACSBG1Q96GR2 724 aa11.72□□□□□ -0.53
SMAD4-217ENST00000611848 NHSQ6T4R5 1651 aa11.72□□□□□ -0.53
SMAD4-217ENST00000611848 FCHSD2O94868 740 aa11.71□□□□□ -0.53
SMAD4-217ENST00000611848 HSP90AB1P08238 724 aaKnown RBP11.71□□□□□ -0.53
SMAD4-217ENST00000611848 ZNF530Q6P9A1 599 aaPredicted RBP11.71□□□□□ -0.53
SMAD4-217ENST00000611848 KCNQ2O43526 872 aa11.71□□□□□ -0.54
SMAD4-217ENST00000611848 DEFB132Q7Z7B7 95 aa11.71□□□□□ -0.54
SMAD4-217ENST00000611848 RSPH6AQ9H0K4 717 aa11.71□□□□□ -0.54
SMAD4-217ENST00000611848 PLSCR1O15162 318 aa11.7□□□□□ -0.54
SMAD4-217ENST00000611848 PRIM1P49642 420 aaKnown RBP11.7□□□□□ -0.54
SMAD4-217ENST00000611848 C1orf141Q5JVX7 400 aa11.7□□□□□ -0.54
SMAD4-217ENST00000611848 PNNQ9H307 717 aaKnown RBP11.7□□□□□ -0.54
SMAD4-217ENST00000611848 DOT1LQ8TEK3 1739 aa11.7□□□□□ -0.54
SMAD4-217ENST00000611848 PRKAR2BP31323 418 aa11.69□□□□□ -0.54
SMAD4-217ENST00000611848 EN1Q05925 392 aaPredicted RBP11.69□□□□□ -0.54
SMAD4-217ENST00000611848 AKAP4Q5JQC9 854 aa11.69□□□□□ -0.54
SMAD4-217ENST00000611848 PTF1AQ7RTS3 328 aa11.69□□□□□ -0.54
SMAD4-217ENST00000611848 SYTL4Q96C24 671 aaPredicted RBP11.69□□□□□ -0.54
SMAD4-217ENST00000611848 MRS2Q9HD23 443 aa11.69□□□□□ -0.54
SMAD4-217ENST00000611848 BTAF1O14981 1849 aa11.69□□□□□ -0.54
SMAD4-217ENST00000611848 RGPD3A6NKT7 1758 aaPredicted RBP11.68□□□□□ -0.54
SMAD4-217ENST00000611848 RGPD4Q7Z3J3 1758 aa11.68□□□□□ -0.54
SMAD4-217ENST00000611848 DCAF8L1A6NGE4 600 aa11.68□□□□□ -0.54
SMAD4-217ENST00000611848 NEFMP07197 916 aa11.68□□□□□ -0.54
SMAD4-217ENST00000611848 HNRNPUQ00839 825 aaKnown RBP eCLIP11.68□□□□□ -0.54
SMAD4-217ENST00000611848 CACNB1Q02641 598 aaPredicted RBP11.68□□□□□ -0.54
SMAD4-217ENST00000611848 MTHFSDQ2M296 383 aaKnown RBP11.68□□□□□ -0.54
SMAD4-217ENST00000611848 GAS2L2Q8NHY3 880 aa11.68□□□□□ -0.54
SMAD4-217ENST00000611848 DCAF5Q96JK2 942 aa11.68□□□□□ -0.54
SMAD4-217ENST00000611848 CAMKK2Q96RR4 588 aa11.68□□□□□ -0.54
SMAD4-217ENST00000611848 ITGB4P16144 1822 aa11.68□□□□□ -0.54
SMAD4-217ENST00000611848 ERVV-2B6SEH9 535 aa11.68□□□□□ -0.54
SMAD4-217ENST00000611848 TOGARAM1Q9Y4F4 1720 aa11.67□□□□□ -0.54
SMAD4-217ENST00000611848 EZH2Q15910 746 aaKnown RBP11.67□□□□□ -0.54
SMAD4-217ENST00000611848 WDR43Q15061 677 aaKnown RBP eCLIP11.66□□□□□ -0.54
SMAD4-217ENST00000611848 MPRIPQ6WCQ1 1025 aa11.66□□□□□ -0.54
SMAD4-217ENST00000611848 PHACTR3Q96KR7 559 aa11.66□□□□□ -0.54
SMAD4-217ENST00000611848 VIRMAQ69YN4 1812 aaKnown RBP11.66□□□□□ -0.54
SMAD4-217ENST00000611848 SCN11AQ9UI33 1791 aa11.66□□□□□ -0.54
SMAD4-217ENST00000611848 HOXD11P31277 338 aaPredicted RBP11.65□□□□□ -0.54
SMAD4-217ENST00000611848 PELP1Q8IZL8 1130 aaKnown RBP11.65□□□□□ -0.54
SMAD4-217ENST00000611848 TMOD3Q9NYL9 352 aa11.65□□□□□ -0.54
SMAD4-217ENST00000611848 KDM6AO15550 1401 aaPredicted RBP11.65□□□□□ -0.55
SMAD4-217ENST00000611848 PIGBQ92521 554 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms