RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ZNF395Q9H8N7 513 aaPredicted RBP8.89□□□□□ -0.99
LINC00540-201ENST00000611481 FBXO31Q5XUX0 539 aaPredicted RBP8.88□□□□□ -0.99
LINC00540-201ENST00000611481 TMPRSS4Q9NRS4 437 aa8.88□□□□□ -0.99
LINC00540-201ENST00000611481 CADPSQ9ULU8 1353 aa8.87□□□□□ -0.99
LINC00540-201ENST00000611481 ADH1AP07327 375 aa8.87□□□□□ -0.99
LINC00540-201ENST00000611481 ZNF784Q8NCA9 323 aaPredicted RBP8.87□□□□□ -0.99
LINC00540-201ENST00000611481 DDRGK1Q96HY6 314 aa8.87□□□□□ -0.99
LINC00540-201ENST00000611481 CEP164Q9UPV0 1460 aa8.86□□□□□ -0.99
LINC00540-201ENST00000611481 RAB15P59190 212 aa8.86□□□□□ -0.99
LINC00540-201ENST00000611481 DZIP3Q86Y13 1208 aaKnown RBP8.86□□□□□ -0.99
LINC00540-201ENST00000611481 WHAMMQ8TF30 809 aa8.86□□□□□ -0.99
LINC00540-201ENST00000611481 SENP3-EIF4A1A0A087X0R7 540 aa8.85□□□□□ -0.99
LINC00540-201ENST00000611481 ERVH48-1M5A8F1 160 aa8.85□□□□□ -0.99
LINC00540-201ENST00000611481 ARHGEF15O94989 841 aa8.85□□□□□ -0.99
LINC00540-201ENST00000611481 PTGIRP43119 386 aa8.85□□□□□ -0.99
LINC00540-201ENST00000611481 SMARCA4P51532 1647 aa8.84□□□□□ -0.99
LINC00540-201ENST00000611481 LILRA1O75019 489 aa8.84□□□□□ -0.99
LINC00540-201ENST00000611481 MARSP56192 900 aaKnown RBP8.84□□□□□ -0.99
LINC00540-201ENST00000611481 TRIM52Q96A61 297 aa8.84□□□□□ -0.99
LINC00540-201ENST00000611481 KDM4CQ9H3R0 1056 aa8.84□□□□□ -0.99
LINC00540-201ENST00000611481 ADD1P35611 737 aaKnown RBP8.83□□□□□ -1
LINC00540-201ENST00000611481 FOXD4L5Q5VV16 416 aaPredicted RBP8.83□□□□□ -1
LINC00540-201ENST00000611481 EPS8L1Q8TE68 723 aa8.83□□□□□ -1
LINC00540-201ENST00000611481 FAM117AQ9C073 453 aa8.83□□□□□ -1
LINC00540-201ENST00000611481 RSF1Q96T23 1441 aaPredicted RBP8.82□□□□□ -1
LINC00540-201ENST00000611481 ESPNB1AK53 854 aa8.82□□□□□ -1
LINC00540-201ENST00000611481 ADAMTS2O95450 1211 aa8.82□□□□□ -1
LINC00540-201ENST00000611481 USP17L8P0C7I0 530 aa8.82□□□□□ -1
LINC00540-201ENST00000611481 IRS1P35568 1242 aa8.82□□□□□ -1
LINC00540-201ENST00000611481 LYSMD3Q7Z3D4 306 aa8.82□□□□□ -1
LINC00540-201ENST00000611481 KDF1Q8NAX2 398 aaPredicted RBP8.82□□□□□ -1
LINC00540-201ENST00000611481 LMTK3Q96Q04 1460 aa8.82□□□□□ -1
LINC00540-201ENST00000611481 SRSF11Q05519 484 aaKnown RBP8.81□□□□□ -1
LINC00540-201ENST00000611481 SEPT12Q8IYM1 358 aa8.81□□□□□ -1
LINC00540-201ENST00000611481 SCARF2Q96GP6 870 aaPredicted RBP8.81□□□□□ -1
LINC00540-201ENST00000611481 GPBP1L1Q9HC44 474 aaPredicted RBP8.81□□□□□ -1
LINC00540-201ENST00000611481 HMX1Q9NP08 348 aaPredicted RBP8.81□□□□□ -1
LINC00540-201ENST00000611481 DNMT3AQ9Y6K1 912 aaPredicted RBP8.81□□□□□ -1
LINC00540-201ENST00000611481 MAP3K10Q02779 954 aa8.8□□□□□ -1
LINC00540-201ENST00000611481 KANK3Q6NY19 840 aa8.8□□□□□ -1
LINC00540-201ENST00000611481 ZNF608Q9ULD9 1512 aaPredicted RBP8.8□□□□□ -1
LINC00540-201ENST00000611481 FBXO41Q8TF61 875 aa8.79□□□□□ -1
LINC00540-201ENST00000611481 CYLDQ9NQC7 956 aa8.79□□□□□ -1
LINC00540-201ENST00000611481 FANCD2Q9BXW9 1451 aa8.78□□□□□ -1
LINC00540-201ENST00000611481 IGHA1P01876 353 aa8.78□□□□□ -1
LINC00540-201ENST00000611481 RNF144AP50876 292 aaPredicted RBP8.78□□□□□ -1
LINC00540-201ENST00000611481 LYPD4Q6UWN0 246 aa8.78□□□□□ -1
LINC00540-201ENST00000611481 CUEDC1Q9NWM3 386 aaPredicted RBP8.78□□□□□ -1
LINC00540-201ENST00000611481 SOCS7O14512 581 aa8.77□□□□□ -1.01
LINC00540-201ENST00000611481 GAS6Q14393 721 aa8.77□□□□□ -1.01
LINC00540-201ENST00000611481 GPAT2Q6NUI2 795 aa8.77□□□□□ -1.01
LINC00540-201ENST00000611481 PRICKLE2Q7Z3G6 844 aa8.77□□□□□ -1.01
LINC00540-201ENST00000611481 GMCL1Q96IK5 515 aa8.77□□□□□ -1.01
LINC00540-201ENST00000611481 URB2Q14146 1524 aaKnown RBP8.76□□□□□ -1.01
LINC00540-201ENST00000611481 RHOQP17081 205 aa8.76□□□□□ -1.01
LINC00540-201ENST00000611481 RFC5P40937 340 aa8.76□□□□□ -1.01
LINC00540-201ENST00000611481 FOXK2Q01167 660 aa8.76□□□□□ -1.01
LINC00540-201ENST00000611481 ENAMQ9NRM1 1142 aa8.76□□□□□ -1.01
LINC00540-201ENST00000611481 CHD1O14646 1710 aa8.76□□□□□ -1.01
LINC00540-201ENST00000611481 ATP5J2-PTCD1G3V325 749 aa8.75□□□□□ -1.01
LINC00540-201ENST00000611481 CELA2BP08218 269 aaPredicted RBP8.75□□□□□ -1.01
LINC00540-201ENST00000611481 FOXR1Q6PIV2 292 aa8.75□□□□□ -1.01
LINC00540-201ENST00000611481 CCDC125Q86Z20 511 aa8.75□□□□□ -1.01
LINC00540-201ENST00000611481 TRIM22Q8IYM9 498 aa8.75□□□□□ -1.01
LINC00540-201ENST00000611481 GPC1P35052 558 aa8.74□□□□□ -1.01
LINC00540-201ENST00000611481 TRIM34Q9BYJ4 488 aa8.74□□□□□ -1.01
LINC00540-201ENST00000611481 ZBBXA8MT70 800 aa8.73□□□□□ -1.01
LINC00540-201ENST00000611481 MEN1O00255 615 aa8.73□□□□□ -1.01
LINC00540-201ENST00000611481 ZNF837Q96EG3 531 aaPredicted RBP8.73□□□□□ -1.01
LINC00540-201ENST00000611481 MBIPQ9NS73 344 aa8.73□□□□□ -1.01
LINC00540-201ENST00000611481 PCDHB9Q9Y5E1 797 aa8.73□□□□□ -1.01
LINC00540-201ENST00000611481 ERCC6L2Q5T890 1561 aa8.73□□□□□ -1.01
LINC00540-201ENST00000611481 GIGYF1O75420 1035 aaPredicted RBP8.72□□□□□ -1.01
LINC00540-201ENST00000611481 TMEM259Q4ZIN3 620 aa8.72□□□□□ -1.01
LINC00540-201ENST00000611481 RIPOR1Q6ZS17 1223 aa8.72□□□□□ -1.01
LINC00540-201ENST00000611481 PEG3Q9GZU2 1588 aa8.72□□□□□ -1.01
LINC00540-201ENST00000611481 H7C1W4 665 aa8.71□□□□□ -1.02
LINC00540-201ENST00000611481 ILDR2Q71H61 639 aa8.71□□□□□ -1.02
LINC00540-201ENST00000611481 DYRK1BQ9Y463 629 aa8.71□□□□□ -1.02
LINC00540-201ENST00000611481 IFT140Q96RY7 1462 aa8.7□□□□□ -1.02
LINC00540-201ENST00000611481 A0A1W2PRU2 124 aa8.7□□□□□ -1.02
LINC00540-201ENST00000611481 DBN1Q16643 649 aa8.7□□□□□ -1.02
LINC00540-201ENST00000611481 RNF20Q5VTR2 975 aa8.7□□□□□ -1.02
LINC00540-201ENST00000611481 GOPCQ9HD26 462 aa8.7□□□□□ -1.02
LINC00540-201ENST00000611481 IGF1RP08069 1367 aa8.7□□□□□ -1.02
LINC00540-201ENST00000611481 PHF20L1A8MW92 1017 aa8.69□□□□□ -1.02
LINC00540-201ENST00000611481 GPR25O00155 361 aa8.69□□□□□ -1.02
LINC00540-201ENST00000611481 FBXO45P0C2W1 286 aa8.69□□□□□ -1.02
LINC00540-201ENST00000611481 ERVK-9P63128 1117 aa8.69□□□□□ -1.02
LINC00540-201ENST00000611481 SLC27A3Q5K4L6 730 aa8.69□□□□□ -1.02
LINC00540-201ENST00000611481 CC2D2BQ6DHV5 1058 aa8.69□□□□□ -1.02
LINC00540-201ENST00000611481 PCMTD1Q96MG8 357 aaPredicted RBP8.69□□□□□ -1.02
LINC00540-201ENST00000611481 NLRP3Q96P20 1036 aa8.69□□□□□ -1.02
LINC00540-201ENST00000611481 HECW2Q9P2P5 1572 aa8.69□□□□□ -1.02
LINC00540-201ENST00000611481 BCRP11274 1271 aa8.68□□□□□ -1.02
LINC00540-201ENST00000611481 POU4F2Q12837 409 aa8.68□□□□□ -1.02
LINC00540-201ENST00000611481 TRERF1Q96PN7 1200 aa8.68□□□□□ -1.02
LINC00540-201ENST00000611481 EIF4G3O43432 1585 aaKnown RBP8.68□□□□□ -1.02
LINC00540-201ENST00000611481 MCCD1P59942 119 aaPredicted RBP8.67□□□□□ -1.02
LINC00540-201ENST00000611481 PODNQ7Z5L7 613 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms