RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PARP4Q9UKK3 1724 aaKnown RBP19■□□□□ 0.63
UPF1-211ENST00000600868 OVOS2A0A0G2JMS6 1433 aa19■□□□□ 0.63
UPF1-211ENST00000600868 MAPK8IP3Q9UPT6 1336 aa19■□□□□ 0.63
UPF1-211ENST00000600868 GLI3P10071 1580 aa18.99■□□□□ 0.63
UPF1-211ENST00000600868 AMOTQ4VCS5 1084 aa18.99■□□□□ 0.63
UPF1-211ENST00000600868 PLEKHO1Q53GL0 409 aaPredicted RBP18.99■□□□□ 0.63
UPF1-211ENST00000600868 RGS17Q9UGC6 210 aaPredicted RBP18.98■□□□□ 0.63
UPF1-211ENST00000600868 PHF23Q9BUL5 403 aaPredicted RBP18.97■□□□□ 0.63
UPF1-211ENST00000600868 APAF1O14727 1248 aa18.96■□□□□ 0.63
UPF1-211ENST00000600868 ONECUT3O60422 494 aaPredicted RBP18.96■□□□□ 0.63
UPF1-211ENST00000600868 GAS2L2Q8NHY3 880 aa18.96■□□□□ 0.63
UPF1-211ENST00000600868 SPG7Q9UQ90 795 aa18.96■□□□□ 0.63
UPF1-211ENST00000600868 PKD1L3Q7Z443 1732 aa18.96■□□□□ 0.63
UPF1-211ENST00000600868 NFE2L2Q16236 605 aa18.95■□□□□ 0.62
UPF1-211ENST00000600868 FAM98CQ17RN3 349 aaKnown RBP18.95■□□□□ 0.62
UPF1-211ENST00000600868 MTHFSDQ2M296 383 aaKnown RBP18.95■□□□□ 0.62
UPF1-211ENST00000600868 NCBP3Q53F19 620 aaKnown RBP18.95■□□□□ 0.62
UPF1-211ENST00000600868 TMPOP42166 694 aaKnown RBP18.94■□□□□ 0.62
UPF1-211ENST00000600868 RBM6P78332 1123 aaKnown RBP18.94■□□□□ 0.62
UPF1-211ENST00000600868 NGEFQ8N5V2 710 aa18.94■□□□□ 0.62
UPF1-211ENST00000600868 ZCRB1Q8TBF4 217 aaKnown RBP18.94■□□□□ 0.62
UPF1-211ENST00000600868 THSD7AQ9UPZ6 1657 aa18.93■□□□□ 0.62
UPF1-211ENST00000600868 EXOC5O00471 708 aa18.92■□□□□ 0.62
UPF1-211ENST00000600868 ZNF530Q6P9A1 599 aaPredicted RBP18.92■□□□□ 0.62
UPF1-211ENST00000600868 TNS2Q63HR2 1409 aa18.91■□□□□ 0.62
UPF1-211ENST00000600868 DDB1Q16531 1140 aa18.91■□□□□ 0.62
UPF1-211ENST00000600868 PCDH11XQ9BZA7 1347 aa18.91■□□□□ 0.62
UPF1-211ENST00000600868 PCDH11YQ9BZA8 1340 aa18.91■□□□□ 0.62
UPF1-211ENST00000600868 SHANK3Q9BYB0 1731 aa18.91■□□□□ 0.62
UPF1-211ENST00000600868 LRRC37A3O60309 1634 aa18.9■□□□□ 0.62
UPF1-211ENST00000600868 RXRBP28702 533 aa18.9■□□□□ 0.62
UPF1-211ENST00000600868 RIPK4P57078 832 aa18.9■□□□□ 0.62
UPF1-211ENST00000600868 POTEAQ6S8J7 498 aa18.9■□□□□ 0.62
UPF1-211ENST00000600868 RRP7AQ9Y3A4 280 aaKnown RBP18.9■□□□□ 0.62
UPF1-211ENST00000600868 CYP27B1O15528 508 aa18.89■□□□□ 0.61
UPF1-211ENST00000600868 HNRNPUQ00839 825 aaKnown RBP eCLIP18.89■□□□□ 0.61
UPF1-211ENST00000600868 CCDC27Q2M243 656 aa18.89■□□□□ 0.61
UPF1-211ENST00000600868 AKAP4Q5JQC9 854 aa18.89■□□□□ 0.61
UPF1-211ENST00000600868 C1orf141Q5JVX7 400 aa18.89■□□□□ 0.61
UPF1-211ENST00000600868 IFNL2Q8IZJ0 200 aa18.89■□□□□ 0.61
UPF1-211ENST00000600868 DLG5Q8TDM6 1919 aa18.88■□□□□ 0.61
UPF1-211ENST00000600868 GNAT3A8MTJ3 354 aa18.88■□□□□ 0.61
UPF1-211ENST00000600868 HTATSF1O43719 755 aaKnown RBP18.88■□□□□ 0.61
UPF1-211ENST00000600868 PHKG2P15735 406 aa18.88■□□□□ 0.61
UPF1-211ENST00000600868 LMOD3Q0VAK6 560 aa18.88■□□□□ 0.61
UPF1-211ENST00000600868 NEUROD2Q15784 382 aa18.88■□□□□ 0.61
UPF1-211ENST00000600868 SEPT12Q8IYM1 358 aa18.88■□□□□ 0.61
UPF1-211ENST00000600868 MAP3K5Q99683 1374 aa18.88■□□□□ 0.61
UPF1-211ENST00000600868 TRIM35Q9UPQ4 493 aa18.87■□□□□ 0.61
UPF1-211ENST00000600868 A0A0G2JS52 829 aa18.86■□□□□ 0.61
UPF1-211ENST00000600868 HSP90AB1P08238 724 aaKnown RBP18.86■□□□□ 0.61
UPF1-211ENST00000600868 MYT1Q01538 1121 aa18.86■□□□□ 0.61
UPF1-211ENST00000600868 NKX1-1Q15270 411 aaPredicted RBP18.86■□□□□ 0.61
UPF1-211ENST00000600868 DDX54Q8TDD1 881 aaKnown RBP18.86■□□□□ 0.61
UPF1-211ENST00000600868 SENP3-EIF4A1A0A087X0R7 540 aa18.85■□□□□ 0.61
UPF1-211ENST00000600868 PDE3BQ13370 1112 aa18.84■□□□□ 0.61
UPF1-211ENST00000600868 RTF1Q92541 710 aaKnown RBP18.84■□□□□ 0.61
UPF1-211ENST00000600868 SALL2Q9Y467 1007 aaPredicted RBP18.84■□□□□ 0.61
UPF1-211ENST00000600868 ADAMTS7Q9UKP4 1686 aa18.83■□□□□ 0.61
UPF1-211ENST00000600868 WWC1Q8IX03 1113 aa18.83■□□□□ 0.6
UPF1-211ENST00000600868 MARCH10Q8NA82 808 aaPredicted RBP18.83■□□□□ 0.6
UPF1-211ENST00000600868 DCAF5Q96JK2 942 aa18.83■□□□□ 0.6
UPF1-211ENST00000600868 ZBED9Q6R2W3 1325 aa18.82■□□□□ 0.6
UPF1-211ENST00000600868 ZNF521Q96K83 1311 aa18.82■□□□□ 0.6
UPF1-211ENST00000600868 MPRIPQ6WCQ1 1025 aa18.82■□□□□ 0.6
UPF1-211ENST00000600868 IL17REQ8NFR9 667 aa18.82■□□□□ 0.6
UPF1-211ENST00000600868 CEMIPQ8WUJ3 1361 aa18.81■□□□□ 0.6
UPF1-211ENST00000600868 RNMTO43148 476 aaKnown RBP18.81■□□□□ 0.6
UPF1-211ENST00000600868 MCM10Q7L590 875 aa18.81■□□□□ 0.6
UPF1-211ENST00000600868 YTHDC1Q96MU7 727 aaKnown RBP18.81■□□□□ 0.6
UPF1-211ENST00000600868 KDM6AO15550 1401 aaPredicted RBP18.81■□□□□ 0.6
UPF1-211ENST00000600868 SCN11AQ9UI33 1791 aa18.81■□□□□ 0.6
UPF1-211ENST00000600868 DCTN1Q14203 1278 aa18.8■□□□□ 0.6
UPF1-211ENST00000600868 WDR63Q8IWG1 891 aa18.8■□□□□ 0.6
UPF1-211ENST00000600868 LGR6Q9HBX8 967 aa18.8■□□□□ 0.6
UPF1-211ENST00000600868 RGS12O14924 1447 aa18.8■□□□□ 0.6
UPF1-211ENST00000600868 BRWD3Q6RI45 1802 aa18.79■□□□□ 0.6
UPF1-211ENST00000600868 CALD1Q05682 793 aaKnown RBP18.79■□□□□ 0.6
UPF1-211ENST00000600868 KRT27Q7Z3Y8 459 aa18.79■□□□□ 0.6
UPF1-211ENST00000600868 BCL9O00512 1426 aa18.79■□□□□ 0.6
UPF1-211ENST00000600868 VIRMAQ69YN4 1812 aaKnown RBP18.79■□□□□ 0.6
UPF1-211ENST00000600868 ERVV-2B6SEH9 535 aa18.78■□□□□ 0.6
UPF1-211ENST00000600868 THUMPD2Q9BTF0 503 aaKnown RBP18.78■□□□□ 0.6
UPF1-211ENST00000600868 IL16Q14005 1332 aa18.77■□□□□ 0.6
UPF1-211ENST00000600868 MRC1P22897 1456 aa18.76■□□□□ 0.59
UPF1-211ENST00000600868 TOGARAM1Q9Y4F4 1720 aa18.75■□□□□ 0.59
UPF1-211ENST00000600868 GOLGA2Q08379 1002 aa18.75■□□□□ 0.59
UPF1-211ENST00000600868 TEFQ10587 303 aa18.75■□□□□ 0.59
UPF1-211ENST00000600868 SLC52A2Q9HAB3 445 aa18.75■□□□□ 0.59
UPF1-211ENST00000600868 TAF7Q15545 349 aaPredicted RBP18.74■□□□□ 0.59
UPF1-211ENST00000600868 SIPA1L3O60292 1781 aaPredicted RBP18.73■□□□□ 0.59
UPF1-211ENST00000600868 ZNF853P0CG23 659 aa18.73■□□□□ 0.59
UPF1-211ENST00000600868 CABP4P57796 275 aa18.73■□□□□ 0.59
UPF1-211ENST00000600868 FAM196AQ6ZSG2 479 aa18.73■□□□□ 0.59
UPF1-211ENST00000600868 CFAP44Q96MT7 982 aa18.73■□□□□ 0.59
UPF1-211ENST00000600868 IFT57Q9NWB7 429 aa18.73■□□□□ 0.59
UPF1-211ENST00000600868 BABAM1Q9NWV8 329 aa18.73■□□□□ 0.59
UPF1-211ENST00000600868 DOT1LQ8TEK3 1739 aa18.72■□□□□ 0.59
UPF1-211ENST00000600868 GNAI1P63096 354 aa18.72■□□□□ 0.59
UPF1-211ENST00000600868 NFATC2IPQ8NCF5 419 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms