RNA–Protein interactions for RNA: ENST00000591584.1

VPS25-206, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 667 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-206ENST00000591584 MSH6P52701 1360 aa13.19□□□□□ -0.3
VPS25-206ENST00000591584 SLIT3O75094 1523 aa13.18□□□□□ -0.3
VPS25-206ENST00000591584 NFAT5O94916 1531 aa13.18□□□□□ -0.3
VPS25-206ENST00000591584 PHRF1Q9P1Y6 1649 aaKnown RBP13.18□□□□□ -0.3
VPS25-206ENST00000591584 IGHDP01880 384 aa13.18□□□□□ -0.3
VPS25-206ENST00000591584 ANP32AP39687 249 aaKnown RBP13.18□□□□□ -0.3
VPS25-206ENST00000591584 C8orf58Q8NAV2 365 aa13.18□□□□□ -0.3
VPS25-206ENST00000591584 PLEKHG2Q9H7P9 1386 aa13.18□□□□□ -0.3
VPS25-206ENST00000591584 PTPRCP08575 1304 aa13.17□□□□□ -0.3
VPS25-206ENST00000591584 MARF1Q9Y4F3 1742 aaKnown RBP13.17□□□□□ -0.3
VPS25-206ENST00000591584 DCTN1Q14203 1278 aa13.17□□□□□ -0.3
VPS25-206ENST00000591584 FAM161AQ3B820 660 aa13.17□□□□□ -0.3
VPS25-206ENST00000591584 PLEKHO1Q53GL0 409 aaPredicted RBP13.17□□□□□ -0.3
VPS25-206ENST00000591584 MCM10Q7L590 875 aa13.17□□□□□ -0.3
VPS25-206ENST00000591584 TMEM57Q8N5G2 664 aa13.17□□□□□ -0.3
VPS25-206ENST00000591584 TSPYL6Q8N831 410 aa13.17□□□□□ -0.3
VPS25-206ENST00000591584 ZBTB40Q9NUA8 1239 aa13.17□□□□□ -0.3
VPS25-206ENST00000591584 PCDHB15Q9Y5E8 787 aa13.17□□□□□ -0.3
VPS25-206ENST00000591584 TAF7Q15545 349 aaPredicted RBP13.16□□□□□ -0.3
VPS25-206ENST00000591584 TSPYL4Q9UJ04 414 aa13.16□□□□□ -0.3
VPS25-206ENST00000591584 MAP3K5Q99683 1374 aa13.16□□□□□ -0.3
VPS25-206ENST00000591584 DLG5Q8TDM6 1919 aa13.15□□□□□ -0.3
VPS25-206ENST00000591584 ABCC4O15439 1325 aa13.14□□□□□ -0.31
VPS25-206ENST00000591584 ZBTB7BO15156 539 aaPredicted RBP13.14□□□□□ -0.31
VPS25-206ENST00000591584 LTV1Q96GA3 475 aaPredicted RBP13.14□□□□□ -0.31
VPS25-206ENST00000591584 TNNQ9UQP3 1299 aa13.14□□□□□ -0.31
VPS25-206ENST00000591584 ELL2O00472 640 aaPredicted RBP13.13□□□□□ -0.31
VPS25-206ENST00000591584 AKAP4Q5JQC9 854 aa13.13□□□□□ -0.31
VPS25-206ENST00000591584 NBPF6Q5VWK0 638 aa13.13□□□□□ -0.31
VPS25-206ENST00000591584 INTS3Q68E01 1043 aaKnown RBP13.13□□□□□ -0.31
VPS25-206ENST00000591584 LMOD2Q6P5Q4 547 aa13.13□□□□□ -0.31
VPS25-206ENST00000591584 NBPF4Q96M43 638 aa13.13□□□□□ -0.31
VPS25-206ENST00000591584 NCAPD2Q15021 1401 aa13.13□□□□□ -0.31
VPS25-206ENST00000591584 KDM4FA0A1W2PPD8 638 aa13.12□□□□□ -0.31
VPS25-206ENST00000591584 HOXB7P09629 217 aa13.12□□□□□ -0.31
VPS25-206ENST00000591584 CCDC30Q5VVM6 783 aa13.12□□□□□ -0.31
VPS25-206ENST00000591584 SMC5Q8IY18 1101 aa13.12□□□□□ -0.31
VPS25-206ENST00000591584 GCC1Q96CN9 775 aa13.12□□□□□ -0.31
VPS25-206ENST00000591584 TRPM3Q9HCF6 1732 aaPredicted RBP13.12□□□□□ -0.31
VPS25-206ENST00000591584 HSPA2P54652 639 aa13.11□□□□□ -0.31
VPS25-206ENST00000591584 IL17REQ8NFR9 667 aa13.11□□□□□ -0.31
VPS25-206ENST00000591584 ANKRD24Q8TF21 1146 aa13.11□□□□□ -0.31
VPS25-206ENST00000591584 STK31Q9BXU1 1019 aa13.11□□□□□ -0.31
VPS25-206ENST00000591584 ABCC6O95255 1503 aa13.11□□□□□ -0.31
VPS25-206ENST00000591584 OVOS2A0A0G2JMS6 1433 aa13.11□□□□□ -0.31
VPS25-206ENST00000591584 LMTK3Q96Q04 1460 aa13.1□□□□□ -0.31
VPS25-206ENST00000591584 CEMIPQ8WUJ3 1361 aa13.1□□□□□ -0.31
VPS25-206ENST00000591584 RGS3P49796 1198 aa13.1□□□□□ -0.31
VPS25-206ENST00000591584 IPO9Q96P70 1041 aaKnown RBP13.1□□□□□ -0.31
VPS25-206ENST00000591584 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.1□□□□□ -0.31
VPS25-206ENST00000591584 PDZRN3Q9UPQ7 1066 aa13.1□□□□□ -0.31
VPS25-206ENST00000591584 SPATA31A3Q5VYP0 1347 aa13.1□□□□□ -0.31
VPS25-206ENST00000591584 LTN1O94822 1766 aa13.09□□□□□ -0.31
VPS25-206ENST00000591584 XPCQ01831 940 aaPredicted RBP13.09□□□□□ -0.31
VPS25-206ENST00000591584 C1orf141Q5JVX7 400 aa13.09□□□□□ -0.31
VPS25-206ENST00000591584 TNS3Q68CZ2 1445 aa13.09□□□□□ -0.31
VPS25-206ENST00000591584 DDRGK1Q96HY6 314 aa13.09□□□□□ -0.31
VPS25-206ENST00000591584 SLC4A2P04920 1241 aa13.08□□□□□ -0.32
VPS25-206ENST00000591584 CCT4P50991 539 aaKnown RBP13.08□□□□□ -0.32
VPS25-206ENST00000591584 RPAP2Q8IXW5 612 aaPredicted RBP13.08□□□□□ -0.32
VPS25-206ENST00000591584 CPDO75976 1380 aa13.07□□□□□ -0.32
VPS25-206ENST00000591584 ZBTB7CA1YPR0 619 aa13.07□□□□□ -0.32
VPS25-206ENST00000591584 EIF5BO60841 1220 aaKnown RBP13.07□□□□□ -0.32
VPS25-206ENST00000591584 ALS2Q96Q42 1657 aa13.07□□□□□ -0.32
VPS25-206ENST00000591584 ERBB3P21860 1342 aa13.07□□□□□ -0.32
VPS25-206ENST00000591584 LRRC37A3O60309 1634 aa13.06□□□□□ -0.32
VPS25-206ENST00000591584 TEFQ10587 303 aa13.06□□□□□ -0.32
VPS25-206ENST00000591584 C8orf34Q49A92 452 aa13.06□□□□□ -0.32
VPS25-206ENST00000591584 ZNF530Q6P9A1 599 aaPredicted RBP13.06□□□□□ -0.32
VPS25-206ENST00000591584 ERICH6Q7L0X2 663 aa13.06□□□□□ -0.32
VPS25-206ENST00000591584 SLAIN2Q9P270 581 aa13.06□□□□□ -0.32
VPS25-206ENST00000591584 STRCP1A6NGW2 1772 aa13.05□□□□□ -0.32
VPS25-206ENST00000591584 RNMTO43148 476 aaKnown RBP13.05□□□□□ -0.32
VPS25-206ENST00000591584 NUCB1Q02818 461 aa13.05□□□□□ -0.32
VPS25-206ENST00000591584 USHBP1Q8N6Y0 703 aa13.05□□□□□ -0.32
VPS25-206ENST00000591584 RAPGEF4Q8WZA2 1011 aa13.05□□□□□ -0.32
VPS25-206ENST00000591584 MIS18AQ9NYP9 233 aa13.05□□□□□ -0.32
VPS25-206ENST00000591584 ZBTB47Q9UFB7 747 aaPredicted RBP13.05□□□□□ -0.32
VPS25-206ENST00000591584 SPG7Q9UQ90 795 aa13.05□□□□□ -0.32
VPS25-206ENST00000591584 SOS2Q07890 1332 aaPredicted RBP13.05□□□□□ -0.32
VPS25-206ENST00000591584 PXDNQ92626 1479 aa13.04□□□□□ -0.32
VPS25-206ENST00000591584 HSP90AB1P08238 724 aaKnown RBP13.04□□□□□ -0.32
VPS25-206ENST00000591584 TATP17735 454 aaPredicted RBP13.04□□□□□ -0.32
VPS25-206ENST00000591584 BRINP3Q76B58 766 aa13.04□□□□□ -0.32
VPS25-206ENST00000591584 LRRC59Q96AG4 307 aaKnown RBP13.04□□□□□ -0.32
VPS25-206ENST00000591584 AXIN2Q9Y2T1 843 aa13.04□□□□□ -0.32
VPS25-206ENST00000591584 CAMTA1Q9Y6Y1 1673 aa13.03□□□□□ -0.32
VPS25-206ENST00000591584 BTBD11A6QL63 1104 aa13.03□□□□□ -0.32
VPS25-206ENST00000591584 EIF4A1P60842 406 aaKnown RBP13.03□□□□□ -0.32
VPS25-206ENST00000591584 ZC3H6P61129 1189 aaKnown RBP13.03□□□□□ -0.32
VPS25-206ENST00000591584 KRT24Q2M2I5 525 aa13.03□□□□□ -0.32
VPS25-206ENST00000591584 PPP4R3CPQ6ZMV5 832 aa13.03□□□□□ -0.32
VPS25-206ENST00000591584 MED1Q15648 1581 aaPredicted RBP13.03□□□□□ -0.32
VPS25-206ENST00000591584 HMMRO75330 724 aa13.02□□□□□ -0.33
VPS25-206ENST00000591584 CHD1LQ86WJ1 897 aa13.02□□□□□ -0.33
VPS25-206ENST00000591584 ANKRD44Q8N8A2 993 aa13.02□□□□□ -0.33
VPS25-206ENST00000591584 UPF2Q9HAU5 1272 aaKnown RBP13.02□□□□□ -0.33
VPS25-206ENST00000591584 GNAI3P08754 354 aa13.01□□□□□ -0.33
VPS25-206ENST00000591584 CSB-PGBD3P0DP91 1061 aa13.01□□□□□ -0.33
VPS25-206ENST00000591584 FLIIQ13045 1269 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms