RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 OCSTAMPQ9BR26 566 aa8.69□□□□□ -1.02
SMAD4-208ENST00000589706 MKRN1Q9UHC7 482 aaKnown RBP8.69□□□□□ -1.02
SMAD4-208ENST00000589706 PCDHB9Q9Y5E1 797 aa8.69□□□□□ -1.02
SMAD4-208ENST00000589706 WDR7Q9Y4E6 1490 aa8.69□□□□□ -1.02
SMAD4-208ENST00000589706 ZEB1P37275 1124 aaPredicted RBP8.68□□□□□ -1.02
SMAD4-208ENST00000589706 CCDC27Q2M243 656 aa8.68□□□□□ -1.02
SMAD4-208ENST00000589706 NBPF14Q5TI25 921 aa8.68□□□□□ -1.02
SMAD4-208ENST00000589706 SND1Q7KZF4 910 aaKnown RBP eCLIP8.68□□□□□ -1.02
SMAD4-208ENST00000589706 RNF135Q8IUD6 432 aa8.68□□□□□ -1.02
SMAD4-208ENST00000589706 WBP1LQ9NX94 342 aa8.68□□□□□ -1.02
SMAD4-208ENST00000589706 GNEQ9Y223 722 aaKnown RBP8.68□□□□□ -1.02
SMAD4-208ENST00000589706 ARAP3Q8WWN8 1544 aa8.68□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L15C9J2P7 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L10C9JJH3 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L13C9JLJ4 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L12C9JPN9 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L11C9JVI0 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L21D6R901 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L18D6R9N7 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L22D6RA61 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L17D6RBQ6 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L19D6RCP7 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L20D6RJB6 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 LZTS3O60299 673 aaPredicted RBP8.67□□□□□ -1.02
SMAD4-208ENST00000589706 USP17L24Q0WX57 530 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 CRTC2Q53ET0 693 aaPredicted RBP8.67□□□□□ -1.02
SMAD4-208ENST00000589706 LARP1Q6PKG0 1096 aaKnown RBP8.67□□□□□ -1.02
SMAD4-208ENST00000589706 PHTF2Q8N3S3 785 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 CFAP43Q8NDM7 1665 aa8.67□□□□□ -1.02
SMAD4-208ENST00000589706 RIMS1Q86UR5 1692 aaKnown RBP8.66□□□□□ -1.02
SMAD4-208ENST00000589706 ATP5J2-PTCD1G3V325 749 aa8.66□□□□□ -1.02
SMAD4-208ENST00000589706 COPS2P61201 443 aa8.66□□□□□ -1.02
SMAD4-208ENST00000589706 NCOA4Q13772 614 aa8.66□□□□□ -1.02
SMAD4-208ENST00000589706 PLPP7Q8NBV4 271 aa8.66□□□□□ -1.02
SMAD4-208ENST00000589706 PRDM9Q9NQV7 894 aa8.66□□□□□ -1.02
SMAD4-208ENST00000589706 IGF1RP08069 1367 aa8.65□□□□□ -1.02
SMAD4-208ENST00000589706 RAPGEF3O95398 923 aa8.65□□□□□ -1.02
SMAD4-208ENST00000589706 RASA1P20936 1047 aa8.65□□□□□ -1.02
SMAD4-208ENST00000589706 PTK7Q13308 1070 aa8.65□□□□□ -1.02
SMAD4-208ENST00000589706 ADAM32Q8TC27 787 aa8.65□□□□□ -1.02
SMAD4-208ENST00000589706 ARHGAP9Q9BRR9 750 aa8.65□□□□□ -1.02
SMAD4-208ENST00000589706 MAP7D1Q3KQU3 841 aa8.64□□□□□ -1.03
SMAD4-208ENST00000589706 ZBTB33Q86T24 672 aa8.64□□□□□ -1.03
SMAD4-208ENST00000589706 CCER1Q8TC90 406 aaPredicted RBP8.64□□□□□ -1.03
SMAD4-208ENST00000589706 FAM200AQ8TCP9 573 aa8.64□□□□□ -1.03
SMAD4-208ENST00000589706 CHIC2Q9UKJ5 165 aa8.64□□□□□ -1.03
SMAD4-208ENST00000589706 PHLDB3Q6NSJ2 640 aa8.63□□□□□ -1.03
SMAD4-208ENST00000589706 TXNDC2Q86VQ3 553 aa8.63□□□□□ -1.03
SMAD4-208ENST00000589706 CDCA7Q9BWT1 371 aaPredicted RBP8.63□□□□□ -1.03
SMAD4-208ENST00000589706 ADH1BP00325 375 aa8.62□□□□□ -1.03
SMAD4-208ENST00000589706 RBM25P49756 843 aaKnown RBP8.62□□□□□ -1.03
SMAD4-208ENST00000589706 EML3Q32P44 896 aa8.62□□□□□ -1.03
SMAD4-208ENST00000589706 TRAF7Q6Q0C0 670 aa8.62□□□□□ -1.03
SMAD4-208ENST00000589706 SH3BP5LQ7L8J4 393 aa8.62□□□□□ -1.03
SMAD4-208ENST00000589706 PPARGC1BQ86YN6 1023 aaKnown RBP8.62□□□□□ -1.03
SMAD4-208ENST00000589706 ANKMY2Q8IV38 441 aa8.62□□□□□ -1.03
SMAD4-208ENST00000589706 ZNF428Q96B54 188 aa8.62□□□□□ -1.03
SMAD4-208ENST00000589706 UNC93B1Q9H1C4 597 aa8.62□□□□□ -1.03
SMAD4-208ENST00000589706 DISP1Q96F81 1524 aa8.62□□□□□ -1.03
SMAD4-208ENST00000589706 YEATS2Q9ULM3 1422 aa8.62□□□□□ -1.03
SMAD4-208ENST00000589706 ZPR1O75312 459 aa8.61□□□□□ -1.03
SMAD4-208ENST00000589706 SSFA2P28290 1259 aa8.61□□□□□ -1.03
SMAD4-208ENST00000589706 PTCRAQ6ISU1 281 aaPredicted RBP8.61□□□□□ -1.03
SMAD4-208ENST00000589706 CCDC24Q8N4L8 307 aa8.61□□□□□ -1.03
SMAD4-208ENST00000589706 SLAIN2Q9P270 581 aa8.61□□□□□ -1.03
SMAD4-208ENST00000589706 TLL1O43897 1013 aa8.6□□□□□ -1.03
SMAD4-208ENST00000589706 ARID4AP29374 1257 aaPredicted RBP8.6□□□□□ -1.03
SMAD4-208ENST00000589706 TSGA10IPQ3SY00 556 aa8.6□□□□□ -1.03
SMAD4-208ENST00000589706 THSD4Q6ZMP0 1018 aa8.6□□□□□ -1.03
SMAD4-208ENST00000589706 TRIM50Q86XT4 487 aa8.6□□□□□ -1.03
SMAD4-208ENST00000589706 DZIP3Q86Y13 1208 aaKnown RBP8.6□□□□□ -1.03
SMAD4-208ENST00000589706 FAM9AQ8IZU1 332 aaPredicted RBP8.6□□□□□ -1.03
SMAD4-208ENST00000589706 OGFOD1Q8N543 542 aa8.6□□□□□ -1.03
SMAD4-208ENST00000589706 CLP1Q92989 425 aaKnown RBP8.6□□□□□ -1.03
SMAD4-208ENST00000589706 IQGAP2Q13576 1575 aa8.6□□□□□ -1.03
SMAD4-208ENST00000589706 PHLDB1Q86UU1 1377 aa8.6□□□□□ -1.03
SMAD4-208ENST00000589706 STRCQ7RTU9 1775 aa8.59□□□□□ -1.03
SMAD4-208ENST00000589706 NOD1Q9Y239 953 aa8.59□□□□□ -1.03
SMAD4-208ENST00000589706 AMOTL2Q9Y2J4 779 aa8.59□□□□□ -1.03
SMAD4-208ENST00000589706 ATP1A2P50993 1020 aa8.58□□□□□ -1.04
SMAD4-208ENST00000589706 DPYDQ12882 1025 aa8.58□□□□□ -1.04
SMAD4-208ENST00000589706 NYAP1Q6ZVC0 841 aa8.58□□□□□ -1.04
SMAD4-208ENST00000589706 CARD14Q9BXL6 1004 aa8.58□□□□□ -1.04
SMAD4-208ENST00000589706 DNAAF2Q9NVR5 837 aaKnown RBP8.58□□□□□ -1.04
SMAD4-208ENST00000589706 CLDN10P78369 228 aa8.57□□□□□ -1.04
SMAD4-208ENST00000589706 SWI5Q1ZZU3 235 aa8.57□□□□□ -1.04
SMAD4-208ENST00000589706 SH3RF1Q7Z6J0 888 aa8.57□□□□□ -1.04
SMAD4-208ENST00000589706 ZNF594Q96JF6 807 aaPredicted RBP8.57□□□□□ -1.04
SMAD4-208ENST00000589706 CCDC85AQ96PX6 553 aaPredicted RBP8.57□□□□□ -1.04
SMAD4-208ENST00000589706 MTRQ99707 1265 aa8.57□□□□□ -1.04
SMAD4-208ENST00000589706 SLC6A16Q9GZN6 736 aa8.57□□□□□ -1.04
SMAD4-208ENST00000589706 DOLKQ9UPQ8 538 aa8.57□□□□□ -1.04
SMAD4-208ENST00000589706 LTBP4Q8N2S1 1624 aa8.56□□□□□ -1.04
SMAD4-208ENST00000589706 MAGEB6P1A0A0J9YX57 407 aa8.56□□□□□ -1.04
SMAD4-208ENST00000589706 ATP2B4P23634 1241 aa8.56□□□□□ -1.04
SMAD4-208ENST00000589706 LCE2DQ5TA82 110 aaPredicted RBP8.56□□□□□ -1.04
SMAD4-208ENST00000589706 LARGE2Q8N3Y3 721 aa8.56□□□□□ -1.04
SMAD4-208ENST00000589706 CARMIL1Q5VZK9 1371 aa8.56□□□□□ -1.04
SMAD4-208ENST00000589706 IQSEC2Q5JU85 1478 aa8.56□□□□□ -1.04
SMAD4-208ENST00000589706 POGZQ7Z3K3 1410 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms