RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 CRTC2Q53ET0 693 aaPredicted RBP5.72□□□□□ -1.49
ZNF540-207ENST00000589285 PPP1R12CQ9BZL4 782 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 OSBPL3Q9H4L5 887 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 PRM3Q9NNZ6 103 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 SMARCA2P51531 1590 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 CUX2O14529 1486 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 SNRPBP14678 240 aaKnown RBP5.72□□□□□ -1.49
ZNF540-207ENST00000589285 CTSOP43234 321 aaPredicted RBP5.72□□□□□ -1.49
ZNF540-207ENST00000589285 CFAP70Q5T0N1 1121 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 GPSM3Q9Y4H4 160 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 USP17L3A6NCW0 530 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 USP17L4A6NCW7 530 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 ESPNB1AK53 854 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 WASHC4Q2M389 1173 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 USP17L2Q6R6M4 530 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 USP17L1Q7RTZ2 530 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 DOLKQ9UPQ8 538 aa5.72□□□□□ -1.49
ZNF540-207ENST00000589285 ZC3H4Q9UPT8 1303 aaKnown RBP5.71□□□□□ -1.49
ZNF540-207ENST00000589285 NRG2O14511 850 aaPredicted RBP5.71□□□□□ -1.5
ZNF540-207ENST00000589285 MAFBQ9Y5Q3 323 aaPredicted RBP5.71□□□□□ -1.5
ZNF540-207ENST00000589285 USP3Q9Y6I4 520 aa5.71□□□□□ -1.5
ZNF540-207ENST00000589285 HMGXB3Q12766 1538 aa5.71□□□□□ -1.5
ZNF540-207ENST00000589285 KLRG1Q96E93 195 aa5.7□□□□□ -1.5
ZNF540-207ENST00000589285 SERTAD1Q9UHV2 236 aa5.7□□□□□ -1.5
ZNF540-207ENST00000589285 PSME1Q06323 249 aa5.7□□□□□ -1.5
ZNF540-207ENST00000589285 PNMA1Q8ND90 353 aa5.7□□□□□ -1.5
ZNF540-207ENST00000589285 BMP2P12643 396 aa5.7□□□□□ -1.5
ZNF540-207ENST00000589285 NR5A1Q13285 461 aa5.7□□□□□ -1.5
ZNF540-207ENST00000589285 RHOQP17081 205 aa5.69□□□□□ -1.5
ZNF540-207ENST00000589285 PRICKLE2Q7Z3G6 844 aa5.69□□□□□ -1.5
ZNF540-207ENST00000589285 MKRN1Q9UHC7 482 aaKnown RBP5.69□□□□□ -1.5
ZNF540-207ENST00000589285 MAP4K5Q9Y4K4 846 aa5.69□□□□□ -1.5
ZNF540-207ENST00000589285 PARP3Q9Y6F1 533 aa5.69□□□□□ -1.5
ZNF540-207ENST00000589285 MEN1O00255 615 aa5.69□□□□□ -1.5
ZNF540-207ENST00000589285 LINC00528Q8N1L1 170 aa5.69□□□□□ -1.5
ZNF540-207ENST00000589285 SOCS7O14512 581 aa5.68□□□□□ -1.5
ZNF540-207ENST00000589285 TPCN2Q8NHX9 752 aa5.68□□□□□ -1.5
ZNF540-207ENST00000589285 STK32AQ8WU08 396 aa5.68□□□□□ -1.5
ZNF540-207ENST00000589285 ATP13A2Q9NQ11 1180 aa5.68□□□□□ -1.5
ZNF540-207ENST00000589285 SH3PXD2AQ5TCZ1 1133 aa5.68□□□□□ -1.5
ZNF540-207ENST00000589285 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.68□□□□□ -1.5
ZNF540-207ENST00000589285 ETNK1Q9HBU6 452 aa5.68□□□□□ -1.5
ZNF540-207ENST00000589285 SFI1A8K8P3 1242 aa5.68□□□□□ -1.5
ZNF540-207ENST00000589285 MRPL14Q6P1L8 145 aaKnown RBP5.68□□□□□ -1.5
ZNF540-207ENST00000589285 MEIOBQ8N635 442 aa5.68□□□□□ -1.5
ZNF540-207ENST00000589285 TSEN2Q8NCE0 465 aaKnown RBP5.68□□□□□ -1.5
ZNF540-207ENST00000589285 OGFOD1Q8N543 542 aa5.67□□□□□ -1.5
ZNF540-207ENST00000589285 DNMT3LQ9UJW3 386 aa5.67□□□□□ -1.5
ZNF540-207ENST00000589285 A0A1W2PRU2 124 aa5.67□□□□□ -1.5
ZNF540-207ENST00000589285 PHKA2P46019 1235 aa5.67□□□□□ -1.5
ZNF540-207ENST00000589285 ERVK-9P63128 1117 aa5.67□□□□□ -1.5
ZNF540-207ENST00000589285 CAPN12Q6ZSI9 719 aa5.67□□□□□ -1.5
ZNF540-207ENST00000589285 EMILIN1Q9Y6C2 1016 aa5.67□□□□□ -1.5
ZNF540-207ENST00000589285 ATP9BO43861 1147 aa5.66□□□□□ -1.5
ZNF540-207ENST00000589285 RASA1P20936 1047 aa5.66□□□□□ -1.5
ZNF540-207ENST00000589285 SCNN1DP51172 638 aa5.66□□□□□ -1.5
ZNF540-207ENST00000589285 GTF2IP78347 998 aa5.66□□□□□ -1.5
ZNF540-207ENST00000589285 PCDHGA11Q9Y5H2 935 aa5.66□□□□□ -1.5
ZNF540-207ENST00000589285 AVPP01185 164 aa5.66□□□□□ -1.5
ZNF540-207ENST00000589285 KANK4Q5T7N3 995 aaPredicted RBP5.66□□□□□ -1.5
ZNF540-207ENST00000589285 CNKSR1Q969H4 720 aa5.66□□□□□ -1.5
ZNF540-207ENST00000589285 IL2RAP01589 272 aa5.65□□□□□ -1.5
ZNF540-207ENST00000589285 POLMQ9NP87 494 aaPredicted RBP5.65□□□□□ -1.5
ZNF540-207ENST00000589285 TMEM229AB2RXF0 380 aa5.65□□□□□ -1.5
ZNF540-207ENST00000589285 TNS4Q8IZW8 715 aa5.65□□□□□ -1.5
ZNF540-207ENST00000589285 C11orf95C9JLR9 678 aaPredicted RBP5.65□□□□□ -1.51
ZNF540-207ENST00000589285 LAPTM4AQ15012 233 aa5.65□□□□□ -1.51
ZNF540-207ENST00000589285 CC2D2BQ6DHV5 1058 aa5.65□□□□□ -1.51
ZNF540-207ENST00000589285 WWC1Q8IX03 1113 aa5.65□□□□□ -1.51
ZNF540-207ENST00000589285 ZBTB7BO15156 539 aaPredicted RBP5.64□□□□□ -1.51
ZNF540-207ENST00000589285 Q6ZVU0 165 aa5.64□□□□□ -1.51
ZNF540-207ENST00000589285 CCDC97Q96F63 343 aaPredicted RBP5.64□□□□□ -1.51
ZNF540-207ENST00000589285 NCAPD3P42695 1498 aa5.64□□□□□ -1.51
ZNF540-207ENST00000589285 ATP5J2-PTCD1G3V325 749 aa5.64□□□□□ -1.51
ZNF540-207ENST00000589285 ZMIZ1Q9ULJ6 1067 aa5.64□□□□□ -1.51
ZNF540-207ENST00000589285 CECR2Q9BXF3 1484 aa5.64□□□□□ -1.51
ZNF540-207ENST00000589285 ADH1AP07327 375 aa5.63□□□□□ -1.51
ZNF540-207ENST00000589285 FOXD4L5Q5VV16 416 aaPredicted RBP5.63□□□□□ -1.51
ZNF540-207ENST00000589285 DPYDQ12882 1025 aa5.63□□□□□ -1.51
ZNF540-207ENST00000589285 CHMP7Q8WUX9 453 aaPredicted RBP5.63□□□□□ -1.51
ZNF540-207ENST00000589285 SLAIN2Q9P270 581 aa5.63□□□□□ -1.51
ZNF540-207ENST00000589285 CHIC2Q9UKJ5 165 aa5.63□□□□□ -1.51
ZNF540-207ENST00000589285 DGAT1O75907 488 aa5.63□□□□□ -1.51
ZNF540-207ENST00000589285 CCDC102BQ68D86 513 aa5.63□□□□□ -1.51
ZNF540-207ENST00000589285 SRPK2P78362 688 aaKnown RBP5.62□□□□□ -1.51
ZNF540-207ENST00000589285 PGPEP1Q9NXJ5 209 aa5.62□□□□□ -1.51
ZNF540-207ENST00000589285 MAN1A2O60476 641 aa5.62□□□□□ -1.51
ZNF540-207ENST00000589285 GDF10P55107 478 aa5.62□□□□□ -1.51
ZNF540-207ENST00000589285 POU4F2Q12837 409 aa5.62□□□□□ -1.51
ZNF540-207ENST00000589285 MPNDQ8N594 471 aa5.62□□□□□ -1.51
ZNF540-207ENST00000589285 GPAMQ9HCL2 828 aa5.62□□□□□ -1.51
ZNF540-207ENST00000589285 EML3Q32P44 896 aa5.61□□□□□ -1.51
ZNF540-207ENST00000589285 ZNF787Q6DD87 383 aa5.61□□□□□ -1.51
ZNF540-207ENST00000589285 SEPT12Q8IYM1 358 aa5.61□□□□□ -1.51
ZNF540-207ENST00000589285 TSPAN10Q9H1Z9 355 aaPredicted RBP5.61□□□□□ -1.51
ZNF540-207ENST00000589285 TTLL8A6PVC2 850 aa5.61□□□□□ -1.51
ZNF540-207ENST00000589285 DHX9Q08211 1270 aaKnown RBP5.61□□□□□ -1.51
ZNF540-207ENST00000589285 USP4Q13107 963 aa5.61□□□□□ -1.51
ZNF540-207ENST00000589285 PRIMPOLQ96LW4 560 aa5.61□□□□□ -1.51
ZNF540-207ENST00000589285 MKNK1Q9BUB5 465 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms