RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 DDB1Q16531 1140 aa6.13□□□□□ -1.43
LIG3-211ENST00000588713 PRPF38BQ5VTL8 546 aaKnown RBP6.13□□□□□ -1.43
LIG3-211ENST00000588713 WAPLQ7Z5K2 1190 aa6.13□□□□□ -1.43
LIG3-211ENST00000588713 SLAIN1Q8ND83 568 aa6.13□□□□□ -1.43
LIG3-211ENST00000588713 PCDHB8Q9UN66 801 aa6.13□□□□□ -1.43
LIG3-211ENST00000588713 PNPLA7Q6ZV29 1317 aa6.13□□□□□ -1.43
LIG3-211ENST00000588713 IGSF1Q8N6C5 1336 aa6.13□□□□□ -1.43
LIG3-211ENST00000588713 IQGAP3Q86VI3 1631 aa6.13□□□□□ -1.43
LIG3-211ENST00000588713 SBF2Q86WG5 1849 aa6.13□□□□□ -1.43
LIG3-211ENST00000588713 PAPPAQ13219 1627 aa6.12□□□□□ -1.43
LIG3-211ENST00000588713 MYOM3Q5VTT5 1437 aa6.12□□□□□ -1.43
LIG3-211ENST00000588713 RRAGCQ9HB90 399 aa6.12□□□□□ -1.43
LIG3-211ENST00000588713 TFCP2L1Q9NZI6 479 aa6.12□□□□□ -1.43
LIG3-211ENST00000588713 STK26Q9P289 416 aa6.12□□□□□ -1.43
LIG3-211ENST00000588713 PARP4Q9UKK3 1724 aaKnown RBP6.11□□□□□ -1.43
LIG3-211ENST00000588713 PHRF1Q9P1Y6 1649 aaKnown RBP6.11□□□□□ -1.43
LIG3-211ENST00000588713 KCPQ6ZWJ8 1503 aa6.11□□□□□ -1.43
LIG3-211ENST00000588713 NRXN1Q9ULB1 1477 aa6.11□□□□□ -1.43
LIG3-211ENST00000588713 VASPP50552 380 aaPredicted RBP6.11□□□□□ -1.43
LIG3-211ENST00000588713 NEUROD1Q13562 356 aa6.11□□□□□ -1.43
LIG3-211ENST00000588713 THRAP3Q9Y2W1 955 aaKnown RBP6.11□□□□□ -1.43
LIG3-211ENST00000588713 CD2APQ9Y5K6 639 aa6.11□□□□□ -1.43
LIG3-211ENST00000588713 FMN2Q9NZ56 1722 aa6.11□□□□□ -1.43
LIG3-211ENST00000588713 PLEKHH1Q9ULM0 1364 aa6.1□□□□□ -1.43
LIG3-211ENST00000588713 CLSPNQ9HAW4 1339 aa6.1□□□□□ -1.43
LIG3-211ENST00000588713 HSPA8P11142 646 aaKnown RBP6.1□□□□□ -1.43
LIG3-211ENST00000588713 IRX5P78411 483 aaPredicted RBP6.1□□□□□ -1.43
LIG3-211ENST00000588713 GSE1Q14687 1217 aa6.1□□□□□ -1.43
LIG3-211ENST00000588713 MARCH10Q8NA82 808 aaPredicted RBP6.1□□□□□ -1.43
LIG3-211ENST00000588713 ACSBG1Q96GR2 724 aa6.1□□□□□ -1.43
LIG3-211ENST00000588713 HIRIP3Q9BW71 556 aaPredicted RBP6.1□□□□□ -1.43
LIG3-211ENST00000588713 OCEL1Q9H607 264 aa6.1□□□□□ -1.43
LIG3-211ENST00000588713 LRRC37A3O60309 1634 aa6.1□□□□□ -1.43
LIG3-211ENST00000588713 ANKRD30AQ9BXX3 1397 aa6.09□□□□□ -1.43
LIG3-211ENST00000588713 KDM2BQ8NHM5 1336 aa6.09□□□□□ -1.43
LIG3-211ENST00000588713 TNRC18O15417 2968 aaPredicted RBP6.09□□□□□ -1.43
LIG3-211ENST00000588713 LRRC4BQ9NT99 713 aa6.09□□□□□ -1.43
LIG3-211ENST00000588713 GPRASP1Q5JY77 1395 aa6.08□□□□□ -1.44
LIG3-211ENST00000588713 E9PCH4 1651 aa6.08□□□□□ -1.44
LIG3-211ENST00000588713 GOLGA2Q08379 1002 aa6.08□□□□□ -1.44
LIG3-211ENST00000588713 NUTM2GQ5VZR2 741 aa6.08□□□□□ -1.44
LIG3-211ENST00000588713 ARHGAP27Q6ZUM4 889 aa6.08□□□□□ -1.44
LIG3-211ENST00000588713 GTF3C3Q9Y5Q9 886 aa6.08□□□□□ -1.44
LIG3-211ENST00000588713 COL24A1Q17RW2 1714 aa6.08□□□□□ -1.44
LIG3-211ENST00000588713 ZBTB7CA1YPR0 619 aa6.07□□□□□ -1.44
LIG3-211ENST00000588713 KCNQ4P56696 695 aa6.07□□□□□ -1.44
LIG3-211ENST00000588713 C9orf131Q5VYM1 1079 aa6.07□□□□□ -1.44
LIG3-211ENST00000588713 ZNF467Q7Z7K2 595 aaPredicted RBP6.07□□□□□ -1.44
LIG3-211ENST00000588713 RGPD8O14715 1765 aaPredicted RBP6.07□□□□□ -1.44
LIG3-211ENST00000588713 TRPM3Q9HCF6 1732 aaPredicted RBP6.07□□□□□ -1.44
LIG3-211ENST00000588713 ALS2Q96Q42 1657 aa6.07□□□□□ -1.44
LIG3-211ENST00000588713 DAPK1P53355 1430 aa6.07□□□□□ -1.44
LIG3-211ENST00000588713 CICQ96RK0 1608 aaPredicted RBP6.07□□□□□ -1.44
LIG3-211ENST00000588713 BRD4O60885 1362 aaPredicted RBP6.06□□□□□ -1.44
LIG3-211ENST00000588713 CRYBG1Q9Y4K1 1723 aa6.06□□□□□ -1.44
LIG3-211ENST00000588713 SOX10P56693 466 aa6.06□□□□□ -1.44
LIG3-211ENST00000588713 DIEXFQ68CQ4 756 aaKnown RBP6.06□□□□□ -1.44
LIG3-211ENST00000588713 MPNDQ8N594 471 aa6.06□□□□□ -1.44
LIG3-211ENST00000588713 WBP1LQ9NX94 342 aa6.06□□□□□ -1.44
LIG3-211ENST00000588713 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.06□□□□□ -1.44
LIG3-211ENST00000588713 BCS1LQ9Y276 419 aa6.06□□□□□ -1.44
LIG3-211ENST00000588713 PDE4DIPQ5VU43 2346 aa6.06□□□□□ -1.44
LIG3-211ENST00000588713 C10orf71Q711Q0 1435 aa6.06□□□□□ -1.44
LIG3-211ENST00000588713 CLTCL1P53675 1640 aa6.06□□□□□ -1.44
LIG3-211ENST00000588713 CNTNAP1P78357 1384 aa6.06□□□□□ -1.44
LIG3-211ENST00000588713 PLEKHG2Q9H7P9 1386 aa6.06□□□□□ -1.44
LIG3-211ENST00000588713 PXDNLA1KZ92 1463 aa6.05□□□□□ -1.44
LIG3-211ENST00000588713 ST18O60284 1047 aa6.05□□□□□ -1.44
LIG3-211ENST00000588713 MKRN3Q13064 507 aaKnown RBP6.05□□□□□ -1.44
LIG3-211ENST00000588713 TOM1L2Q6ZVM7 507 aa6.05□□□□□ -1.44
LIG3-211ENST00000588713 COL23A1Q86Y22 540 aaPredicted RBP6.05□□□□□ -1.44
LIG3-211ENST00000588713 CDAN1Q8IWY9 1227 aa6.05□□□□□ -1.44
LIG3-211ENST00000588713 MCOLN1Q9GZU1 580 aa6.05□□□□□ -1.44
LIG3-211ENST00000588713 BCL9O00512 1426 aa6.05□□□□□ -1.44
LIG3-211ENST00000588713 CRB1P82279 1406 aa6.05□□□□□ -1.44
LIG3-211ENST00000588713 COL5A2P05997 1499 aaPredicted RBP6.04□□□□□ -1.44
LIG3-211ENST00000588713 VGFO15240 615 aaPredicted RBP6.04□□□□□ -1.44
LIG3-211ENST00000588713 VEGFBP49765 207 aa6.04□□□□□ -1.44
LIG3-211ENST00000588713 SAFB2Q14151 953 aaKnown RBP eCLIP6.04□□□□□ -1.44
LIG3-211ENST00000588713 HABP4Q5JVS0 413 aaKnown RBP6.04□□□□□ -1.44
LIG3-211ENST00000588713 SLC17A8Q8NDX2 589 aa6.04□□□□□ -1.44
LIG3-211ENST00000588713 CCER1Q8TC90 406 aaPredicted RBP6.04□□□□□ -1.44
LIG3-211ENST00000588713 GCC1Q96CN9 775 aa6.04□□□□□ -1.44
LIG3-211ENST00000588713 ANKRD50Q9ULJ7 1429 aa6.04□□□□□ -1.44
LIG3-211ENST00000588713 AKAP12Q02952 1782 aa6.03□□□□□ -1.44
LIG3-211ENST00000588713 IFT172Q9UG01 1749 aa6.03□□□□□ -1.44
LIG3-211ENST00000588713 CHRM1P11229 460 aaPredicted RBP6.03□□□□□ -1.44
LIG3-211ENST00000588713 PSEN1P49768 467 aa6.03□□□□□ -1.44
LIG3-211ENST00000588713 NGDNQ8NEJ9 315 aaKnown RBP6.03□□□□□ -1.44
LIG3-211ENST00000588713 RNF181Q9P0P0 153 aa6.03□□□□□ -1.44
LIG3-211ENST00000588713 CIZ1Q9ULV3 898 aaPredicted RBP6.03□□□□□ -1.44
LIG3-211ENST00000588713 TUBGCP6Q96RT7 1819 aa6.03□□□□□ -1.44
LIG3-211ENST00000588713 ANKRD30BQ9BXX2 1392 aa6.03□□□□□ -1.44
LIG3-211ENST00000588713 QSER1Q2KHR3 1735 aa6.02□□□□□ -1.45
LIG3-211ENST00000588713 PITPNM2Q9BZ72 1349 aa6.02□□□□□ -1.45
LIG3-211ENST00000588713 USP6P35125 1406 aa6.02□□□□□ -1.45
LIG3-211ENST00000588713 NHSQ6T4R5 1651 aa6.02□□□□□ -1.45
LIG3-211ENST00000588713 TNRC6CQ9HCJ0 1690 aaKnown RBP6.02□□□□□ -1.45
LIG3-211ENST00000588713 SNPHO15079 494 aa6.02□□□□□ -1.45
LIG3-211ENST00000588713 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms