RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 ICMTO60725 284 aa12.06□□□□□ -0.48
VMP1-208ENST00000588617 CCDC24Q8N4L8 307 aa12.06□□□□□ -0.48
VMP1-208ENST00000588617 HINFPQ9BQA5 517 aa12.06□□□□□ -0.48
VMP1-208ENST00000588617 UNC93B1Q9H1C4 597 aa12.06□□□□□ -0.48
VMP1-208ENST00000588617 LGR5O75473 907 aa12.05□□□□□ -0.48
VMP1-208ENST00000588617 TCF3P15923 654 aa12.05□□□□□ -0.48
VMP1-208ENST00000588617 RNF20Q5VTR2 975 aa12.05□□□□□ -0.48
VMP1-208ENST00000588617 MAPK1P28482 360 aa12.04□□□□□ -0.48
VMP1-208ENST00000588617 GTF3C2Q8WUA4 911 aaPredicted RBP12.03□□□□□ -0.48
VMP1-208ENST00000588617 PCDHGA11Q9Y5H2 935 aa12.03□□□□□ -0.48
VMP1-208ENST00000588617 COPS2P61201 443 aa12.02□□□□□ -0.49
VMP1-208ENST00000588617 AGERQ15109 404 aa12.02□□□□□ -0.49
VMP1-208ENST00000588617 PTCRAQ6ISU1 281 aaPredicted RBP12.02□□□□□ -0.49
VMP1-208ENST00000588617 C21orf2O43822 256 aa12.01□□□□□ -0.49
VMP1-208ENST00000588617 USP4Q13107 963 aa12.01□□□□□ -0.49
VMP1-208ENST00000588617 MKNK1Q9BUB5 465 aa12.01□□□□□ -0.49
VMP1-208ENST00000588617 SEPT3Q9UH03 358 aa12.01□□□□□ -0.49
VMP1-208ENST00000588617 SH3RF1Q7Z6J0 888 aa12□□□□□ -0.49
VMP1-208ENST00000588617 DCTN4Q9UJW0 460 aa12□□□□□ -0.49
VMP1-208ENST00000588617 FKBP4Q02790 459 aaKnown RBP eCLIP11.99□□□□□ -0.49
VMP1-208ENST00000588617 ERFEQ4G0M1 354 aa11.99□□□□□ -0.49
VMP1-208ENST00000588617 ZSCAN29Q8IWY8 852 aaPredicted RBP11.99□□□□□ -0.49
VMP1-208ENST00000588617 ASB16Q96NS5 453 aa11.99□□□□□ -0.49
VMP1-208ENST00000588617 DNMT3AQ9Y6K1 912 aaPredicted RBP11.99□□□□□ -0.49
VMP1-208ENST00000588617 TAGLNQ01995 201 aaKnown RBP11.98□□□□□ -0.49
VMP1-208ENST00000588617 FBXO33Q7Z6M2 555 aa11.98□□□□□ -0.49
VMP1-208ENST00000588617 BPHLQ86WA6 291 aaPredicted RBP11.98□□□□□ -0.49
VMP1-208ENST00000588617 SLC10A4Q96EP9 437 aa11.98□□□□□ -0.49
VMP1-208ENST00000588617 PCDHB11Q9Y5F2 797 aa11.98□□□□□ -0.49
VMP1-208ENST00000588617 VAMP1P23763 118 aa11.97□□□□□ -0.49
VMP1-208ENST00000588617 SF3B2Q13435 895 aaKnown RBP11.97□□□□□ -0.49
VMP1-208ENST00000588617 BAP1Q92560 729 aa11.97□□□□□ -0.49
VMP1-208ENST00000588617 WBP1LQ9NX94 342 aa11.97□□□□□ -0.49
VMP1-208ENST00000588617 ADH1BP00325 375 aa11.95□□□□□ -0.5
VMP1-208ENST00000588617 WEE1P30291 646 aa11.95□□□□□ -0.5
VMP1-208ENST00000588617 MTMR3Q13615 1198 aa11.95□□□□□ -0.5
VMP1-208ENST00000588617 ECM1Q16610 540 aa11.95□□□□□ -0.5
VMP1-208ENST00000588617 LINC01559Q495D7 138 aa11.95□□□□□ -0.5
VMP1-208ENST00000588617 TSEN2Q8NCE0 465 aaKnown RBP11.95□□□□□ -0.5
VMP1-208ENST00000588617 FOXJ1Q92949 421 aa11.95□□□□□ -0.5
VMP1-208ENST00000588617 BCL11AQ9H165 835 aa11.95□□□□□ -0.5
VMP1-208ENST00000588617 TLL1O43897 1013 aa11.94□□□□□ -0.5
VMP1-208ENST00000588617 PTCD1O75127 700 aaKnown RBP11.94□□□□□ -0.5
VMP1-208ENST00000588617 FKBP5Q13451 457 aaPredicted RBP11.94□□□□□ -0.5
VMP1-208ENST00000588617 NBPF20Q3BBV1 942 aa11.94□□□□□ -0.5
VMP1-208ENST00000588617 CAPN12Q6ZSI9 719 aa11.94□□□□□ -0.5
VMP1-208ENST00000588617 ARHGAP4P98171 946 aa11.93□□□□□ -0.5
VMP1-208ENST00000588617 IFFO2Q5TF58 517 aa11.93□□□□□ -0.5
VMP1-208ENST00000588617 ESPNB1AK53 854 aa11.91□□□□□ -0.5
VMP1-208ENST00000588617 M0R2N6 131 aa11.91□□□□□ -0.5
VMP1-208ENST00000588617 ZPR1O75312 459 aa11.91□□□□□ -0.5
VMP1-208ENST00000588617 NAA30Q147X3 362 aaPredicted RBP11.91□□□□□ -0.5
VMP1-208ENST00000588617 EAPPQ56P03 285 aaPredicted RBP11.91□□□□□ -0.5
VMP1-208ENST00000588617 C4orf48Q5BLP8 95 aa11.91□□□□□ -0.5
VMP1-208ENST00000588617 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.91□□□□□ -0.5
VMP1-208ENST00000588617 PURBQ96QR8 312 aaKnown RBP11.91□□□□□ -0.5
VMP1-208ENST00000588617 MYCP01106 439 aaPredicted RBP11.9□□□□□ -0.5
VMP1-208ENST00000588617 COL19A1Q14993 1142 aa11.9□□□□□ -0.5
VMP1-208ENST00000588617 NYAP1Q6ZVC0 841 aa11.9□□□□□ -0.5
VMP1-208ENST00000588617 CCDC125Q86Z20 511 aa11.9□□□□□ -0.5
VMP1-208ENST00000588617 SEPT12Q8IYM1 358 aa11.9□□□□□ -0.5
VMP1-208ENST00000588617 ZNF511Q8NB15 262 aa11.9□□□□□ -0.5
VMP1-208ENST00000588617 GAS2L2Q8NHY3 880 aa11.9□□□□□ -0.5
VMP1-208ENST00000588617 RAB15P59190 212 aa11.89□□□□□ -0.51
VMP1-208ENST00000588617 RGL4Q8IZJ4 473 aa11.89□□□□□ -0.51
VMP1-208ENST00000588617 C8orf37Q96NL8 207 aa11.89□□□□□ -0.51
VMP1-208ENST00000588617 SLC6A16Q9GZN6 736 aa11.89□□□□□ -0.51
VMP1-208ENST00000588617 ITGBL1O95965 494 aaPredicted RBP11.88□□□□□ -0.51
VMP1-208ENST00000588617 RECKO95980 971 aa11.88□□□□□ -0.51
VMP1-208ENST00000588617 TSNAXIP1Q2TAA8 658 aa11.88□□□□□ -0.51
VMP1-208ENST00000588617 CDV3Q9UKY7 258 aaKnown RBP11.88□□□□□ -0.51
VMP1-208ENST00000588617 HELQQ8TDG4 1101 aa11.87□□□□□ -0.51
VMP1-208ENST00000588617 DRC1Q96MC2 740 aa11.87□□□□□ -0.51
VMP1-208ENST00000588617 ZNF358Q9NW07 568 aa11.87□□□□□ -0.51
VMP1-208ENST00000588617 FAM13AO94988 1023 aa11.86□□□□□ -0.51
VMP1-208ENST00000588617 COL26A1Q96A83 441 aa11.86□□□□□ -0.51
VMP1-208ENST00000588617 C1QTNF2Q9BXJ5 285 aa11.86□□□□□ -0.51
VMP1-208ENST00000588617 HMGB1P09429 215 aaKnown RBP11.85□□□□□ -0.51
VMP1-208ENST00000588617 IGFBP4P22692 258 aa11.85□□□□□ -0.51
VMP1-208ENST00000588617 ZC3H6P61129 1189 aaKnown RBP11.85□□□□□ -0.51
VMP1-208ENST00000588617 SREK1Q8WXA9 508 aaKnown RBP11.85□□□□□ -0.51
VMP1-208ENST00000588617 ESF1Q9H501 851 aaKnown RBP11.85□□□□□ -0.51
VMP1-208ENST00000588617 A0A0G2JS52 829 aa11.84□□□□□ -0.51
VMP1-208ENST00000588617 FOXO3O43524 673 aa11.83□□□□□ -0.52
VMP1-208ENST00000588617 TRMT44Q8IYL2 757 aaKnown RBP11.83□□□□□ -0.52
VMP1-208ENST00000588617 SCG3Q8WXD2 468 aaKnown RBP11.83□□□□□ -0.52
VMP1-208ENST00000588617 VTI1AQ96AJ9 217 aa11.83□□□□□ -0.52
VMP1-208ENST00000588617 KCTD15Q96SI1 283 aaPredicted RBP11.83□□□□□ -0.52
VMP1-208ENST00000588617 MTRQ99707 1265 aa11.83□□□□□ -0.52
VMP1-208ENST00000588617 P4HBP07237 508 aaKnown RBP11.81□□□□□ -0.52
VMP1-208ENST00000588617 NPR3P17342 541 aa11.81□□□□□ -0.52
VMP1-208ENST00000588617 SCTRP47872 440 aa11.81□□□□□ -0.52
VMP1-208ENST00000588617 TMC7Q7Z402 723 aa11.81□□□□□ -0.52
VMP1-208ENST00000588617 RBCK1Q9BYM8 510 aa11.81□□□□□ -0.52
VMP1-208ENST00000588617 FCF1Q9Y324 198 aaKnown RBP11.81□□□□□ -0.52
VMP1-208ENST00000588617 TMEM229AB2RXF0 380 aa11.8□□□□□ -0.52
VMP1-208ENST00000588617 NDUFB5O43674 189 aa11.8□□□□□ -0.52
VMP1-208ENST00000588617 MPSTP25325 297 aa11.8□□□□□ -0.52
VMP1-208ENST00000588617 SH3BP2P78314 561 aa11.8□□□□□ -0.52
VMP1-208ENST00000588617 NAALADL2Q58DX5 795 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms