RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 TOM1L2Q6ZVM7 507 aa13.6□□□□□ -0.23
LIG3-203ENST00000585370 TRMT2AQ8IZ69 625 aaKnown RBP13.6□□□□□ -0.23
LIG3-203ENST00000585370 PELP1Q8IZL8 1130 aaKnown RBP13.6□□□□□ -0.23
LIG3-203ENST00000585370 RCAN3Q9UKA8 241 aa13.6□□□□□ -0.23
LIG3-203ENST00000585370 COL18A1P39060 1754 aa13.6□□□□□ -0.23
LIG3-203ENST00000585370 PARP4Q9UKK3 1724 aaKnown RBP13.59□□□□□ -0.23
LIG3-203ENST00000585370 MAPK8IP3Q9UPT6 1336 aa13.59□□□□□ -0.23
LIG3-203ENST00000585370 PPM1GO15355 546 aaPredicted RBP13.58□□□□□ -0.24
LIG3-203ENST00000585370 SOX12O15370 315 aa13.58□□□□□ -0.24
LIG3-203ENST00000585370 DDB1Q16531 1140 aa13.58□□□□□ -0.24
LIG3-203ENST00000585370 WWC1Q8IX03 1113 aa13.58□□□□□ -0.24
LIG3-203ENST00000585370 KCNH5Q8NCM2 988 aa13.58□□□□□ -0.24
LIG3-203ENST00000585370 CDCA7LQ96GN5 454 aa13.58□□□□□ -0.24
LIG3-203ENST00000585370 PLEKHF1Q96S99 279 aa13.58□□□□□ -0.24
LIG3-203ENST00000585370 WDR17Q8IZU2 1322 aa13.58□□□□□ -0.24
LIG3-203ENST00000585370 KIF24Q5T7B8 1368 aa13.58□□□□□ -0.24
LIG3-203ENST00000585370 IL13P35225 146 aa13.57□□□□□ -0.24
LIG3-203ENST00000585370 DUSP27Q5VZP5 1158 aa13.57□□□□□ -0.24
LIG3-203ENST00000585370 PTF1AQ7RTS3 328 aa13.57□□□□□ -0.24
LIG3-203ENST00000585370 EMILIN1Q9Y6C2 1016 aa13.57□□□□□ -0.24
LIG3-203ENST00000585370 MAP2P11137 1827 aaKnown RBP13.57□□□□□ -0.24
LIG3-203ENST00000585370 SENP3-EIF4A1A0A087X0R7 540 aa13.56□□□□□ -0.24
LIG3-203ENST00000585370 NBPF14Q5TI25 921 aa13.56□□□□□ -0.24
LIG3-203ENST00000585370 MARCH10Q8NA82 808 aaPredicted RBP13.56□□□□□ -0.24
LIG3-203ENST00000585370 CARD10Q9BWT7 1032 aa13.56□□□□□ -0.24
LIG3-203ENST00000585370 RREB1Q92766 1687 aa13.56□□□□□ -0.24
LIG3-203ENST00000585370 PEAK1Q9H792 1746 aa13.56□□□□□ -0.24
LIG3-203ENST00000585370 OVOS2A0A0G2JMS6 1433 aa13.56□□□□□ -0.24
LIG3-203ENST00000585370 NUP188Q5SRE5 1749 aa13.54□□□□□ -0.24
LIG3-203ENST00000585370 RGPD5Q99666 1765 aa13.54□□□□□ -0.24
LIG3-203ENST00000585370 PLSCR1O15162 318 aa13.54□□□□□ -0.24
LIG3-203ENST00000585370 CSB-PGBD3P0DP91 1061 aa13.54□□□□□ -0.24
LIG3-203ENST00000585370 TMPOP42166 694 aaKnown RBP13.54□□□□□ -0.24
LIG3-203ENST00000585370 RRS1Q15050 365 aaKnown RBP13.54□□□□□ -0.24
LIG3-203ENST00000585370 CDCA7Q9BWT1 371 aaPredicted RBP13.54□□□□□ -0.24
LIG3-203ENST00000585370 BCL11BQ9C0K0 894 aaPredicted RBP13.54□□□□□ -0.24
LIG3-203ENST00000585370 RSPH6AQ9H0K4 717 aa13.54□□□□□ -0.24
LIG3-203ENST00000585370 PPP4R2Q9NY27 417 aa13.54□□□□□ -0.24
LIG3-203ENST00000585370 NFAT5O94916 1531 aa13.54□□□□□ -0.24
LIG3-203ENST00000585370 UTRNP46939 3433 aa13.54□□□□□ -0.24
LIG3-203ENST00000585370 LRRC37A3O60309 1634 aa13.53□□□□□ -0.24
LIG3-203ENST00000585370 FBLN1P23142 703 aa13.53□□□□□ -0.24
LIG3-203ENST00000585370 PROM2Q8N271 834 aa13.53□□□□□ -0.24
LIG3-203ENST00000585370 MYH16Q9H6N6 1097 aa13.53□□□□□ -0.24
LIG3-203ENST00000585370 IL16Q14005 1332 aa13.53□□□□□ -0.24
LIG3-203ENST00000585370 SBF2Q86WG5 1849 aa13.53□□□□□ -0.24
LIG3-203ENST00000585370 RRP1P56182 461 aaKnown RBP13.52□□□□□ -0.25
LIG3-203ENST00000585370 CALD1Q05682 793 aaKnown RBP13.52□□□□□ -0.25
LIG3-203ENST00000585370 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.52□□□□□ -0.25
LIG3-203ENST00000585370 USP54Q70EL1 1684 aa13.51□□□□□ -0.25
LIG3-203ENST00000585370 BCL9O00512 1426 aa13.51□□□□□ -0.25
LIG3-203ENST00000585370 FLT4P35916 1363 aa13.51□□□□□ -0.25
LIG3-203ENST00000585370 EXOC5O00471 708 aa13.51□□□□□ -0.25
LIG3-203ENST00000585370 AMPHP49418 695 aa13.51□□□□□ -0.25
LIG3-203ENST00000585370 LMOD3Q0VAK6 560 aa13.51□□□□□ -0.25
LIG3-203ENST00000585370 NEUROD2Q15784 382 aa13.51□□□□□ -0.25
LIG3-203ENST00000585370 MAP3K19Q56UN5 1328 aa13.5□□□□□ -0.25
LIG3-203ENST00000585370 CT47B1P0C2W7 299 aaPredicted RBP13.5□□□□□ -0.25
LIG3-203ENST00000585370 PRKAR2BP31323 418 aa13.5□□□□□ -0.25
LIG3-203ENST00000585370 RIPK4P57078 832 aa13.5□□□□□ -0.25
LIG3-203ENST00000585370 EIF4A2Q14240 407 aaKnown RBP13.5□□□□□ -0.25
LIG3-203ENST00000585370 WNK3Q9BYP7 1800 aa13.49□□□□□ -0.25
LIG3-203ENST00000585370 NFE2L2Q16236 605 aa13.49□□□□□ -0.25
LIG3-203ENST00000585370 ANO8Q9HCE9 1232 aaPredicted RBP13.49□□□□□ -0.25
LIG3-203ENST00000585370 RRP7AQ9Y3A4 280 aaKnown RBP13.49□□□□□ -0.25
LIG3-203ENST00000585370 RTL1A6NKG5 1358 aa13.48□□□□□ -0.25
LIG3-203ENST00000585370 KCNQ2O43526 872 aa13.48□□□□□ -0.25
LIG3-203ENST00000585370 PDGFDQ9GZP0 370 aaPredicted RBP13.48□□□□□ -0.25
LIG3-203ENST00000585370 SPON1Q9HCB6 807 aa13.48□□□□□ -0.25
LIG3-203ENST00000585370 ERBB3P21860 1342 aa13.47□□□□□ -0.25
LIG3-203ENST00000585370 HSP90AB2PQ58FF8 381 aa13.47□□□□□ -0.25
LIG3-203ENST00000585370 NLRP2Q9NX02 1062 aa13.47□□□□□ -0.25
LIG3-203ENST00000585370 TRIM35Q9UPQ4 493 aa13.47□□□□□ -0.25
LIG3-203ENST00000585370 RGPD3A6NKT7 1758 aaPredicted RBP13.47□□□□□ -0.25
LIG3-203ENST00000585370 RGPD4Q7Z3J3 1758 aa13.47□□□□□ -0.25
LIG3-203ENST00000585370 ABCC6O95255 1503 aa13.46□□□□□ -0.25
LIG3-203ENST00000585370 HMOX1P09601 288 aa13.46□□□□□ -0.25
LIG3-203ENST00000585370 IRX6P78412 446 aaPredicted RBP13.46□□□□□ -0.25
LIG3-203ENST00000585370 SPINK5Q9NQ38 1064 aaPredicted RBP13.46□□□□□ -0.25
LIG3-203ENST00000585370 HOXC9P31274 260 aa13.45□□□□□ -0.26
LIG3-203ENST00000585370 TXNRD1Q16881 649 aa13.45□□□□□ -0.26
LIG3-203ENST00000585370 SULT6B1Q6IMI4 303 aa13.45□□□□□ -0.26
LIG3-203ENST00000585370 ANKRD24Q8TF21 1146 aa13.45□□□□□ -0.26
LIG3-203ENST00000585370 IP6K1Q92551 441 aa13.45□□□□□ -0.26
LIG3-203ENST00000585370 IL2RBP14784 551 aa13.44□□□□□ -0.26
LIG3-203ENST00000585370 ACSBG1Q96GR2 724 aa13.44□□□□□ -0.26
LIG3-203ENST00000585370 PPP1R1BQ9UD71 204 aaPredicted RBP13.44□□□□□ -0.26
LIG3-203ENST00000585370 TNS2Q63HR2 1409 aa13.44□□□□□ -0.26
LIG3-203ENST00000585370 LTN1O94822 1766 aa13.43□□□□□ -0.26
LIG3-203ENST00000585370 PHACTR3Q96KR7 559 aa13.43□□□□□ -0.26
LIG3-203ENST00000585370 IGSF1Q8N6C5 1336 aa13.42□□□□□ -0.26
LIG3-203ENST00000585370 ZBTB7AO95365 584 aa13.42□□□□□ -0.26
LIG3-203ENST00000585370 GNAI1P63096 354 aa13.42□□□□□ -0.26
LIG3-203ENST00000585370 ZNF428Q96B54 188 aa13.42□□□□□ -0.26
LIG3-203ENST00000585370 KDRP35968 1356 aa13.42□□□□□ -0.26
LIG3-203ENST00000585370 CASZ1Q86V15 1759 aa13.41□□□□□ -0.26
LIG3-203ENST00000585370 SLC15A2Q16348 729 aa13.41□□□□□ -0.26
LIG3-203ENST00000585370 STK32BQ9NY57 414 aa13.41□□□□□ -0.26
LIG3-203ENST00000585370 KAT6BQ8WYB5 2073 aa13.4□□□□□ -0.26
LIG3-203ENST00000585370 HTATSF1O43719 755 aaKnown RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 398.7 ms