RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 AGBL1Q96MI9 1066 aa8.14□□□□□ -1.11
SS18-223ENST00000583595 SOS2Q07890 1332 aaPredicted RBP8.13□□□□□ -1.11
SS18-223ENST00000583595 LOC105371045A0A1W2PR82 267 aa8.13□□□□□ -1.11
SS18-223ENST00000583595 ABL2P42684 1182 aa8.13□□□□□ -1.11
SS18-223ENST00000583595 TBC1D2BQ9UPU7 963 aa8.13□□□□□ -1.11
SS18-223ENST00000583595 LILRA1O75019 489 aa8.12□□□□□ -1.11
SS18-223ENST00000583595 RBM25P49756 843 aaKnown RBP8.12□□□□□ -1.11
SS18-223ENST00000583595 VEGFBP49765 207 aa8.12□□□□□ -1.11
SS18-223ENST00000583595 MCCD1P59942 119 aaPredicted RBP8.12□□□□□ -1.11
SS18-223ENST00000583595 RELBQ01201 579 aa8.12□□□□□ -1.11
SS18-223ENST00000583595 SLC16A10Q8TF71 515 aa8.12□□□□□ -1.11
SS18-223ENST00000583595 TTLL8A6PVC2 850 aa8.11□□□□□ -1.11
SS18-223ENST00000583595 SPINT1O43278 529 aa8.11□□□□□ -1.11
SS18-223ENST00000583595 ADD1P35611 737 aaKnown RBP8.11□□□□□ -1.11
SS18-223ENST00000583595 LCE2CQ5TA81 110 aa8.11□□□□□ -1.11
SS18-223ENST00000583595 NPAS3Q8IXF0 933 aa8.11□□□□□ -1.11
SS18-223ENST00000583595 PRM3Q9NNZ6 103 aa8.11□□□□□ -1.11
SS18-223ENST00000583595 CYLDQ9NQC7 956 aa8.11□□□□□ -1.11
SS18-223ENST00000583595 DNMT3LQ9UJW3 386 aa8.11□□□□□ -1.11
SS18-223ENST00000583595 ZNF592Q92610 1267 aa8.1□□□□□ -1.11
SS18-223ENST00000583595 GLMNQ92990 594 aa8.1□□□□□ -1.11
SS18-223ENST00000583595 ZNF395Q9H8N7 513 aaPredicted RBP8.1□□□□□ -1.11
SS18-223ENST00000583595 FIGNL2A6NMB9 653 aa8.09□□□□□ -1.11
SS18-223ENST00000583595 H3BM21 787 aa8.09□□□□□ -1.11
SS18-223ENST00000583595 ADH1AP07327 375 aa8.09□□□□□ -1.11
SS18-223ENST00000583595 RFX1P22670 979 aa8.09□□□□□ -1.11
SS18-223ENST00000583595 RNF20Q5VTR2 975 aa8.09□□□□□ -1.11
SS18-223ENST00000583595 CCDC125Q86Z20 511 aa8.08□□□□□ -1.12
SS18-223ENST00000583595 INSM2Q96T92 566 aaPredicted RBP8.08□□□□□ -1.12
SS18-223ENST00000583595 CARNS1A5YM72 827 aa8.07□□□□□ -1.12
SS18-223ENST00000583595 PTGIRP43119 386 aa8.07□□□□□ -1.12
SS18-223ENST00000583595 CTSOP43234 321 aaPredicted RBP8.07□□□□□ -1.12
SS18-223ENST00000583595 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.07□□□□□ -1.12
SS18-223ENST00000583595 HDGFL1Q5TGJ6 251 aa8.07□□□□□ -1.12
SS18-223ENST00000583595 WWC1Q8IX03 1113 aa8.07□□□□□ -1.12
SS18-223ENST00000583595 KDF1Q8NAX2 398 aaPredicted RBP8.07□□□□□ -1.12
SS18-223ENST00000583595 IRF7Q92985 503 aa8.07□□□□□ -1.12
SS18-223ENST00000583595 TRIM52Q96A61 297 aa8.07□□□□□ -1.12
SS18-223ENST00000583595 WIPF1O43516 503 aa8.06□□□□□ -1.12
SS18-223ENST00000583595 POLMQ9NP87 494 aaPredicted RBP8.06□□□□□ -1.12
SS18-223ENST00000583595 PCDHB11Q9Y5F2 797 aa8.06□□□□□ -1.12
SS18-223ENST00000583595 PDE4CQ08493 712 aa8.05□□□□□ -1.12
SS18-223ENST00000583595 CEP126Q9P2H0 1117 aa8.05□□□□□ -1.12
SS18-223ENST00000583595 ERBB4Q15303 1308 aa8.04□□□□□ -1.12
SS18-223ENST00000583595 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.04□□□□□ -1.12
SS18-223ENST00000583595 PPFIA3O75145 1194 aa8.04□□□□□ -1.12
SS18-223ENST00000583595 GMPRP36959 345 aa8.04□□□□□ -1.12
SS18-223ENST00000583595 ERVK-9P63128 1117 aa8.04□□□□□ -1.12
SS18-223ENST00000583595 EIF4G2P78344 907 aaKnown RBP eCLIP8.04□□□□□ -1.12
SS18-223ENST00000583595 PTSQ03393 145 aa8.04□□□□□ -1.12
SS18-223ENST00000583595 CC2D2BQ6DHV5 1058 aa8.04□□□□□ -1.12
SS18-223ENST00000583595 ATP5J2-PTCD1G3V325 749 aa8.03□□□□□ -1.12
SS18-223ENST00000583595 IGSF3O75054 1194 aa8.03□□□□□ -1.12
SS18-223ENST00000583595 VAC14Q08AM6 782 aa8.03□□□□□ -1.12
SS18-223ENST00000583595 SCTRP47872 440 aa8.02□□□□□ -1.13
SS18-223ENST00000583595 SRPK2P78362 688 aaKnown RBP8.02□□□□□ -1.13
SS18-223ENST00000583595 RNF217Q8TC41 542 aa8.02□□□□□ -1.13
SS18-223ENST00000583595 ADAMTS19Q8TE59 1207 aa8.02□□□□□ -1.13
SS18-223ENST00000583595 PBXIP1Q96AQ6 731 aa8.02□□□□□ -1.13
SS18-223ENST00000583595 ESF1Q9H501 851 aaKnown RBP8.01□□□□□ -1.13
SS18-223ENST00000583595 MEN1O00255 615 aa8□□□□□ -1.13
SS18-223ENST00000583595 BRD1O95696 1058 aa8□□□□□ -1.13
SS18-223ENST00000583595 INSM1Q01101 510 aaPredicted RBP8□□□□□ -1.13
SS18-223ENST00000583595 WASHC4Q2M389 1173 aa8□□□□□ -1.13
SS18-223ENST00000583595 CFAP70Q5T0N1 1121 aa8□□□□□ -1.13
SS18-223ENST00000583595 CCDC85AQ96PX6 553 aaPredicted RBP8□□□□□ -1.13
SS18-223ENST00000583595 CDCA7Q9BWT1 371 aaPredicted RBP8□□□□□ -1.13
SS18-223ENST00000583595 A0A1W2PRU2 124 aa7.99□□□□□ -1.13
SS18-223ENST00000583595 VSIG8P0DPA2 414 aa7.99□□□□□ -1.13
SS18-223ENST00000583595 KCNA1Q09470 495 aa7.99□□□□□ -1.13
SS18-223ENST00000583595 SLFNL1Q499Z3 407 aa7.99□□□□□ -1.13
SS18-223ENST00000583595 CYP2U1Q7Z449 544 aa7.99□□□□□ -1.13
SS18-223ENST00000583595 CCDC155Q8N6L0 562 aa7.99□□□□□ -1.13
SS18-223ENST00000583595 OSBPL3Q9H4L5 887 aa7.99□□□□□ -1.13
SS18-223ENST00000583595 SHROOM4Q9ULL8 1493 aa7.99□□□□□ -1.13
SS18-223ENST00000583595 SLC35F4A4IF30 521 aa7.98□□□□□ -1.13
SS18-223ENST00000583595 E9PSI1 815 aa7.98□□□□□ -1.13
SS18-223ENST00000583595 CSB-PGBD3P0DP91 1061 aa7.98□□□□□ -1.13
SS18-223ENST00000583595 RNF144AP50876 292 aaPredicted RBP7.98□□□□□ -1.13
SS18-223ENST00000583595 TSGA10IPQ3SY00 556 aa7.98□□□□□ -1.13
SS18-223ENST00000583595 LYSMD3Q7Z3D4 306 aa7.98□□□□□ -1.13
SS18-223ENST00000583595 PHTF2Q8N3S3 785 aa7.98□□□□□ -1.13
SS18-223ENST00000583595 PATL2C9JE40 543 aaKnown RBP7.97□□□□□ -1.13
SS18-223ENST00000583595 MYCP01106 439 aaPredicted RBP7.97□□□□□ -1.13
SS18-223ENST00000583595 CDCA8Q53HL2 280 aa7.97□□□□□ -1.13
SS18-223ENST00000583595 PRICKLE2Q7Z3G6 844 aa7.97□□□□□ -1.13
SS18-223ENST00000583595 RNF135Q8IUD6 432 aa7.97□□□□□ -1.13
SS18-223ENST00000583595 NLRP3Q96P20 1036 aa7.97□□□□□ -1.13
SS18-223ENST00000583595 SEMA3FQ13275 785 aa7.96□□□□□ -1.14
SS18-223ENST00000583595 CLN3Q13286 438 aa7.96□□□□□ -1.14
SS18-223ENST00000583595 PPP1R12CQ9BZL4 782 aa7.96□□□□□ -1.14
SS18-223ENST00000583595 ARHGEF10LQ9HCE6 1279 aa7.96□□□□□ -1.14
SS18-223ENST00000583595 DOLKQ9UPQ8 538 aa7.96□□□□□ -1.14
SS18-223ENST00000583595 SENP3-EIF4A1A0A087X0R7 540 aa7.95□□□□□ -1.14
SS18-223ENST00000583595 RHOQP17081 205 aa7.95□□□□□ -1.14
SS18-223ENST00000583595 GPC1P35052 558 aa7.95□□□□□ -1.14
SS18-223ENST00000583595 USTQ9Y2C2 406 aa7.95□□□□□ -1.14
SS18-223ENST00000583595 IVNS1ABPQ9Y6Y0 642 aa7.95□□□□□ -1.14
SS18-223ENST00000583595 PALM3A6NDB9 673 aaPredicted RBP7.94□□□□□ -1.14
SS18-223ENST00000583595 ITGA6P23229 1130 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms