RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 NEUROD2Q15784 382 aa16.94■□□□□ 0.3
ITGB4-207ENST00000580542 PHF23Q9BUL5 403 aaPredicted RBP16.94■□□□□ 0.3
ITGB4-207ENST00000580542 NCKAP5LQ9HCH0 1330 aa16.93■□□□□ 0.3
ITGB4-207ENST00000580542 RUNDC1Q96C34 613 aa16.93■□□□□ 0.3
ITGB4-207ENST00000580542 SSH2Q76I76 1423 aa16.93■□□□□ 0.3
ITGB4-207ENST00000580542 ADGRL3Q9HAR2 1447 aa16.93■□□□□ 0.3
ITGB4-207ENST00000580542 FYB1O15117 783 aa16.93■□□□□ 0.3
ITGB4-207ENST00000580542 IGSF3O75054 1194 aa16.92■□□□□ 0.3
ITGB4-207ENST00000580542 ATP2B3Q16720 1220 aa16.92■□□□□ 0.3
ITGB4-207ENST00000580542 STRCP1A6NGW2 1772 aa16.92■□□□□ 0.3
ITGB4-207ENST00000580542 TCP11L2Q8N4U5 519 aa16.92■□□□□ 0.3
ITGB4-207ENST00000580542 TNNQ9UQP3 1299 aa16.92■□□□□ 0.3
ITGB4-207ENST00000580542 DDX49Q9Y6V7 483 aaKnown RBP16.92■□□□□ 0.3
ITGB4-207ENST00000580542 USP54Q70EL1 1684 aa16.91■□□□□ 0.3
ITGB4-207ENST00000580542 TSC1Q92574 1164 aa16.91■□□□□ 0.3
ITGB4-207ENST00000580542 JARID2Q92833 1246 aaPredicted RBP16.91■□□□□ 0.3
ITGB4-207ENST00000580542 GOLGA6L22H0YM25 854 aa16.91■□□□□ 0.3
ITGB4-207ENST00000580542 RLBP1P12271 317 aa16.91■□□□□ 0.3
ITGB4-207ENST00000580542 MCM5P33992 734 aa16.9■□□□□ 0.3
ITGB4-207ENST00000580542 ZNF771Q7L3S4 317 aaPredicted RBP16.9■□□□□ 0.3
ITGB4-207ENST00000580542 MYRIPQ8NFW9 859 aa16.9■□□□□ 0.3
ITGB4-207ENST00000580542 SPDYE4A6NLX3 237 aa16.89■□□□□ 0.3
ITGB4-207ENST00000580542 PCDHB15Q9Y5E8 787 aa16.89■□□□□ 0.3
ITGB4-207ENST00000580542 COL3A1P02461 1466 aaPredicted RBP16.89■□□□□ 0.29
ITGB4-207ENST00000580542 KLHL34Q8N239 644 aa16.89■□□□□ 0.29
ITGB4-207ENST00000580542 USP6P35125 1406 aa16.89■□□□□ 0.29
ITGB4-207ENST00000580542 HSP90AB1P08238 724 aaKnown RBP16.89■□□□□ 0.29
ITGB4-207ENST00000580542 RAB3GAP1Q15042 981 aa16.88■□□□□ 0.29
ITGB4-207ENST00000580542 WDR63Q8IWG1 891 aa16.88■□□□□ 0.29
ITGB4-207ENST00000580542 ZNF710Q8N1W2 664 aa16.88■□□□□ 0.29
ITGB4-207ENST00000580542 ZFP91Q96JP5 570 aaPredicted RBP16.88■□□□□ 0.29
ITGB4-207ENST00000580542 NCOA3Q9Y6Q9 1424 aa16.88■□□□□ 0.29
ITGB4-207ENST00000580542 MTHFSP49914 203 aa16.87■□□□□ 0.29
ITGB4-207ENST00000580542 PMFBP1Q8TBY8 1022 aa16.87■□□□□ 0.29
ITGB4-207ENST00000580542 BCL2L13Q9BXK5 485 aa16.87■□□□□ 0.29
ITGB4-207ENST00000580542 CIZ1Q9ULV3 898 aaPredicted RBP16.87■□□□□ 0.29
ITGB4-207ENST00000580542 DDIT3P35638 169 aa16.87■□□□□ 0.29
ITGB4-207ENST00000580542 PDLIM2Q96JY6 352 aa16.86■□□□□ 0.29
ITGB4-207ENST00000580542 CCDC39Q9UFE4 941 aa16.86■□□□□ 0.29
ITGB4-207ENST00000580542 PNPLA6Q8IY17 1366 aa16.86■□□□□ 0.29
ITGB4-207ENST00000580542 CCDC27Q2M243 656 aa16.86■□□□□ 0.29
ITGB4-207ENST00000580542 PDZRN3Q9UPQ7 1066 aa16.86■□□□□ 0.29
ITGB4-207ENST00000580542 LRRC7Q96NW7 1537 aa16.86■□□□□ 0.29
ITGB4-207ENST00000580542 IBTKQ9P2D0 1353 aaPredicted RBP16.85■□□□□ 0.29
ITGB4-207ENST00000580542 KLHL40Q2TBA0 621 aa16.85■□□□□ 0.29
ITGB4-207ENST00000580542 CHMP4AQ9BY43 222 aa16.85■□□□□ 0.29
ITGB4-207ENST00000580542 FOXD4L1Q9NU39 408 aa16.85■□□□□ 0.29
ITGB4-207ENST00000580542 AATKQ6ZMQ8 1374 aa16.85■□□□□ 0.29
ITGB4-207ENST00000580542 ACEP12821 1306 aa16.85■□□□□ 0.29
ITGB4-207ENST00000580542 GGNBP2Q9H3C7 697 aa16.84■□□□□ 0.29
ITGB4-207ENST00000580542 OVOS2A0A0J9YW53 1432 aa16.84■□□□□ 0.29
ITGB4-207ENST00000580542 OVOS2Q6IE36 1432 aa16.84■□□□□ 0.29
ITGB4-207ENST00000580542 MAP2P11137 1827 aaKnown RBP16.84■□□□□ 0.29
ITGB4-207ENST00000580542 RBSNQ9H1K0 784 aa16.84■□□□□ 0.29
ITGB4-207ENST00000580542 MARF1Q9Y4F3 1742 aaKnown RBP16.84■□□□□ 0.29
ITGB4-207ENST00000580542 SMC5Q8IY18 1101 aa16.83■□□□□ 0.28
ITGB4-207ENST00000580542 FAM177BA6PVY3 158 aa16.83■□□□□ 0.28
ITGB4-207ENST00000580542 KCNJ4P48050 445 aa16.83■□□□□ 0.28
ITGB4-207ENST00000580542 IRX5P78411 483 aaPredicted RBP16.83■□□□□ 0.28
ITGB4-207ENST00000580542 KIAA2012Q0VF49 1180 aa16.83■□□□□ 0.28
ITGB4-207ENST00000580542 CFAP53Q96M91 514 aa16.83■□□□□ 0.28
ITGB4-207ENST00000580542 PIK3C2AO00443 1686 aa16.82■□□□□ 0.28
ITGB4-207ENST00000580542 PTMAP06454 111 aaKnown RBP16.82■□□□□ 0.28
ITGB4-207ENST00000580542 ZNF445P59923 1031 aa16.82■□□□□ 0.28
ITGB4-207ENST00000580542 CAVIN1Q6NZI2 390 aaKnown RBP16.82■□□□□ 0.28
ITGB4-207ENST00000580542 DCCP43146 1447 aa16.82■□□□□ 0.28
ITGB4-207ENST00000580542 XIRP1Q702N8 1843 aaKnown RBP16.82■□□□□ 0.28
ITGB4-207ENST00000580542 HMGN5P82970 282 aaKnown RBP16.82■□□□□ 0.28
ITGB4-207ENST00000580542 TTC21BQ7Z4L5 1316 aa16.81■□□□□ 0.28
ITGB4-207ENST00000580542 PDCL2Q8N4E4 241 aa16.81■□□□□ 0.28
ITGB4-207ENST00000580542 PRIMPOLQ96LW4 560 aa16.81■□□□□ 0.28
ITGB4-207ENST00000580542 USP31Q70CQ4 1352 aa16.81■□□□□ 0.28
ITGB4-207ENST00000580542 IRX3P78415 501 aaPredicted RBP16.81■□□□□ 0.28
ITGB4-207ENST00000580542 TTC21AQ8NDW8 1320 aa16.81■□□□□ 0.28
ITGB4-207ENST00000580542 KIF3AQ9Y496 699 aa16.8■□□□□ 0.28
ITGB4-207ENST00000580542 ZSCAN23Q3MJ62 389 aa16.8■□□□□ 0.28
ITGB4-207ENST00000580542 RBM25P49756 843 aaKnown RBP16.79■□□□□ 0.28
ITGB4-207ENST00000580542 NCBP3Q53F19 620 aaKnown RBP16.79■□□□□ 0.28
ITGB4-207ENST00000580542 RWDD1Q9H446 243 aaPredicted RBP16.79■□□□□ 0.28
ITGB4-207ENST00000580542 KIF1AQ12756 1690 aa16.79■□□□□ 0.28
ITGB4-207ENST00000580542 SSFA2P28290 1259 aa16.79■□□□□ 0.28
ITGB4-207ENST00000580542 MVPQ14764 893 aaKnown RBP16.79■□□□□ 0.28
ITGB4-207ENST00000580542 TEX2Q8IWB9 1127 aa16.79■□□□□ 0.28
ITGB4-207ENST00000580542 CDK12Q9NYV4 1490 aaPredicted RBP16.79■□□□□ 0.28
ITGB4-207ENST00000580542 U2AF1L5P0DN76 240 aaPredicted RBP16.78■□□□□ 0.28
ITGB4-207ENST00000580542 HSPA2P54652 639 aa16.78■□□□□ 0.28
ITGB4-207ENST00000580542 U2AF1Q01081 240 aaKnown RBP eCLIP16.78■□□□□ 0.28
ITGB4-207ENST00000580542 NME9Q86XW9 330 aa16.78■□□□□ 0.28
ITGB4-207ENST00000580542 PRIM1P49642 420 aaKnown RBP16.78■□□□□ 0.28
ITGB4-207ENST00000580542 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.78■□□□□ 0.28
ITGB4-207ENST00000580542 DNAJC2Q99543 621 aaKnown RBP16.78■□□□□ 0.28
ITGB4-207ENST00000580542 U2AF2P26368 475 aaKnown RBP eCLIP16.77■□□□□ 0.28
ITGB4-207ENST00000580542 SNX21Q969T3 373 aa16.77■□□□□ 0.28
ITGB4-207ENST00000580542 GTF2F1P35269 517 aaKnown RBP eCLIP16.76■□□□□ 0.27
ITGB4-207ENST00000580542 ZKSCAN2Q63HK3 967 aa16.76■□□□□ 0.27
ITGB4-207ENST00000580542 SECISBP2LQ93073 1101 aaKnown RBP16.76■□□□□ 0.27
ITGB4-207ENST00000580542 TSR2Q969E8 191 aaKnown RBP16.76■□□□□ 0.27
ITGB4-207ENST00000580542 BAG4O95429 457 aaKnown RBP16.75■□□□□ 0.27
ITGB4-207ENST00000580542 DZIP1LQ8IYY4 767 aaKnown RBP16.75■□□□□ 0.27
ITGB4-207ENST00000580542 BCL2L12Q9HB09 334 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms