RNA–Protein interactions for RNA: ENST00000579853.5

CDK5RAP3-216, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 714 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-216ENST00000579853 PRIM1P49642 420 aaKnown RBP17.33■□□□□ 0.36
CDK5RAP3-216ENST00000579853 PUS7Q96PZ0 661 aaKnown RBP17.33■□□□□ 0.36
CDK5RAP3-216ENST00000579853 MAPK8IP2Q13387 824 aaPredicted RBP17.32■□□□□ 0.36
CDK5RAP3-216ENST00000579853 NLGN2Q8NFZ4 835 aa17.32■□□□□ 0.36
CDK5RAP3-216ENST00000579853 PPP4R3CPQ6ZMV5 832 aa17.31■□□□□ 0.36
CDK5RAP3-216ENST00000579853 ZCRB1Q8TBF4 217 aaKnown RBP17.31■□□□□ 0.36
CDK5RAP3-216ENST00000579853 SLC12A5Q9H2X9 1139 aa17.31■□□□□ 0.36
CDK5RAP3-216ENST00000579853 CCNL1Q9UK58 526 aaPredicted RBP17.31■□□□□ 0.36
CDK5RAP3-216ENST00000579853 TUBGCP6Q96RT7 1819 aa17.31■□□□□ 0.36
CDK5RAP3-216ENST00000579853 LY75O60449 1722 aa17.3■□□□□ 0.36
CDK5RAP3-216ENST00000579853 SHANK3Q9BYB0 1731 aa17.3■□□□□ 0.36
CDK5RAP3-216ENST00000579853 CARD11Q9BXL7 1154 aa17.3■□□□□ 0.36
CDK5RAP3-216ENST00000579853 NEUROD1Q13562 356 aa17.29■□□□□ 0.36
CDK5RAP3-216ENST00000579853 LTV1Q96GA3 475 aaPredicted RBP17.29■□□□□ 0.36
CDK5RAP3-216ENST00000579853 SIN3AQ96ST3 1273 aa17.29■□□□□ 0.36
CDK5RAP3-216ENST00000579853 A0A1W2PP64 1363 aa17.28■□□□□ 0.36
CDK5RAP3-216ENST00000579853 USP47Q96K76 1375 aa17.28■□□□□ 0.36
CDK5RAP3-216ENST00000579853 CGNL1Q0VF96 1302 aa17.28■□□□□ 0.36
CDK5RAP3-216ENST00000579853 FLAD1Q8NFF5 587 aa17.28■□□□□ 0.36
CDK5RAP3-216ENST00000579853 COG3Q96JB2 828 aa17.28■□□□□ 0.36
CDK5RAP3-216ENST00000579853 DOT1LQ8TEK3 1739 aa17.27■□□□□ 0.36
CDK5RAP3-216ENST00000579853 YBX3P16989 372 aaKnown RBP eCLIP17.27■□□□□ 0.36
CDK5RAP3-216ENST00000579853 AMPHP49418 695 aa17.27■□□□□ 0.36
CDK5RAP3-216ENST00000579853 KCNQ4P56696 695 aa17.27■□□□□ 0.36
CDK5RAP3-216ENST00000579853 NSD2O96028 1365 aa17.27■□□□□ 0.35
CDK5RAP3-216ENST00000579853 SLC24A1O60721 1099 aa17.26■□□□□ 0.35
CDK5RAP3-216ENST00000579853 HOXC9P31274 260 aa17.26■□□□□ 0.35
CDK5RAP3-216ENST00000579853 CD2APQ9Y5K6 639 aa17.26■□□□□ 0.35
CDK5RAP3-216ENST00000579853 MAP3K19Q56UN5 1328 aa17.25■□□□□ 0.35
CDK5RAP3-216ENST00000579853 COL23A1Q86Y22 540 aaPredicted RBP17.25■□□□□ 0.35
CDK5RAP3-216ENST00000579853 ATP10DQ9P241 1426 aa17.24■□□□□ 0.35
CDK5RAP3-216ENST00000579853 GPBP1L1Q9HC44 474 aaPredicted RBP17.24■□□□□ 0.35
CDK5RAP3-216ENST00000579853 RTL1A6NKG5 1358 aa17.23■□□□□ 0.35
CDK5RAP3-216ENST00000579853 RAPGEF4Q8WZA2 1011 aa17.22■□□□□ 0.35
CDK5RAP3-216ENST00000579853 MEGF6O75095 1541 aa17.21■□□□□ 0.35
CDK5RAP3-216ENST00000579853 SMG6Q86US8 1419 aaKnown RBP17.21■□□□□ 0.34
CDK5RAP3-216ENST00000579853 MSL1Q68DK7 614 aa17.2■□□□□ 0.34
CDK5RAP3-216ENST00000579853 TATP17735 454 aaPredicted RBP17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 NBPF6Q5VWK0 638 aa17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 NBPF4Q96M43 638 aa17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 C5P01031 1676 aa17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 PCDH11XQ9BZA7 1347 aa17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 PCDH11YQ9BZA8 1340 aa17.19■□□□□ 0.34
CDK5RAP3-216ENST00000579853 RGPD2P0DJD1 1756 aa17.18■□□□□ 0.34
CDK5RAP3-216ENST00000579853 HSPA6P17066 643 aa17.18■□□□□ 0.34
CDK5RAP3-216ENST00000579853 SMARCC1Q92922 1105 aaPredicted RBP17.18■□□□□ 0.34
CDK5RAP3-216ENST00000579853 NSD3Q9BZ95 1437 aa17.18■□□□□ 0.34
CDK5RAP3-216ENST00000579853 ADCY9O60503 1353 aa17.17■□□□□ 0.34
CDK5RAP3-216ENST00000579853 PALLDQ8WX93 1383 aa17.17■□□□□ 0.34
CDK5RAP3-216ENST00000579853 AK7Q96M32 723 aa17.16■□□□□ 0.34
CDK5RAP3-216ENST00000579853 TAF1LQ8IZX4 1826 aa17.15■□□□□ 0.34
CDK5RAP3-216ENST00000579853 FBLN1P23142 703 aa17.14■□□□□ 0.33
CDK5RAP3-216ENST00000579853 RRS1Q15050 365 aaKnown RBP17.14■□□□□ 0.33
CDK5RAP3-216ENST00000579853 MPRIPQ6WCQ1 1025 aa17.14■□□□□ 0.33
CDK5RAP3-216ENST00000579853 KIF24Q5T7B8 1368 aa17.14■□□□□ 0.33
CDK5RAP3-216ENST00000579853 USHBP1Q8N6Y0 703 aa17.13■□□□□ 0.33
CDK5RAP3-216ENST00000579853 TESK2Q96S53 571 aa17.13■□□□□ 0.33
CDK5RAP3-216ENST00000579853 IGSF1Q8N6C5 1336 aa17.13■□□□□ 0.33
CDK5RAP3-216ENST00000579853 INSRP06213 1382 aa17.13■□□□□ 0.33
CDK5RAP3-216ENST00000579853 ZNF526Q8TF50 670 aaPredicted RBP17.12■□□□□ 0.33
CDK5RAP3-216ENST00000579853 TONSLQ96HA7 1378 aa17.12■□□□□ 0.33
CDK5RAP3-216ENST00000579853 C4BP0C0L5 1744 aa17.11■□□□□ 0.33
CDK5RAP3-216ENST00000579853 ST20-MTHFSA0A0A6YYL1 179 aa17.11■□□□□ 0.33
CDK5RAP3-216ENST00000579853 FYB1O15117 783 aa17.11■□□□□ 0.33
CDK5RAP3-216ENST00000579853 SSFA2P28290 1259 aa17.11■□□□□ 0.33
CDK5RAP3-216ENST00000579853 FLT4P35916 1363 aa17.11■□□□□ 0.33
CDK5RAP3-216ENST00000579853 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.1■□□□□ 0.33
CDK5RAP3-216ENST00000579853 GGNBP2Q9H3C7 697 aa17.1■□□□□ 0.33
CDK5RAP3-216ENST00000579853 CYP27B1O15528 508 aa17.09■□□□□ 0.33
CDK5RAP3-216ENST00000579853 UBR3Q6ZT12 1888 aa17.09■□□□□ 0.33
CDK5RAP3-216ENST00000579853 PHF14O94880 888 aa17.08■□□□□ 0.32
CDK5RAP3-216ENST00000579853 HSP90AB2PQ58FF8 381 aa17.08■□□□□ 0.32
CDK5RAP3-216ENST00000579853 PCNTO95613 3336 aa17.08■□□□□ 0.32
CDK5RAP3-216ENST00000579853 ITGB4P16144 1822 aa17.07■□□□□ 0.32
CDK5RAP3-216ENST00000579853 NKX1-1Q15270 411 aaPredicted RBP17.07■□□□□ 0.32
CDK5RAP3-216ENST00000579853 KIF3CO14782 793 aa17.06■□□□□ 0.32
CDK5RAP3-216ENST00000579853 APLP1P51693 650 aa17.06■□□□□ 0.32
CDK5RAP3-216ENST00000579853 PIGBQ92521 554 aa17.06■□□□□ 0.32
CDK5RAP3-216ENST00000579853 SPG7Q9UQ90 795 aa17.06■□□□□ 0.32
CDK5RAP3-216ENST00000579853 LOC102724428A0A0B4J2F2 783 aa17.05■□□□□ 0.32
CDK5RAP3-216ENST00000579853 SIK1P57059 783 aa17.05■□□□□ 0.32
CDK5RAP3-216ENST00000579853 TMF1P82094 1093 aa17.05■□□□□ 0.32
CDK5RAP3-216ENST00000579853 CDCA8Q53HL2 280 aa17.05■□□□□ 0.32
CDK5RAP3-216ENST00000579853 TOGARAM1Q9Y4F4 1720 aa17.04■□□□□ 0.32
CDK5RAP3-216ENST00000579853 AMIGO3Q86WK7 504 aa17.04■□□□□ 0.32
CDK5RAP3-216ENST00000579853 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.04■□□□□ 0.323e-16■■□□□ 12.1
CDK5RAP3-216ENST00000579853 PKD1L3Q7Z443 1732 aa17.04■□□□□ 0.32
CDK5RAP3-216ENST00000579853 CICQ96RK0 1608 aaPredicted RBP17.03■□□□□ 0.32
CDK5RAP3-216ENST00000579853 TOMM70O94826 608 aa17.03■□□□□ 0.32
CDK5RAP3-216ENST00000579853 TGFB2P61812 414 aa17.03■□□□□ 0.32
CDK5RAP3-216ENST00000579853 TMOD3Q9NYL9 352 aa17.03■□□□□ 0.32
CDK5RAP3-216ENST00000579853 GNPATO15228 680 aa17.02■□□□□ 0.32
CDK5RAP3-216ENST00000579853 LINC00116Q8NCU8 138 aa17.02■□□□□ 0.32
CDK5RAP3-216ENST00000579853 WWC3Q9ULE0 1092 aa17.02■□□□□ 0.32
CDK5RAP3-216ENST00000579853 MAP2P11137 1827 aaKnown RBP17.02■□□□□ 0.31
CDK5RAP3-216ENST00000579853 KIF20BQ96Q89 1820 aa17.01■□□□□ 0.31
CDK5RAP3-216ENST00000579853 ATP6V1AP38606 617 aa17.01■□□□□ 0.31
CDK5RAP3-216ENST00000579853 NLGN1Q8N2Q7 840 aa17.01■□□□□ 0.31
CDK5RAP3-216ENST00000579853 NCAPD2Q15021 1401 aa17.01■□□□□ 0.31
CDK5RAP3-216ENST00000579853 MMP10P09238 476 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms