RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 USP46P62068 366 aa8.63□□□□□ -1.03
VPS53-219ENST00000576019 EIF4G2P78344 907 aaKnown RBP eCLIP8.63□□□□□ -1.032e-8■■■■■ 33.8
VPS53-219ENST00000576019 BIN2Q9UBW5 565 aaPredicted RBP8.63□□□□□ -1.03
VPS53-219ENST00000576019 TSKSQ9UJT2 592 aa8.63□□□□□ -1.03
VPS53-219ENST00000576019 CNTLNQ9NXG0 1405 aa8.63□□□□□ -1.03
VPS53-219ENST00000576019 KDM5CP41229 1560 aa8.62□□□□□ -1.03
VPS53-219ENST00000576019 USP17L3A6NCW0 530 aa8.62□□□□□ -1.03
VPS53-219ENST00000576019 USP17L4A6NCW7 530 aa8.62□□□□□ -1.03
VPS53-219ENST00000576019 EMP3P54852 163 aa8.62□□□□□ -1.03
VPS53-219ENST00000576019 USP17L2Q6R6M4 530 aa8.62□□□□□ -1.03
VPS53-219ENST00000576019 USP17L1Q7RTZ2 530 aa8.62□□□□□ -1.03
VPS53-219ENST00000576019 MROH2AA6NES4 1674 aa8.62□□□□□ -1.03
VPS53-219ENST00000576019 UTRNP46939 3433 aa8.61□□□□□ -1.03
VPS53-219ENST00000576019 NWD1Q149M9 1564 aa8.61□□□□□ -1.03
VPS53-219ENST00000576019 SPATA31A6Q5VVP1 1343 aa8.61□□□□□ -1.03
VPS53-219ENST00000576019 COL9A1P20849 921 aa8.61□□□□□ -1.03
VPS53-219ENST00000576019 PRELPP51888 382 aa8.61□□□□□ -1.03
VPS53-219ENST00000576019 SLF2Q8IX21 1173 aa8.61□□□□□ -1.03
VPS53-219ENST00000576019 PNMA3Q9UL41 463 aa8.61□□□□□ -1.03
VPS53-219ENST00000576019 BIVM-ERCC5R4GMW8 1640 aa8.61□□□□□ -1.03
VPS53-219ENST00000576019 REREQ9P2R6 1566 aa8.61□□□□□ -1.03
VPS53-219ENST00000576019 UGGT2Q9NYU1 1516 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 NBPF26B4DH59 902 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L15C9J2P7 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L10C9JJH3 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L13C9JLJ4 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L12C9JPN9 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L11C9JVI0 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L21D6R901 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L18D6R9N7 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L22D6RA61 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L17D6RBQ6 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L19D6RCP7 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L20D6RJB6 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 GCGRP47871 477 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 USP17L24Q0WX57 530 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 ARSIQ5FYB1 569 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 MEX3CQ5U5Q3 659 aaKnown RBP8.6□□□□□ -1.03
VPS53-219ENST00000576019 DEPDC4Q8N2C3 294 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 PNMA1Q8ND90 353 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 SREK1Q8WXA9 508 aaKnown RBP8.6□□□□□ -1.03
VPS53-219ENST00000576019 DRC1Q96MC2 740 aa8.6□□□□□ -1.03
VPS53-219ENST00000576019 ANKRD33BA6NCL7 494 aa8.59□□□□□ -1.03
VPS53-219ENST00000576019 C6orf229H3BNL8 230 aa8.59□□□□□ -1.03
VPS53-219ENST00000576019 SCNN1AP37088 669 aa8.59□□□□□ -1.03
VPS53-219ENST00000576019 RBM6P78332 1123 aaKnown RBP8.59□□□□□ -1.03
VPS53-219ENST00000576019 CRTC2Q53ET0 693 aaPredicted RBP8.59□□□□□ -1.03
VPS53-219ENST00000576019 NPAS4Q8IUM7 802 aa8.59□□□□□ -1.03
VPS53-219ENST00000576019 CHMP4AQ9BY43 222 aa8.59□□□□□ -1.03
VPS53-219ENST00000576019 USP17L5A8MUK1 530 aa8.58□□□□□ -1.04
VPS53-219ENST00000576019 SKIP12755 728 aa8.58□□□□□ -1.04
VPS53-219ENST00000576019 TATDN2Q93075 761 aa8.58□□□□□ -1.04
VPS53-219ENST00000576019 C8orf37Q96NL8 207 aa8.58□□□□□ -1.04
VPS53-219ENST00000576019 XIRP1Q702N8 1843 aaKnown RBP8.58□□□□□ -1.04
VPS53-219ENST00000576019 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.58□□□□□ -1.04
VPS53-219ENST00000576019 DNMT1P26358 1616 aaKnown RBP8.58□□□□□ -1.04
VPS53-219ENST00000576019 PHLPP1O60346 1717 aa8.57□□□□□ -1.04
VPS53-219ENST00000576019 FAM196BA6NMK8 535 aa8.57□□□□□ -1.04
VPS53-219ENST00000576019 SMAPO00193 183 aa8.57□□□□□ -1.04
VPS53-219ENST00000576019 PPM1GO15355 546 aaPredicted RBP8.57□□□□□ -1.04
VPS53-219ENST00000576019 PER1O15534 1290 aaPredicted RBP8.57□□□□□ -1.04
VPS53-219ENST00000576019 ESF1Q9H501 851 aaKnown RBP8.57□□□□□ -1.04
VPS53-219ENST00000576019 MED14O60244 1454 aa8.57□□□□□ -1.04
VPS53-219ENST00000576019 FGD6Q6ZV73 1430 aa8.56□□□□□ -1.04
VPS53-219ENST00000576019 COL16A1Q07092 1604 aaPredicted RBP8.56□□□□□ -1.04
VPS53-219ENST00000576019 SMARCA5O60264 1052 aaPredicted RBP8.56□□□□□ -1.04
VPS53-219ENST00000576019 ATP2B4P23634 1241 aa8.56□□□□□ -1.04
VPS53-219ENST00000576019 KHSRPQ92945 711 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS53-219ENST00000576019 PPP1R1BQ9UD71 204 aaPredicted RBP8.56□□□□□ -1.04
VPS53-219ENST00000576019 POTEB3A0JP26 581 aa8.55□□□□□ -1.04
VPS53-219ENST00000576019 FAM205CA6NFA0 338 aa8.55□□□□□ -1.04
VPS53-219ENST00000576019 NUDT7P0C024 238 aa8.55□□□□□ -1.04
VPS53-219ENST00000576019 FBXO45P0C2W1 286 aa8.55□□□□□ -1.04
VPS53-219ENST00000576019 NR1H3Q13133 447 aa8.55□□□□□ -1.04
VPS53-219ENST00000576019 ZNF326Q5BKZ1 582 aaKnown RBP8.55□□□□□ -1.04
VPS53-219ENST00000576019 POTEBQ6S5H4 581 aa8.55□□□□□ -1.04
VPS53-219ENST00000576019 FAM174AQ8TBP5 190 aa8.55□□□□□ -1.04
VPS53-219ENST00000576019 CLP1Q92989 425 aaKnown RBP8.55□□□□□ -1.04
VPS53-219ENST00000576019 HS3ST6Q96QI5 342 aa8.55□□□□□ -1.04
VPS53-219ENST00000576019 A2ML1A8K2U0 1454 aa8.55□□□□□ -1.04
VPS53-219ENST00000576019 ATP10BO94823 1461 aa8.54□□□□□ -1.04
VPS53-219ENST00000576019 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.54□□□□□ -1.04
VPS53-219ENST00000576019 EIF5BO60841 1220 aaKnown RBP8.54□□□□□ -1.04
VPS53-219ENST00000576019 ZC3H6P61129 1189 aaKnown RBP8.54□□□□□ -1.04
VPS53-219ENST00000576019 TAGLNQ01995 201 aaKnown RBP8.54□□□□□ -1.04
VPS53-219ENST00000576019 PLEKHM2Q8IWE5 1019 aa8.54□□□□□ -1.04
VPS53-219ENST00000576019 NFATC2IPQ8NCF5 419 aa8.54□□□□□ -1.04
VPS53-219ENST00000576019 FAM200AQ8TCP9 573 aa8.54□□□□□ -1.04
VPS53-219ENST00000576019 SYMPKQ92797 1274 aaKnown RBP8.54□□□□□ -1.04
VPS53-219ENST00000576019 MKRN1Q9UHC7 482 aaKnown RBP8.54□□□□□ -1.04
VPS53-219ENST00000576019 ERBB3P21860 1342 aa8.54□□□□□ -1.04
VPS53-219ENST00000576019 AFF2P51816 1311 aa8.54□□□□□ -1.04
VPS53-219ENST00000576019 SHPRHQ149N8 1683 aa8.53□□□□□ -1.04
VPS53-219ENST00000576019 ZMYM3Q14202 1370 aa8.53□□□□□ -1.04
VPS53-219ENST00000576019 PSDA5PKW4 1024 aaPredicted RBP8.53□□□□□ -1.04
VPS53-219ENST00000576019 RECKO95980 971 aa8.53□□□□□ -1.04
VPS53-219ENST00000576019 SLC10A3P09131 477 aa8.53□□□□□ -1.04
VPS53-219ENST00000576019 RASA1P20936 1047 aa8.53□□□□□ -1.04
VPS53-219ENST00000576019 PTK7Q13308 1070 aa8.53□□□□□ -1.04
VPS53-219ENST00000576019 LARP1Q6PKG0 1096 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms