RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 KCNQ4P56696 695 aa12.72□□□□□ -0.37
SMG6-218ENST00000575454 NHSQ6T4R5 1651 aa12.72□□□□□ -0.37
SMG6-218ENST00000575454 PAPPAQ13219 1627 aa12.72□□□□□ -0.37
SMG6-218ENST00000575454 YBX3P16989 372 aaKnown RBP eCLIP12.71□□□□□ -0.37
SMG6-218ENST00000575454 HOXC9P31274 260 aa12.71□□□□□ -0.37
SMG6-218ENST00000575454 COL23A1Q86Y22 540 aaPredicted RBP12.7□□□□□ -0.38
SMG6-218ENST00000575454 GPBP1L1Q9HC44 474 aaPredicted RBP12.7□□□□□ -0.38
SMG6-218ENST00000575454 CD163L1Q9NR16 1453 aa12.7□□□□□ -0.38
SMG6-218ENST00000575454 A0A1W2PP64 1363 aa12.69□□□□□ -0.38
SMG6-218ENST00000575454 MAP3K19Q56UN5 1328 aa12.69□□□□□ -0.38
SMG6-218ENST00000575454 RAPGEF4Q8WZA2 1011 aa12.69□□□□□ -0.38
SMG6-218ENST00000575454 AKAP12Q02952 1782 aa12.69□□□□□ -0.38
SMG6-218ENST00000575454 NSD2O96028 1365 aa12.68□□□□□ -0.38
SMG6-218ENST00000575454 TATP17735 454 aaPredicted RBP12.67□□□□□ -0.38
SMG6-218ENST00000575454 SMARCC1Q92922 1105 aaPredicted RBP12.67□□□□□ -0.38
SMG6-218ENST00000575454 SHANK3Q9BYB0 1731 aa12.67□□□□□ -0.38
SMG6-218ENST00000575454 WNK3Q9BYP7 1800 aa12.67□□□□□ -0.38
SMG6-218ENST00000575454 ATP10DQ9P241 1426 aa12.66□□□□□ -0.38
SMG6-218ENST00000575454 MSL1Q68DK7 614 aa12.66□□□□□ -0.38
SMG6-218ENST00000575454 RTL1A6NKG5 1358 aa12.66□□□□□ -0.38
SMG6-218ENST00000575454 HSPA6P17066 643 aa12.65□□□□□ -0.38
SMG6-218ENST00000575454 NBPF6Q5VWK0 638 aa12.65□□□□□ -0.38
SMG6-218ENST00000575454 NBPF4Q96M43 638 aa12.65□□□□□ -0.38
SMG6-218ENST00000575454 PCDH11XQ9BZA7 1347 aa12.64□□□□□ -0.39
SMG6-218ENST00000575454 PCDH11YQ9BZA8 1340 aa12.64□□□□□ -0.39
SMG6-218ENST00000575454 SMG6Q86US8 1419 aaKnown RBP12.64□□□□□ -0.39
SMG6-218ENST00000575454 AK7Q96M32 723 aa12.64□□□□□ -0.39
SMG6-218ENST00000575454 MPRIPQ6WCQ1 1025 aa12.63□□□□□ -0.39
SMG6-218ENST00000575454 PALLDQ8WX93 1383 aa12.63□□□□□ -0.39
SMG6-218ENST00000575454 FBLN1P23142 703 aa12.62□□□□□ -0.39
SMG6-218ENST00000575454 BTAF1O14981 1849 aa12.62□□□□□ -0.39
SMG6-218ENST00000575454 MEGF6O75095 1541 aa12.62□□□□□ -0.39
SMG6-218ENST00000575454 NSD3Q9BZ95 1437 aa12.62□□□□□ -0.39
SMG6-218ENST00000575454 ST20-MTHFSA0A0A6YYL1 179 aa12.61□□□□□ -0.39
SMG6-218ENST00000575454 FYB1O15117 783 aa12.61□□□□□ -0.39
SMG6-218ENST00000575454 RRS1Q15050 365 aaKnown RBP12.61□□□□□ -0.39
SMG6-218ENST00000575454 USHBP1Q8N6Y0 703 aa12.61□□□□□ -0.39
SMG6-218ENST00000575454 TESK2Q96S53 571 aa12.61□□□□□ -0.39
SMG6-218ENST00000575454 USP54Q70EL1 1684 aa12.61□□□□□ -0.39
SMG6-218ENST00000575454 ADCY9O60503 1353 aa12.6□□□□□ -0.39
SMG6-218ENST00000575454 KIF24Q5T7B8 1368 aa12.6□□□□□ -0.39
SMG6-218ENST00000575454 TONSLQ96HA7 1378 aa12.6□□□□□ -0.39
SMG6-218ENST00000575454 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.6□□□□□ -0.39
SMG6-218ENST00000575454 SSFA2P28290 1259 aa12.6□□□□□ -0.39
SMG6-218ENST00000575454 ZNF526Q8TF50 670 aaPredicted RBP12.6□□□□□ -0.39
SMG6-218ENST00000575454 IGSF1Q8N6C5 1336 aa12.6□□□□□ -0.39
SMG6-218ENST00000575454 MON2Q7Z3U7 1717 aa12.59□□□□□ -0.39
SMG6-218ENST00000575454 INSRP06213 1382 aa12.59□□□□□ -0.39
SMG6-218ENST00000575454 CYP27B1O15528 508 aa12.59□□□□□ -0.39
SMG6-218ENST00000575454 GGNBP2Q9H3C7 697 aa12.59□□□□□ -0.39
SMG6-218ENST00000575454 PHF14O94880 888 aa12.58□□□□□ -0.4
SMG6-218ENST00000575454 TMF1P82094 1093 aa12.58□□□□□ -0.4
SMG6-218ENST00000575454 NKX1-1Q15270 411 aaPredicted RBP12.58□□□□□ -0.4
SMG6-218ENST00000575454 CDCA8Q53HL2 280 aa12.58□□□□□ -0.4
SMG6-218ENST00000575454 HSP90AB2PQ58FF8 381 aa12.58□□□□□ -0.4
SMG6-218ENST00000575454 PIGBQ92521 554 aa12.58□□□□□ -0.4
SMG6-218ENST00000575454 SPG7Q9UQ90 795 aa12.58□□□□□ -0.4
SMG6-218ENST00000575454 RGPD5Q99666 1765 aa12.58□□□□□ -0.4
SMG6-218ENST00000575454 FLT4P35916 1363 aa12.57□□□□□ -0.4
SMG6-218ENST00000575454 PCNTO95613 3336 aa12.57□□□□□ -0.4
SMG6-218ENST00000575454 APLP1P51693 650 aa12.57□□□□□ -0.4
SMG6-218ENST00000575454 LOC102724428A0A0B4J2F2 783 aa12.56□□□□□ -0.4
SMG6-218ENST00000575454 SIK1P57059 783 aa12.56□□□□□ -0.4
SMG6-218ENST00000575454 TGFB2P61812 414 aa12.56□□□□□ -0.4
SMG6-218ENST00000575454 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.56□□□□□ -0.4
SMG6-218ENST00000575454 QSER1Q2KHR3 1735 aa12.55□□□□□ -0.4
SMG6-218ENST00000575454 KIF3CO14782 793 aa12.55□□□□□ -0.4
SMG6-218ENST00000575454 TMOD3Q9NYL9 352 aa12.55□□□□□ -0.4
SMG6-218ENST00000575454 COL24A1Q17RW2 1714 aa12.54□□□□□ -0.4
SMG6-218ENST00000575454 GNPATO15228 680 aa12.54□□□□□ -0.4
SMG6-218ENST00000575454 TOMM70O94826 608 aa12.54□□□□□ -0.4
SMG6-218ENST00000575454 NLGN1Q8N2Q7 840 aa12.54□□□□□ -0.4
SMG6-218ENST00000575454 FAM208AQ9UK61 1670 aaKnown RBP12.54□□□□□ -0.4
SMG6-218ENST00000575454 ATP6V1AP38606 617 aa12.53□□□□□ -0.4
SMG6-218ENST00000575454 AMIGO3Q86WK7 504 aa12.53□□□□□ -0.4
SMG6-218ENST00000575454 LINC00116Q8NCU8 138 aa12.53□□□□□ -0.4
SMG6-218ENST00000575454 LTN1O94822 1766 aa12.52□□□□□ -0.41
SMG6-218ENST00000575454 MMP10P09238 476 aa12.52□□□□□ -0.41
SMG6-218ENST00000575454 TRAPPC3LQ5T215 181 aa12.52□□□□□ -0.41
SMG6-218ENST00000575454 IFNL2Q8IZJ0 200 aa12.52□□□□□ -0.41
SMG6-218ENST00000575454 WWC3Q9ULE0 1092 aa12.52□□□□□ -0.41
SMG6-218ENST00000575454 ADRA2BP18089 450 aa12.51□□□□□ -0.41
SMG6-218ENST00000575454 RTCBQ9Y3I0 505 aaKnown RBP12.51□□□□□ -0.41
SMG6-218ENST00000575454 PPM1GO15355 546 aaPredicted RBP12.5□□□□□ -0.41
SMG6-218ENST00000575454 SMIM5Q71RC9 77 aa12.5□□□□□ -0.41
SMG6-218ENST00000575454 CCDC87Q9NVE4 849 aa12.5□□□□□ -0.41
SMG6-218ENST00000575454 ASAP1Q9ULH1 1129 aa12.5□□□□□ -0.41
SMG6-218ENST00000575454 BCS1LQ9Y276 419 aa12.5□□□□□ -0.41
SMG6-218ENST00000575454 EMILIN1Q9Y6C2 1016 aa12.5□□□□□ -0.41
SMG6-218ENST00000575454 WASHC2AQ641Q2 1341 aa12.5□□□□□ -0.41
SMG6-218ENST00000575454 LY75O60449 1722 aa12.49□□□□□ -0.41
SMG6-218ENST00000575454 PHKG2P15735 406 aa12.49□□□□□ -0.41
SMG6-218ENST00000575454 ITPK1Q13572 414 aa12.49□□□□□ -0.41
SMG6-218ENST00000575454 RC3H1Q5TC82 1133 aaKnown RBP12.49□□□□□ -0.41
SMG6-218ENST00000575454 ARHGAP27Q6ZUM4 889 aa12.49□□□□□ -0.41
SMG6-218ENST00000575454 C16orf71Q8IYS4 520 aaPredicted RBP12.49□□□□□ -0.41
SMG6-218ENST00000575454 TUBGCP6Q96RT7 1819 aa12.48□□□□□ -0.41
SMG6-218ENST00000575454 DOT1LQ8TEK3 1739 aa12.48□□□□□ -0.41
SMG6-218ENST00000575454 A0A0G2JLW4 131 aa12.48□□□□□ -0.41
SMG6-218ENST00000575454 HSP90AB1P08238 724 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms