RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 NCAPD2Q15021 1401 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 MEGF6O75095 1541 aa8.7□□□□□ -1.02
VPS53-209ENST00000570771 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.69□□□□□ -1.02
VPS53-209ENST00000570771 NWD2Q9ULI1 1742 aa8.69□□□□□ -1.02
VPS53-209ENST00000570771 HAP1P54257 671 aaPredicted RBP8.69□□□□□ -1.02
VPS53-209ENST00000570771 ASTLQ6HA08 431 aaPredicted RBP8.69□□□□□ -1.02
VPS53-209ENST00000570771 AEBP1Q8IUX7 1158 aa8.69□□□□□ -1.02
VPS53-209ENST00000570771 KCNH5Q8NCM2 988 aa8.69□□□□□ -1.02
VPS53-209ENST00000570771 ANKRD24Q8TF21 1146 aa8.69□□□□□ -1.02
VPS53-209ENST00000570771 LTV1Q96GA3 475 aaPredicted RBP8.69□□□□□ -1.02
VPS53-209ENST00000570771 FAM163AQ96GL9 167 aaPredicted RBP8.69□□□□□ -1.02
VPS53-209ENST00000570771 NGLY1Q96IV0 654 aa8.69□□□□□ -1.02
VPS53-209ENST00000570771 STRN4Q9NRL3 753 aa8.69□□□□□ -1.02
VPS53-209ENST00000570771 CREBZFQ9NS37 354 aa8.69□□□□□ -1.02
VPS53-209ENST00000570771 INSRP06213 1382 aa8.69□□□□□ -1.02
VPS53-209ENST00000570771 DISP2A7MBM2 1401 aa8.69□□□□□ -1.02
VPS53-209ENST00000570771 PPM1GO15355 546 aaPredicted RBP8.68□□□□□ -1.02
VPS53-209ENST00000570771 C7P10643 843 aa8.68□□□□□ -1.02
VPS53-209ENST00000570771 MEX3CQ5U5Q3 659 aaKnown RBP8.68□□□□□ -1.02
VPS53-209ENST00000570771 NBPF6Q5VWK0 638 aa8.68□□□□□ -1.02
VPS53-209ENST00000570771 SLC39A7Q92504 469 aa8.68□□□□□ -1.02
VPS53-209ENST00000570771 NBPF4Q96M43 638 aa8.68□□□□□ -1.02
VPS53-209ENST00000570771 USP21Q9UK80 565 aa8.68□□□□□ -1.02
VPS53-209ENST00000570771 RGS12O14924 1447 aa8.68□□□□□ -1.02
VPS53-209ENST00000570771 BLMP54132 1417 aaPredicted RBP8.68□□□□□ -1.02
VPS53-209ENST00000570771 CCER2I3L3R5 266 aa8.67□□□□□ -1.02
VPS53-209ENST00000570771 IL13P35225 146 aa8.67□□□□□ -1.02
VPS53-209ENST00000570771 UNC5CLQ8IV45 518 aa8.67□□□□□ -1.02
VPS53-209ENST00000570771 WDR17Q8IZU2 1322 aa8.67□□□□□ -1.02
VPS53-209ENST00000570771 MIER1Q8N108 512 aa8.67□□□□□ -1.02
VPS53-209ENST00000570771 THSD7AQ9UPZ6 1657 aa8.67□□□□□ -1.02
VPS53-209ENST00000570771 MAP2P11137 1827 aaKnown RBP8.66□□□□□ -1.02
VPS53-209ENST00000570771 SPATA31A1Q5TZJ5 1347 aa8.66□□□□□ -1.02
VPS53-209ENST00000570771 SPATA31A5Q5VU36 1347 aa8.66□□□□□ -1.02
VPS53-209ENST00000570771 SPATA31A7Q8IWB4 1347 aa8.66□□□□□ -1.02
VPS53-209ENST00000570771 MYBBP1AQ9BQG0 1328 aaKnown RBP8.66□□□□□ -1.02
VPS53-209ENST00000570771 AMPHP49418 695 aa8.66□□□□□ -1.02
VPS53-209ENST00000570771 EYA1Q99502 592 aa8.66□□□□□ -1.02
VPS53-209ENST00000570771 LRRC37A3O60309 1634 aa8.65□□□□□ -1.02
VPS53-209ENST00000570771 CRB1P82279 1406 aa8.65□□□□□ -1.02
VPS53-209ENST00000570771 IGSF1Q8N6C5 1336 aa8.65□□□□□ -1.02
VPS53-209ENST00000570771 VPS72Q15906 364 aa8.65□□□□□ -1.02
VPS53-209ENST00000570771 ILDR2Q71H61 639 aa8.65□□□□□ -1.02
VPS53-209ENST00000570771 USP35Q9P2H5 1018 aa8.65□□□□□ -1.02
VPS53-209ENST00000570771 WNK3Q9BYP7 1800 aa8.65□□□□□ -1.02
VPS53-209ENST00000570771 SHANK3Q9BYB0 1731 aa8.65□□□□□ -1.03
VPS53-209ENST00000570771 KIF24Q5T7B8 1368 aa8.64□□□□□ -1.03
VPS53-209ENST00000570771 SENP3-EIF4A1A0A087X0R7 540 aa8.64□□□□□ -1.03
VPS53-209ENST00000570771 QTRT2Q9H974 415 aaKnown RBP8.64□□□□□ -1.03
VPS53-209ENST00000570771 SCUBE2Q9NQ36 999 aa8.64□□□□□ -1.03
VPS53-209ENST00000570771 ATMINO43313 823 aaPredicted RBP8.63□□□□□ -1.03
VPS53-209ENST00000570771 FAM98CQ17RN3 349 aaKnown RBP8.63□□□□□ -1.03
VPS53-209ENST00000570771 FAM182BQ5T319 152 aa8.63□□□□□ -1.03
VPS53-209ENST00000570771 NLRP2Q9NX02 1062 aa8.63□□□□□ -1.03
VPS53-209ENST00000570771 KDRP35968 1356 aa8.62□□□□□ -1.03
VPS53-209ENST00000570771 HMOX1P09601 288 aa8.62□□□□□ -1.03
VPS53-209ENST00000570771 TOM1L2Q6ZVM7 507 aa8.62□□□□□ -1.03
VPS53-209ENST00000570771 CDAN1Q8IWY9 1227 aa8.62□□□□□ -1.03
VPS53-209ENST00000570771 GJD4Q96KN9 370 aaPredicted RBP8.62□□□□□ -1.03
VPS53-209ENST00000570771 CARD10Q9BWT7 1032 aa8.62□□□□□ -1.03
VPS53-209ENST00000570771 OVOS2A0A0G2JMS6 1433 aa8.62□□□□□ -1.03
VPS53-209ENST00000570771 CSB-PGBD3P0DP91 1061 aa8.61□□□□□ -1.03
VPS53-209ENST00000570771 PTF1AQ7RTS3 328 aa8.61□□□□□ -1.03
VPS53-209ENST00000570771 CFAP53Q96M91 514 aa8.61□□□□□ -1.03
VPS53-209ENST00000570771 RSPH6AQ9H0K4 717 aa8.61□□□□□ -1.03
VPS53-209ENST00000570771 MRS2Q9HD23 443 aa8.61□□□□□ -1.03
VPS53-209ENST00000570771 TRPC5Q9UL62 973 aaPredicted RBP8.61□□□□□ -1.03
VPS53-209ENST00000570771 TNS2Q63HR2 1409 aa8.61□□□□□ -1.03
VPS53-209ENST00000570771 DIAPH1O60610 1272 aaKnown RBP8.6□□□□□ -1.03
VPS53-209ENST00000570771 SULT6B1Q6IMI4 303 aa8.6□□□□□ -1.03
VPS53-209ENST00000570771 TCP11L2Q8N4U5 519 aa8.6□□□□□ -1.03
VPS53-209ENST00000570771 PHACTR3Q96KR7 559 aa8.6□□□□□ -1.03
VPS53-209ENST00000570771 CCDC9Q9Y3X0 531 aaKnown RBP8.6□□□□□ -1.03
VPS53-209ENST00000570771 PKD1L3Q7Z443 1732 aa8.6□□□□□ -1.03
VPS53-209ENST00000570771 PARP4Q9UKK3 1724 aaKnown RBP8.6□□□□□ -1.03
VPS53-209ENST00000570771 TOGARAM1Q9Y4F4 1720 aa8.6□□□□□ -1.03
VPS53-209ENST00000570771 U2SURPO15042 1029 aaKnown RBP8.59□□□□□ -1.03
VPS53-209ENST00000570771 ONECUT3O60422 494 aaPredicted RBP8.59□□□□□ -1.03
VPS53-209ENST00000570771 EVA1CP58658 441 aa8.59□□□□□ -1.03
VPS53-209ENST00000570771 ZNF772Q68DY9 489 aaPredicted RBP8.59□□□□□ -1.03
VPS53-209ENST00000570771 SEPT12Q8IYM1 358 aa8.59□□□□□ -1.03
VPS53-209ENST00000570771 BRWD3Q6RI45 1802 aa8.59□□□□□ -1.03
VPS53-209ENST00000570771 KDM6AO15550 1401 aaPredicted RBP8.58□□□□□ -1.04
VPS53-209ENST00000570771 CYP27B1O15528 508 aa8.58□□□□□ -1.04
VPS53-209ENST00000570771 RBM6P78332 1123 aaKnown RBP8.58□□□□□ -1.04
VPS53-209ENST00000570771 BARGINQ6ZT62 677 aa8.58□□□□□ -1.04
VPS53-209ENST00000570771 CCDC146Q8IYE0 955 aa8.58□□□□□ -1.04
VPS53-209ENST00000570771 MARCH10Q8NA82 808 aaPredicted RBP8.58□□□□□ -1.04
VPS53-209ENST00000570771 PNISRQ8TF01 805 aaKnown RBP8.58□□□□□ -1.04
VPS53-209ENST00000570771 MS4A3Q96HJ5 214 aa8.58□□□□□ -1.04
VPS53-209ENST00000570771 PLEKHF1Q96S99 279 aa8.58□□□□□ -1.04
VPS53-209ENST00000570771 ADAMTS8Q9UP79 889 aa8.58□□□□□ -1.04
VPS53-209ENST00000570771 PRKAR2BP31323 418 aa8.57□□□□□ -1.04
VPS53-209ENST00000570771 U2AF1L5P0DN76 240 aaPredicted RBP8.56□□□□□ -1.04
VPS53-209ENST00000570771 IL2RBP14784 551 aa8.56□□□□□ -1.04
VPS53-209ENST00000570771 RXRBP28702 533 aa8.56□□□□□ -1.04
VPS53-209ENST00000570771 U2AF1Q01081 240 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS53-209ENST00000570771 WDR43Q15061 677 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS53-209ENST00000570771 MTHFSDQ2M296 383 aaKnown RBP8.56□□□□□ -1.04
VPS53-209ENST00000570771 NUDCQ9Y266 331 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms