RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 EVI5O60447 810 aa8.81□□□□□ -1
VPS53-208ENST00000570650 TRIM37O94972 964 aa8.81□□□□□ -1
VPS53-208ENST00000570650 CDAN1Q8IWY9 1227 aa8.81□□□□□ -1
VPS53-208ENST00000570650 KDM2AQ9Y2K7 1162 aa8.81□□□□□ -1
VPS53-208ENST00000570650 THSD7AQ9UPZ6 1657 aa8.81□□□□□ -1
VPS53-208ENST00000570650 APBA3O96018 575 aa8.8□□□□□ -1
VPS53-208ENST00000570650 TMEM132EQ6IEE7 984 aa8.8□□□□□ -1
VPS53-208ENST00000570650 FAM196AQ6ZSG2 479 aa8.8□□□□□ -1
VPS53-208ENST00000570650 SIRT1Q96EB6 747 aa8.8□□□□□ -1
VPS53-208ENST00000570650 PPP1R1BQ9UD71 204 aaPredicted RBP8.8□□□□□ -1
VPS53-208ENST00000570650 COL14A1Q05707 1796 aaKnown RBP8.8□□□□□ -1
VPS53-208ENST00000570650 IFT172Q9UG01 1749 aa8.8□□□□□ -1
VPS53-208ENST00000570650 YTHDC2Q9H6S0 1430 aaKnown RBP8.8□□□□□ -1
VPS53-208ENST00000570650 RGPD8O14715 1765 aaPredicted RBP8.79□□□□□ -1
VPS53-208ENST00000570650 ANKRD30BQ9BXX2 1392 aa8.79□□□□□ -1
VPS53-208ENST00000570650 NINLQ9Y2I6 1382 aa8.79□□□□□ -1
VPS53-208ENST00000570650 NBPF8Q3BBV2 869 aa8.79□□□□□ -1
VPS53-208ENST00000570650 NBPF14Q5TI25 921 aa8.79□□□□□ -1
VPS53-208ENST00000570650 SPON1Q9HCB6 807 aa8.79□□□□□ -1
VPS53-208ENST00000570650 KCNV2Q8TDN2 545 aa8.78□□□□□ -1
VPS53-208ENST00000570650 PIK3C2GO75747 1445 aa8.78□□□□□ -1
VPS53-208ENST00000570650 KCNQ2O43526 872 aa8.77□□□□□ -1.01
VPS53-208ENST00000570650 RGL3Q3MIN7 710 aa8.77□□□□□ -1.01
VPS53-208ENST00000570650 PMFBP1Q8TBY8 1022 aa8.77□□□□□ -1.01
VPS53-208ENST00000570650 ANO8Q9HCE9 1232 aaPredicted RBP8.77□□□□□ -1.01
VPS53-208ENST00000570650 RREB1Q92766 1687 aa8.77□□□□□ -1.01
VPS53-208ENST00000570650 ANKARQ7Z5J8 1434 aa8.77□□□□□ -1.01
VPS53-208ENST00000570650 SPATA31A1Q5TZJ5 1347 aa8.77□□□□□ -1.01
VPS53-208ENST00000570650 GPRASP1Q5JY77 1395 aa8.76□□□□□ -1.01
VPS53-208ENST00000570650 PRDM11Q9NQV5 511 aa8.76□□□□□ -1.01
VPS53-208ENST00000570650 NUP188Q5SRE5 1749 aa8.76□□□□□ -1.01
VPS53-208ENST00000570650 TRPM3Q9HCF6 1732 aaPredicted RBP8.76□□□□□ -1.01
VPS53-208ENST00000570650 SPATA31E1Q6ZUB1 1445 aa8.75□□□□□ -1.01
VPS53-208ENST00000570650 ZNF687Q8N1G0 1237 aa8.75□□□□□ -1.01
VPS53-208ENST00000570650 KRTAP3-3Q9BYR6 98 aa8.75□□□□□ -1.01
VPS53-208ENST00000570650 KRTAP3-2Q9BYR7 98 aa8.75□□□□□ -1.01
VPS53-208ENST00000570650 ARIH1Q9Y4X5 557 aaPredicted RBP8.75□□□□□ -1.01
VPS53-208ENST00000570650 ALS2Q96Q42 1657 aa8.75□□□□□ -1.01
VPS53-208ENST00000570650 DHX57Q6P158 1386 aaKnown RBP8.74□□□□□ -1.01
VPS53-208ENST00000570650 SENP3-EIF4A1A0A087X0R7 540 aa8.74□□□□□ -1.01
VPS53-208ENST00000570650 PDE3BQ13370 1112 aa8.74□□□□□ -1.01
VPS53-208ENST00000570650 SAFB2Q14151 953 aaKnown RBP eCLIP8.74□□□□□ -1.01
VPS53-208ENST00000570650 PDIA6Q15084 440 aa8.74□□□□□ -1.01
VPS53-208ENST00000570650 ZNF784Q8NCA9 323 aaPredicted RBP8.74□□□□□ -1.01
VPS53-208ENST00000570650 PRAM1Q96QH2 718 aa8.74□□□□□ -1.01
VPS53-208ENST00000570650 C14orf93Q9H972 538 aaKnown RBP8.74□□□□□ -1.01
VPS53-208ENST00000570650 PCDH10Q9P2E7 1040 aa8.74□□□□□ -1.01
VPS53-208ENST00000570650 ACIN1Q9UKV3 1341 aaKnown RBP8.74□□□□□ -1.01
VPS53-208ENST00000570650 FOSBP53539 338 aa8.73□□□□□ -1.01
VPS53-208ENST00000570650 IFFO2Q5TF58 517 aa8.73□□□□□ -1.01
VPS53-208ENST00000570650 POTEEQ6S8J3 1075 aa8.73□□□□□ -1.01
VPS53-208ENST00000570650 BARGINQ6ZT62 677 aa8.73□□□□□ -1.01
VPS53-208ENST00000570650 ZNF454Q8N9F8 522 aa8.73□□□□□ -1.01
VPS53-208ENST00000570650 STRN4Q9NRL3 753 aa8.73□□□□□ -1.01
VPS53-208ENST00000570650 EIF3AQ14152 1382 aaKnown RBP8.73□□□□□ -1.01
VPS53-208ENST00000570650 KIAA0232Q92628 1395 aa8.73□□□□□ -1.01
VPS53-208ENST00000570650 CAMTA1Q9Y6Y1 1673 aa8.72□□□□□ -1.01
VPS53-208ENST00000570650 CRYBG1Q9Y4K1 1723 aa8.72□□□□□ -1.01
VPS53-208ENST00000570650 CHRNA2Q15822 529 aa8.72□□□□□ -1.01
VPS53-208ENST00000570650 VSIG10Q8N0Z9 540 aa8.72□□□□□ -1.01
VPS53-208ENST00000570650 POGKQ9P215 609 aa8.72□□□□□ -1.01
VPS53-208ENST00000570650 USP35Q9P2H5 1018 aa8.72□□□□□ -1.01
VPS53-208ENST00000570650 DLC1Q96QB1 1528 aa8.71□□□□□ -1.01
VPS53-208ENST00000570650 C11orf95C9JLR9 678 aaPredicted RBP8.71□□□□□ -1.02
VPS53-208ENST00000570650 EVA1CP58658 441 aa8.71□□□□□ -1.02
VPS53-208ENST00000570650 PPP4R3BQ5MIZ7 849 aa8.71□□□□□ -1.02
VPS53-208ENST00000570650 CFAP70Q5T0N1 1121 aa8.71□□□□□ -1.02
VPS53-208ENST00000570650 NGDNQ8NEJ9 315 aaKnown RBP8.71□□□□□ -1.02
VPS53-208ENST00000570650 PRR36Q9H6K5 1346 aa8.71□□□□□ -1.02
VPS53-208ENST00000570650 SSH2Q76I76 1423 aa8.71□□□□□ -1.02
VPS53-208ENST00000570650 SPDYE16A6NNV3 312 aaPredicted RBP8.7□□□□□ -1.02
VPS53-208ENST00000570650 C1QTNF8P60827 252 aa8.7□□□□□ -1.02
VPS53-208ENST00000570650 PPARGC1BQ86YN6 1023 aaKnown RBP8.7□□□□□ -1.02
VPS53-208ENST00000570650 TCP11L2Q8N4U5 519 aa8.7□□□□□ -1.02
VPS53-208ENST00000570650 ARHGEF1Q92888 912 aaKnown RBP8.7□□□□□ -1.02
VPS53-208ENST00000570650 AXIN2Q9Y2T1 843 aa8.7□□□□□ -1.02
VPS53-208ENST00000570650 PCDHGA10Q9Y5H3 936 aa8.7□□□□□ -1.02
VPS53-208ENST00000570650 TULP4Q9NRJ4 1543 aa8.7□□□□□ -1.02
VPS53-208ENST00000570650 NRKQ7Z2Y5 1582 aa8.69□□□□□ -1.02
VPS53-208ENST00000570650 ZC3H6P61129 1189 aaKnown RBP8.69□□□□□ -1.02
VPS53-208ENST00000570650 DDX12PQ92771 950 aa8.69□□□□□ -1.02
VPS53-208ENST00000570650 HIRIP3Q9BW71 556 aaPredicted RBP8.69□□□□□ -1.02
VPS53-208ENST00000570650 WASLO00401 505 aaPredicted RBP8.68□□□□□ -1.02
VPS53-208ENST00000570650 PLSCR1O15162 318 aa8.68□□□□□ -1.02
VPS53-208ENST00000570650 PTGER2P43116 358 aa8.68□□□□□ -1.02
VPS53-208ENST00000570650 LARP1Q6PKG0 1096 aaKnown RBP8.68□□□□□ -1.02
VPS53-208ENST00000570650 THRAP3Q9Y2W1 955 aaKnown RBP8.68□□□□□ -1.02
VPS53-208ENST00000570650 MINK1Q8N4C8 1332 aaPredicted RBP8.68□□□□□ -1.02
VPS53-208ENST00000570650 ATP7BP35670 1465 aa8.68□□□□□ -1.02
VPS53-208ENST00000570650 PHRF1Q9P1Y6 1649 aaKnown RBP8.68□□□□□ -1.02
VPS53-208ENST00000570650 RGPD3A6NKT7 1758 aaPredicted RBP8.67□□□□□ -1.02
VPS53-208ENST00000570650 RGPD4Q7Z3J3 1758 aa8.67□□□□□ -1.02
VPS53-208ENST00000570650 CASZ1Q86V15 1759 aa8.67□□□□□ -1.02
VPS53-208ENST00000570650 ADAM33Q9BZ11 813 aa8.67□□□□□ -1.02
VPS53-208ENST00000570650 MYOM1P52179 1685 aa8.66□□□□□ -1.02
VPS53-208ENST00000570650 OVOS2A0A0G2JMS6 1433 aa8.66□□□□□ -1.02
VPS53-208ENST00000570650 OVOS2A0A0J9YW53 1432 aa8.66□□□□□ -1.02
VPS53-208ENST00000570650 OVOS2Q6IE36 1432 aa8.66□□□□□ -1.02
VPS53-208ENST00000570650 PHF14O94880 888 aa8.66□□□□□ -1.02
VPS53-208ENST00000570650 ZBTB7AO95365 584 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms