RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 AGBL1Q96MI9 1066 aa6.38□□□□□ -1.39
VPS39-212ENST00000570023 CDCA7Q9BWT1 371 aaPredicted RBP6.38□□□□□ -1.39
VPS39-212ENST00000570023 SOS2Q07890 1332 aaPredicted RBP6.37□□□□□ -1.39
VPS39-212ENST00000570023 ZEB1P37275 1124 aaPredicted RBP6.37□□□□□ -1.39
VPS39-212ENST00000570023 C6orf118Q5T5N4 469 aa6.37□□□□□ -1.39
VPS39-212ENST00000570023 OSBPL3Q9H4L5 887 aa6.37□□□□□ -1.39
VPS39-212ENST00000570023 DOLKQ9UPQ8 538 aa6.37□□□□□ -1.39
VPS39-212ENST00000570023 ATP5J2-PTCD1G3V325 749 aa6.36□□□□□ -1.39
VPS39-212ENST00000570023 RELBQ01201 579 aa6.36□□□□□ -1.39
VPS39-212ENST00000570023 USP4Q13107 963 aa6.36□□□□□ -1.39
VPS39-212ENST00000570023 PLPP7Q8NBV4 271 aa6.36□□□□□ -1.39
VPS39-212ENST00000570023 PIK3CDO00329 1044 aa6.35□□□□□ -1.39
VPS39-212ENST00000570023 LZTS3O60299 673 aaPredicted RBP6.35□□□□□ -1.39
VPS39-212ENST00000570023 MYCP01106 439 aaPredicted RBP6.35□□□□□ -1.39
VPS39-212ENST00000570023 CYP2U1Q7Z449 544 aa6.35□□□□□ -1.39
VPS39-212ENST00000570023 SIRT1Q96EB6 747 aa6.35□□□□□ -1.39
VPS39-212ENST00000570023 TTLL8A6PVC2 850 aa6.34□□□□□ -1.39
VPS39-212ENST00000570023 GNRH1P01148 92 aa6.34□□□□□ -1.39
VPS39-212ENST00000570023 RANGAP1P46060 587 aaPredicted RBP6.34□□□□□ -1.39
VPS39-212ENST00000570023 GLMNQ92990 594 aa6.34□□□□□ -1.39
VPS39-212ENST00000570023 INSM2Q96T92 566 aaPredicted RBP6.34□□□□□ -1.39
VPS39-212ENST00000570023 ZMYND15Q9H091 742 aa6.34□□□□□ -1.39
VPS39-212ENST00000570023 ESF1Q9H501 851 aaKnown RBP6.34□□□□□ -1.39
VPS39-212ENST00000570023 ZNF395Q9H8N7 513 aaPredicted RBP6.34□□□□□ -1.39
VPS39-212ENST00000570023 A0A1W2PRU2 124 aa6.33□□□□□ -1.4
VPS39-212ENST00000570023 CTSOP43234 321 aaPredicted RBP6.33□□□□□ -1.4
VPS39-212ENST00000570023 RNF144AP50876 292 aaPredicted RBP6.33□□□□□ -1.4
VPS39-212ENST00000570023 CLN3Q13286 438 aa6.33□□□□□ -1.4
VPS39-212ENST00000570023 ZNF775Q96BV0 537 aaPredicted RBP6.33□□□□□ -1.4
VPS39-212ENST00000570023 ARXQ96QS3 562 aa6.33□□□□□ -1.4
VPS39-212ENST00000570023 UCN2Q96RP3 112 aa6.33□□□□□ -1.4
VPS39-212ENST00000570023 DNMT3LQ9UJW3 386 aa6.33□□□□□ -1.4
VPS39-212ENST00000570023 MAN1A2O60476 641 aa6.32□□□□□ -1.4
VPS39-212ENST00000570023 SKIP12755 728 aa6.32□□□□□ -1.4
VPS39-212ENST00000570023 GPC1P35052 558 aa6.32□□□□□ -1.4
VPS39-212ENST00000570023 OXLD1Q5BKU9 147 aa6.32□□□□□ -1.4
VPS39-212ENST00000570023 RNF217Q8TC41 542 aa6.32□□□□□ -1.4
VPS39-212ENST00000570023 ATP9BO43861 1147 aa6.31□□□□□ -1.4
VPS39-212ENST00000570023 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.31□□□□□ -1.4
VPS39-212ENST00000570023 FOXD4L5Q5VV16 416 aaPredicted RBP6.31□□□□□ -1.4
VPS39-212ENST00000570023 TBC1D9Q6ZT07 1266 aa6.31□□□□□ -1.4
VPS39-212ENST00000570023 PLEKHM2Q8IWE5 1019 aa6.31□□□□□ -1.4
VPS39-212ENST00000570023 NPAS3Q8IXF0 933 aa6.31□□□□□ -1.4
VPS39-212ENST00000570023 XAGE2Q96GT9 111 aa6.31□□□□□ -1.4
VPS39-212ENST00000570023 SOBPA7XYQ1 873 aa6.3□□□□□ -1.4
VPS39-212ENST00000570023 USP17L5A8MUK1 530 aa6.3□□□□□ -1.4
VPS39-212ENST00000570023 EML3Q32P44 896 aa6.3□□□□□ -1.4
VPS39-212ENST00000570023 CALR3Q96L12 384 aaKnown RBP6.3□□□□□ -1.4
VPS39-212ENST00000570023 ESYT1Q9BSJ8 1104 aa6.3□□□□□ -1.4
VPS39-212ENST00000570023 POLMQ9NP87 494 aaPredicted RBP6.3□□□□□ -1.4
VPS39-212ENST00000570023 ZNF777Q9ULD5 760 aaPredicted RBP6.3□□□□□ -1.4
VPS39-212ENST00000570023 PCDHGA11Q9Y5H2 935 aa6.3□□□□□ -1.4
VPS39-212ENST00000570023 HRH3Q9Y5N1 445 aa6.3□□□□□ -1.4
VPS39-212ENST00000570023 FIGNL2A6NMB9 653 aa6.29□□□□□ -1.4
VPS39-212ENST00000570023 MEN1O00255 615 aa6.29□□□□□ -1.4
VPS39-212ENST00000570023 IL2RAP01589 272 aa6.29□□□□□ -1.4
VPS39-212ENST00000570023 NCOA4Q13772 614 aa6.29□□□□□ -1.4
VPS39-212ENST00000570023 GRIP2Q9C0E4 1043 aa6.29□□□□□ -1.4
VPS39-212ENST00000570023 ARHGEF10LQ9HCE6 1279 aa6.29□□□□□ -1.4
VPS39-212ENST00000570023 NXF1Q9UBU9 619 aaKnown RBP6.29□□□□□ -1.4
VPS39-212ENST00000570023 NOD1Q9Y239 953 aa6.29□□□□□ -1.4
VPS39-212ENST00000570023 USP17L3A6NCW0 530 aa6.28□□□□□ -1.4
VPS39-212ENST00000570023 USP17L4A6NCW7 530 aa6.28□□□□□ -1.4
VPS39-212ENST00000570023 WASLO00401 505 aaPredicted RBP6.28□□□□□ -1.4
VPS39-212ENST00000570023 TERTO14746 1132 aaKnown RBP6.28□□□□□ -1.4
VPS39-212ENST00000570023 ESCO1Q5FWF5 840 aa6.28□□□□□ -1.4
VPS39-212ENST00000570023 LCE2AQ5TA79 106 aaPredicted RBP6.28□□□□□ -1.4
VPS39-212ENST00000570023 USP17L2Q6R6M4 530 aa6.28□□□□□ -1.4
VPS39-212ENST00000570023 USP17L1Q7RTZ2 530 aa6.28□□□□□ -1.4
VPS39-212ENST00000570023 PPARGC1BQ86YN6 1023 aaKnown RBP6.28□□□□□ -1.4
VPS39-212ENST00000570023 CNKSR1Q969H4 720 aa6.28□□□□□ -1.4
VPS39-212ENST00000570023 NLRP3Q96P20 1036 aa6.28□□□□□ -1.4
VPS39-212ENST00000570023 PPP1R12CQ9BZL4 782 aa6.28□□□□□ -1.4
VPS39-212ENST00000570023 TFIP11Q9UBB9 837 aaKnown RBP6.28□□□□□ -1.4
VPS39-212ENST00000570023 PALM3A6NDB9 673 aaPredicted RBP6.27□□□□□ -1.41
VPS39-212ENST00000570023 SCNN1DP51172 638 aa6.27□□□□□ -1.41
VPS39-212ENST00000570023 CENPCQ03188 943 aa6.27□□□□□ -1.41
VPS39-212ENST00000570023 NFX1Q12986 1120 aaKnown RBP6.27□□□□□ -1.41
VPS39-212ENST00000570023 TREML4Q6UXN2 200 aa6.27□□□□□ -1.41
VPS39-212ENST00000570023 LYSMD3Q7Z3D4 306 aa6.27□□□□□ -1.41
VPS39-212ENST00000570023 DEPDC4Q8N2C3 294 aa6.27□□□□□ -1.41
VPS39-212ENST00000570023 ETNK1Q9HBU6 452 aa6.27□□□□□ -1.41
VPS39-212ENST00000570023 RAB6BQ9NRW1 208 aa6.27□□□□□ -1.41
VPS39-212ENST00000570023 MAFBQ9Y5Q3 323 aaPredicted RBP6.27□□□□□ -1.41
VPS39-212ENST00000570023 SPATA31C2B4DYI2 1134 aa6.26□□□□□ -1.41
VPS39-212ENST00000570023 H3BM21 787 aa6.26□□□□□ -1.41
VPS39-212ENST00000570023 INHAP05111 366 aa6.26□□□□□ -1.41
VPS39-212ENST00000570023 GTF2IP78347 998 aa6.26□□□□□ -1.41
VPS39-212ENST00000570023 PTSQ03393 145 aa6.26□□□□□ -1.41
VPS39-212ENST00000570023 WDR44Q5JSH3 913 aa6.26□□□□□ -1.41
VPS39-212ENST00000570023 TRIM50Q86XT4 487 aa6.26□□□□□ -1.41
VPS39-212ENST00000570023 SLC4A9Q96Q91 983 aa6.26□□□□□ -1.41
VPS39-212ENST00000570023 FHDC1Q9C0D6 1143 aaPredicted RBP6.26□□□□□ -1.41
VPS39-212ENST00000570023 SENP3-EIF4A1A0A087X0R7 540 aa6.25□□□□□ -1.41
VPS39-212ENST00000570023 SLC35F4A4IF30 521 aa6.25□□□□□ -1.41
VPS39-212ENST00000570023 TMEM229AB2RXF0 380 aa6.25□□□□□ -1.41
VPS39-212ENST00000570023 ZBTB7BO15156 539 aaPredicted RBP6.25□□□□□ -1.41
VPS39-212ENST00000570023 STAU1O95793 577 aaKnown RBP6.25□□□□□ -1.41
VPS39-212ENST00000570023 GDF10P55107 478 aa6.25□□□□□ -1.41
VPS39-212ENST00000570023 PPFIA3O75145 1194 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms