RNA–Protein interactions for RNA: ENST00000568877.5

COMMD4-224, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 770 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-224ENST00000568877 PDE3BQ13370 1112 aa22.33■■□□□ 1.17
COMMD4-224ENST00000568877 WDR43Q15061 677 aaKnown RBP eCLIP22.33■■□□□ 1.17
COMMD4-224ENST00000568877 ZCRB1Q8TBF4 217 aaKnown RBP22.33■■□□□ 1.17
COMMD4-224ENST00000568877 FCHSD2O94868 740 aa22.32■■□□□ 1.16
COMMD4-224ENST00000568877 MIER1Q8N108 512 aa22.32■■□□□ 1.16
COMMD4-224ENST00000568877 RSPH6AQ9H0K4 717 aa22.32■■□□□ 1.16
COMMD4-224ENST00000568877 PLEKHG2Q9H7P9 1386 aa22.32■■□□□ 1.16
COMMD4-224ENST00000568877 TNS2Q63HR2 1409 aa22.31■■□□□ 1.16
COMMD4-224ENST00000568877 LRRC37A3O60309 1634 aa22.31■■□□□ 1.16
COMMD4-224ENST00000568877 KRT27Q7Z3Y8 459 aa22.31■■□□□ 1.16
COMMD4-224ENST00000568877 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.31■■□□□ 1.16
COMMD4-224ENST00000568877 CCER2I3L3R5 266 aa22.3■■□□□ 1.16
COMMD4-224ENST00000568877 SPG7Q9UQ90 795 aa22.3■■□□□ 1.16
COMMD4-224ENST00000568877 PRKAR2BP31323 418 aa22.29■■□□□ 1.16
COMMD4-224ENST00000568877 PLEKHO1Q53GL0 409 aaPredicted RBP22.29■■□□□ 1.16
COMMD4-224ENST00000568877 AMOTQ4VCS5 1084 aa22.28■■□□□ 1.16
COMMD4-224ENST00000568877 DDX54Q8TDD1 881 aaKnown RBP22.28■■□□□ 1.16
COMMD4-224ENST00000568877 PNISRQ8TF01 805 aaKnown RBP22.28■■□□□ 1.16
COMMD4-224ENST00000568877 ADAMTS8Q9UP79 889 aa22.28■■□□□ 1.16
COMMD4-224ENST00000568877 ILDR2Q71H61 639 aa22.27■■□□□ 1.16
COMMD4-224ENST00000568877 MARCH10Q8NA82 808 aaPredicted RBP22.27■■□□□ 1.16
COMMD4-224ENST00000568877 PNNQ9H307 717 aaKnown RBP22.27■■□□□ 1.16
COMMD4-224ENST00000568877 BRWD3Q6RI45 1802 aa22.27■■□□□ 1.15
COMMD4-224ENST00000568877 PCDH11XQ9BZA7 1347 aa22.26■■□□□ 1.15
COMMD4-224ENST00000568877 PCDH11YQ9BZA8 1340 aa22.26■■□□□ 1.15
COMMD4-224ENST00000568877 PKD1L3Q7Z443 1732 aa22.25■■□□□ 1.15
COMMD4-224ENST00000568877 CYP27B1O15528 508 aa22.24■■□□□ 1.15
COMMD4-224ENST00000568877 FAM182BQ5T319 152 aa22.24■■□□□ 1.15
COMMD4-224ENST00000568877 PHACTR3Q96KR7 559 aa22.24■■□□□ 1.15
COMMD4-224ENST00000568877 PLEKHF1Q96S99 279 aa22.24■■□□□ 1.15
COMMD4-224ENST00000568877 NEFMP07197 916 aa22.23■■□□□ 1.15
COMMD4-224ENST00000568877 MTHFSDQ2M296 383 aaKnown RBP22.23■■□□□ 1.15
COMMD4-224ENST00000568877 ZNF530Q6P9A1 599 aaPredicted RBP22.23■■□□□ 1.15
COMMD4-224ENST00000568877 IFNL2Q8IZJ0 200 aa22.22■■□□□ 1.15
COMMD4-224ENST00000568877 SHANK3Q9BYB0 1731 aa22.22■■□□□ 1.15
COMMD4-224ENST00000568877 PHKG2P15735 406 aa22.21■■□□□ 1.15
COMMD4-224ENST00000568877 FAM196AQ6ZSG2 479 aa22.21■■□□□ 1.15
COMMD4-224ENST00000568877 C1orf141Q5JVX7 400 aa22.2■■□□□ 1.14
COMMD4-224ENST00000568877 CCDC146Q8IYE0 955 aa22.2■■□□□ 1.14
COMMD4-224ENST00000568877 GAS2L2Q8NHY3 880 aa22.2■■□□□ 1.14
COMMD4-224ENST00000568877 MAPK8IP3Q9UPT6 1336 aa22.2■■□□□ 1.14
COMMD4-224ENST00000568877 NKX1-1Q15270 411 aaPredicted RBP22.19■■□□□ 1.14
COMMD4-224ENST00000568877 RUNDC1Q96C34 613 aa22.19■■□□□ 1.14
COMMD4-224ENST00000568877 BCL9O00512 1426 aa22.18■■□□□ 1.14
COMMD4-224ENST00000568877 AKAP4Q5JQC9 854 aa22.18■■□□□ 1.14
COMMD4-224ENST00000568877 FAM9BQ8IZU0 186 aa22.18■■□□□ 1.14
COMMD4-224ENST00000568877 HSP90AB1P08238 724 aaKnown RBP22.17■■□□□ 1.14
COMMD4-224ENST00000568877 NFE2L2Q16236 605 aa22.14■■□□□ 1.13
COMMD4-224ENST00000568877 DCAF5Q96JK2 942 aa22.14■■□□□ 1.13
COMMD4-224ENST00000568877 GNAT3A8MTJ3 354 aa22.13■■□□□ 1.13
COMMD4-224ENST00000568877 MAP3K5Q99683 1374 aa22.12■■□□□ 1.13
COMMD4-224ENST00000568877 MPRIPQ6WCQ1 1025 aa22.12■■□□□ 1.13
COMMD4-224ENST00000568877 ACSBG1Q96GR2 724 aa22.12■■□□□ 1.13
COMMD4-224ENST00000568877 TMPOP42166 694 aaKnown RBP22.11■■□□□ 1.13
COMMD4-224ENST00000568877 KDM6AO15550 1401 aaPredicted RBP22.1■■□□□ 1.13
COMMD4-224ENST00000568877 TRIM37O94972 964 aa22.1■■□□□ 1.13
COMMD4-224ENST00000568877 EP400Q96L91 3159 aa22.1■■□□□ 1.13
COMMD4-224ENST00000568877 APAF1O14727 1248 aa22.09■■□□□ 1.13
COMMD4-224ENST00000568877 KCNQ2O43526 872 aa22.09■■□□□ 1.13
COMMD4-224ENST00000568877 PRIM1P49642 420 aaKnown RBP22.09■■□□□ 1.13
COMMD4-224ENST00000568877 RIPK4P57078 832 aa22.09■■□□□ 1.13
COMMD4-224ENST00000568877 LGR6Q9HBX8 967 aa22.09■■□□□ 1.13
COMMD4-224ENST00000568877 ERVV-2B6SEH9 535 aa22.08■■□□□ 1.13
COMMD4-224ENST00000568877 RNMTO43148 476 aaKnown RBP22.08■■□□□ 1.13
COMMD4-224ENST00000568877 HTATSF1O43719 755 aaKnown RBP22.08■■□□□ 1.13
COMMD4-224ENST00000568877 RTF1Q92541 710 aaKnown RBP22.08■■□□□ 1.13
COMMD4-224ENST00000568877 SYTL4Q96C24 671 aaPredicted RBP22.08■■□□□ 1.13
COMMD4-224ENST00000568877 BCL11BQ9C0K0 894 aaPredicted RBP22.08■■□□□ 1.13
COMMD4-224ENST00000568877 RRP7AQ9Y3A4 280 aaKnown RBP22.08■■□□□ 1.13
COMMD4-224ENST00000568877 IL17REQ8NFR9 667 aa22.07■■□□□ 1.12
COMMD4-224ENST00000568877 DOT1LQ8TEK3 1739 aa22.06■■□□□ 1.12
COMMD4-224ENST00000568877 NEUROD2Q15784 382 aa22.06■■□□□ 1.12
COMMD4-224ENST00000568877 PTF1AQ7RTS3 328 aa22.06■■□□□ 1.12
COMMD4-224ENST00000568877 TOGARAM1Q9Y4F4 1720 aa22.06■■□□□ 1.12
COMMD4-224ENST00000568877 CABP4P57796 275 aa22.05■■□□□ 1.12
COMMD4-224ENST00000568877 MCM10Q7L590 875 aa22.05■■□□□ 1.12
COMMD4-224ENST00000568877 SBF2Q86WG5 1849 aa22.05■■□□□ 1.12
COMMD4-224ENST00000568877 NHSQ6T4R5 1651 aa22.04■■□□□ 1.12
COMMD4-224ENST00000568877 LMOD3Q0VAK6 560 aa22.04■■□□□ 1.12
COMMD4-224ENST00000568877 DCTN1Q14203 1278 aa22.04■■□□□ 1.12
COMMD4-224ENST00000568877 CCDC125Q86Z20 511 aa22.04■■□□□ 1.12
COMMD4-224ENST00000568877 UPF1Q92900 1129 aaKnown RBP eCLIP22.04■■□□□ 1.12
COMMD4-224ENST00000568877 TMOD3Q9NYL9 352 aa22.04■■□□□ 1.12
COMMD4-224ENST00000568877 CEMIPQ8WUJ3 1361 aa22.03■■□□□ 1.12
COMMD4-224ENST00000568877 ADAMTS7Q9UKP4 1686 aa22.03■■□□□ 1.12
COMMD4-224ENST00000568877 SF3B2Q13435 895 aaKnown RBP22.02■■□□□ 1.12
COMMD4-224ENST00000568877 NFATC2IPQ8NCF5 419 aa22.02■■□□□ 1.12
COMMD4-224ENST00000568877 PIGBQ92521 554 aa22.02■■□□□ 1.12
COMMD4-224ENST00000568877 SLC52A2Q9HAB3 445 aa22.02■■□□□ 1.12
COMMD4-224ENST00000568877 TRIM35Q9UPQ4 493 aa22.02■■□□□ 1.12
COMMD4-224ENST00000568877 SCN11AQ9UI33 1791 aa22.02■■□□□ 1.11
COMMD4-224ENST00000568877 SENP3-EIF4A1A0A087X0R7 540 aa22.01■■□□□ 1.11
COMMD4-224ENST00000568877 TEFQ10587 303 aa22.01■■□□□ 1.11
COMMD4-224ENST00000568877 DLG5Q8TDM6 1919 aa22■■□□□ 1.11
COMMD4-224ENST00000568877 APBA3O96018 575 aa22■■□□□ 1.11
COMMD4-224ENST00000568877 MRC1P22897 1456 aa22■■□□□ 1.11
COMMD4-224ENST00000568877 NCBP3Q53F19 620 aaKnown RBP21.99■■□□□ 1.11
COMMD4-224ENST00000568877 THUMPD2Q9BTF0 503 aaKnown RBP21.99■■□□□ 1.11
COMMD4-224ENST00000568877 ITGB4P16144 1822 aa21.98■■□□□ 1.11
COMMD4-224ENST00000568877 TNS1Q9HBL0 1735 aaKnown RBP21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms