RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 KIF20BQ96Q89 1820 aa20.63■□□□□ 0.89
CLN3-222ENST00000566083 HSP90AB2PQ58FF8 381 aa20.62■□□□□ 0.89
CLN3-222ENST00000566083 SYTL4Q96C24 671 aaPredicted RBP20.62■□□□□ 0.89
CLN3-222ENST00000566083 NSD3Q9BZ95 1437 aa20.62■□□□□ 0.89
CLN3-222ENST00000566083 PRIM1P49642 420 aaKnown RBP20.61■□□□□ 0.89
CLN3-222ENST00000566083 EIF4G2P78344 907 aaKnown RBP eCLIP20.61■□□□□ 0.89
CLN3-222ENST00000566083 PDGFDQ9GZP0 370 aaPredicted RBP20.61■□□□□ 0.89
CLN3-222ENST00000566083 MEGF6O75095 1541 aa20.6■□□□□ 0.89
CLN3-222ENST00000566083 PTGER2P43116 358 aa20.59■□□□□ 0.89
CLN3-222ENST00000566083 SLC16A10Q8TF71 515 aa20.59■□□□□ 0.89
CLN3-222ENST00000566083 ATF5Q9Y2D1 282 aaPredicted RBP20.59■□□□□ 0.89
CLN3-222ENST00000566083 PCDH11XQ9BZA7 1347 aa20.59■□□□□ 0.89
CLN3-222ENST00000566083 PCDH11YQ9BZA8 1340 aa20.59■□□□□ 0.89
CLN3-222ENST00000566083 CCER1Q8TC90 406 aaPredicted RBP20.58■□□□□ 0.88
CLN3-222ENST00000566083 LRRC4BQ9NT99 713 aa20.58■□□□□ 0.88
CLN3-222ENST00000566083 MYOM1P52179 1685 aa20.57■□□□□ 0.88
CLN3-222ENST00000566083 RGPD2P0DJD1 1756 aa20.57■□□□□ 0.88
CLN3-222ENST00000566083 PAPPAQ13219 1627 aa20.56■□□□□ 0.88
CLN3-222ENST00000566083 USHBP1Q8N6Y0 703 aa20.56■□□□□ 0.88
CLN3-222ENST00000566083 WASHC2AQ641Q2 1341 aa20.56■□□□□ 0.88
CLN3-222ENST00000566083 AKT1S1Q96B36 256 aa20.55■□□□□ 0.88
CLN3-222ENST00000566083 EMILIN1Q9Y6C2 1016 aa20.55■□□□□ 0.88
CLN3-222ENST00000566083 PPM1GO15355 546 aaPredicted RBP20.54■□□□□ 0.88
CLN3-222ENST00000566083 ZNF827Q17R98 1081 aa20.54■□□□□ 0.88
CLN3-222ENST00000566083 POLR3GLQ9BT43 218 aa20.54■□□□□ 0.88
CLN3-222ENST00000566083 TFCP2L1Q9NZI6 479 aa20.54■□□□□ 0.88
CLN3-222ENST00000566083 NSD2O96028 1365 aa20.53■□□□□ 0.88
CLN3-222ENST00000566083 SGIP1Q9BQI5 828 aa20.53■□□□□ 0.88
CLN3-222ENST00000566083 CCNL1Q9UK58 526 aaPredicted RBP20.53■□□□□ 0.88
CLN3-222ENST00000566083 YY1P25490 414 aa20.52■□□□□ 0.87
CLN3-222ENST00000566083 ARXQ96QS3 562 aa20.52■□□□□ 0.87
CLN3-222ENST00000566083 SYT17Q9BSW7 474 aa20.52■□□□□ 0.87
CLN3-222ENST00000566083 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.52■□□□□ 0.87
CLN3-222ENST00000566083 SPG7Q9UQ90 795 aa20.52■□□□□ 0.87
CLN3-222ENST00000566083 DOT1LQ8TEK3 1739 aa20.51■□□□□ 0.87
CLN3-222ENST00000566083 SHANK3Q9BYB0 1731 aa20.51■□□□□ 0.87
CLN3-222ENST00000566083 HSPA5P11021 654 aaKnown RBP20.51■□□□□ 0.87
CLN3-222ENST00000566083 POLD1P28340 1107 aa20.51■□□□□ 0.87
CLN3-222ENST00000566083 SMARCC1Q92922 1105 aaPredicted RBP20.5■□□□□ 0.87
CLN3-222ENST00000566083 FHDC1Q9C0D6 1143 aaPredicted RBP20.5■□□□□ 0.87
CLN3-222ENST00000566083 POLKQ9UBT6 870 aa20.5■□□□□ 0.87
CLN3-222ENST00000566083 NCAPD2Q15021 1401 aa20.49■□□□□ 0.87
CLN3-222ENST00000566083 PLEKHG2Q9H7P9 1386 aa20.49■□□□□ 0.87
CLN3-222ENST00000566083 MAP3K5Q99683 1374 aa20.48■□□□□ 0.87
CLN3-222ENST00000566083 LY75O60449 1722 aa20.48■□□□□ 0.87
CLN3-222ENST00000566083 QSER1Q2KHR3 1735 aa20.48■□□□□ 0.87
CLN3-222ENST00000566083 CYP27B1O15528 508 aa20.48■□□□□ 0.87
CLN3-222ENST00000566083 PNPLA7Q6ZV29 1317 aa20.47■□□□□ 0.87
CLN3-222ENST00000566083 MAP2P11137 1827 aaKnown RBP20.47■□□□□ 0.87
CLN3-222ENST00000566083 NKX1-1Q15270 411 aaPredicted RBP20.47■□□□□ 0.87
CLN3-222ENST00000566083 ANKRD26Q9UPS8 1709 aa20.47■□□□□ 0.87
CLN3-222ENST00000566083 MPRIPQ6WCQ1 1025 aa20.46■□□□□ 0.87
CLN3-222ENST00000566083 FLAD1Q8NFF5 587 aa20.46■□□□□ 0.87
CLN3-222ENST00000566083 EYA1Q99502 592 aa20.46■□□□□ 0.87
CLN3-222ENST00000566083 PANK3Q9H999 370 aa20.46■□□□□ 0.87
CLN3-222ENST00000566083 KCNQ4P56696 695 aa20.44■□□□□ 0.86
CLN3-222ENST00000566083 PALLDQ8WX93 1383 aa20.44■□□□□ 0.86
CLN3-222ENST00000566083 TNNT2P45379 298 aaPredicted RBP20.43■□□□□ 0.86
CLN3-222ENST00000566083 IFNL2Q8IZJ0 200 aa20.43■□□□□ 0.86
CLN3-222ENST00000566083 PKD1L3Q7Z443 1732 aa20.42■□□□□ 0.86
CLN3-222ENST00000566083 KNSTRNQ9Y448 316 aa20.42■□□□□ 0.86
CLN3-222ENST00000566083 EIF4A2Q14240 407 aaKnown RBP20.41■□□□□ 0.86
CLN3-222ENST00000566083 MSH5O43196 834 aa20.4■□□□□ 0.86
CLN3-222ENST00000566083 MORC1Q86VD1 984 aa20.4■□□□□ 0.86
CLN3-222ENST00000566083 PIGBQ92521 554 aa20.39■□□□□ 0.85
CLN3-222ENST00000566083 TMOD3Q9NYL9 352 aa20.39■□□□□ 0.85
CLN3-222ENST00000566083 HSP90AB1P08238 724 aaKnown RBP20.38■□□□□ 0.85
CLN3-222ENST00000566083 PHKG2P15735 406 aa20.38■□□□□ 0.85
CLN3-222ENST00000566083 COL23A1Q86Y22 540 aaPredicted RBP20.37■□□□□ 0.85
CLN3-222ENST00000566083 IGSF1Q8N6C5 1336 aa20.37■□□□□ 0.85
CLN3-222ENST00000566083 COL24A1Q17RW2 1714 aa20.37■□□□□ 0.85
CLN3-222ENST00000566083 AMOTQ4VCS5 1084 aa20.36■□□□□ 0.85
CLN3-222ENST00000566083 AK7Q96M32 723 aa20.36■□□□□ 0.85
CLN3-222ENST00000566083 PLEKHO1Q53GL0 409 aaPredicted RBP20.36■□□□□ 0.85
CLN3-222ENST00000566083 ITGB4P16144 1822 aa20.35■□□□□ 0.85
CLN3-222ENST00000566083 GPR162Q16538 588 aa20.35■□□□□ 0.85
CLN3-222ENST00000566083 KLHL34Q8N239 644 aa20.35■□□□□ 0.85
CLN3-222ENST00000566083 C5P01031 1676 aa20.34■□□□□ 0.85
CLN3-222ENST00000566083 TUBGCP6Q96RT7 1819 aa20.34■□□□□ 0.85
CLN3-222ENST00000566083 LOC102724428A0A0B4J2F2 783 aa20.34■□□□□ 0.85
CLN3-222ENST00000566083 ERVV-2B6SEH9 535 aa20.34■□□□□ 0.85
CLN3-222ENST00000566083 SIK1P57059 783 aa20.34■□□□□ 0.85
CLN3-222ENST00000566083 DCAF5Q96JK2 942 aa20.34■□□□□ 0.85
CLN3-222ENST00000566083 TOGARAM1Q9Y4F4 1720 aa20.32■□□□□ 0.84
CLN3-222ENST00000566083 TAF1LQ8IZX4 1826 aa20.32■□□□□ 0.84
CLN3-222ENST00000566083 SSFA2P28290 1259 aa20.31■□□□□ 0.84
CLN3-222ENST00000566083 CHD4Q14839 1912 aa20.31■□□□□ 0.84
CLN3-222ENST00000566083 ATP6V1AP38606 617 aa20.29■□□□□ 0.84
CLN3-222ENST00000566083 ASAP1Q9ULH1 1129 aa20.29■□□□□ 0.84
CLN3-222ENST00000566083 CD2APQ9Y5K6 639 aa20.29■□□□□ 0.84
CLN3-222ENST00000566083 C4BP0C0L5 1744 aa20.29■□□□□ 0.84
CLN3-222ENST00000566083 GRIN3BO60391 1043 aa20.28■□□□□ 0.84
CLN3-222ENST00000566083 C1orf141Q5JVX7 400 aa20.28■□□□□ 0.84
CLN3-222ENST00000566083 KIF7Q2M1P5 1343 aa20.28■□□□□ 0.84
CLN3-222ENST00000566083 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.27■□□□□ 0.84
CLN3-222ENST00000566083 AMER1Q5JTC6 1135 aaPredicted RBP20.27■□□□□ 0.84
CLN3-222ENST00000566083 ZNF530Q6P9A1 599 aaPredicted RBP20.27■□□□□ 0.84
CLN3-222ENST00000566083 ATG3Q9NT62 314 aa20.27■□□□□ 0.84
CLN3-222ENST00000566083 MSL1Q68DK7 614 aa20.27■□□□□ 0.83
CLN3-222ENST00000566083 MTHFSP49914 203 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms