RNA–Protein interactions for RNA: ENST00000563109.1

RAB40C-207, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 710 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-207ENST00000563109 PLEKHG2Q9H7P9 1386 aa25.08■■□□□ 1.61
RAB40C-207ENST00000563109 TNS2Q63HR2 1409 aa25.08■■□□□ 1.61
RAB40C-207ENST00000563109 BRWD3Q6RI45 1802 aa25.07■■□□□ 1.6
RAB40C-207ENST00000563109 CCER2I3L3R5 266 aa25.06■■□□□ 1.6
RAB40C-207ENST00000563109 DDB1Q16531 1140 aa25.06■■□□□ 1.6
RAB40C-207ENST00000563109 CCDC184Q52MB2 194 aa25.06■■□□□ 1.6
RAB40C-207ENST00000563109 MIER1Q8N108 512 aa25.06■■□□□ 1.6
RAB40C-207ENST00000563109 SHANK3Q9BYB0 1731 aa25.04■■□□□ 1.6
RAB40C-207ENST00000563109 EXOC5O00471 708 aa25.04■■□□□ 1.6
RAB40C-207ENST00000563109 PNNQ9H307 717 aaKnown RBP25.04■■□□□ 1.6
RAB40C-207ENST00000563109 FCHSD2O94868 740 aa25.03■■□□□ 1.6
RAB40C-207ENST00000563109 RSPH6AQ9H0K4 717 aa25.03■■□□□ 1.6
RAB40C-207ENST00000563109 NEFMP07197 916 aa25.02■■□□□ 1.6
RAB40C-207ENST00000563109 PDE3BQ13370 1112 aa25.02■■□□□ 1.6
RAB40C-207ENST00000563109 SPG7Q9UQ90 795 aa25.02■■□□□ 1.6
RAB40C-207ENST00000563109 PRKAR2BP31323 418 aa25.01■■□□□ 1.59
RAB40C-207ENST00000563109 ZCRB1Q8TBF4 217 aaKnown RBP25.01■■□□□ 1.59
RAB40C-207ENST00000563109 AMOTQ4VCS5 1084 aa25■■□□□ 1.59
RAB40C-207ENST00000563109 PLEKHO1Q53GL0 409 aaPredicted RBP25■■□□□ 1.59
RAB40C-207ENST00000563109 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25■■□□□ 1.59
RAB40C-207ENST00000563109 PCDH11XQ9BZA7 1347 aa25■■□□□ 1.59
RAB40C-207ENST00000563109 PCDH11YQ9BZA8 1340 aa25■■□□□ 1.59
RAB40C-207ENST00000563109 KRT27Q7Z3Y8 459 aa24.99■■□□□ 1.59
RAB40C-207ENST00000563109 MAPK8IP3Q9UPT6 1336 aa24.98■■□□□ 1.59
RAB40C-207ENST00000563109 PNISRQ8TF01 805 aaKnown RBP24.97■■□□□ 1.59
RAB40C-207ENST00000563109 ADAMTS8Q9UP79 889 aa24.97■■□□□ 1.59
RAB40C-207ENST00000563109 DDX54Q8TDD1 881 aaKnown RBP24.95■■□□□ 1.58
RAB40C-207ENST00000563109 ZNF530Q6P9A1 599 aaPredicted RBP24.94■■□□□ 1.58
RAB40C-207ENST00000563109 C1orf141Q5JVX7 400 aa24.93■■□□□ 1.58
RAB40C-207ENST00000563109 GAS2L2Q8NHY3 880 aa24.93■■□□□ 1.58
RAB40C-207ENST00000563109 FAM9BQ8IZU0 186 aa24.92■■□□□ 1.58
RAB40C-207ENST00000563109 RUNDC1Q96C34 613 aa24.92■■□□□ 1.58
RAB40C-207ENST00000563109 CCDC146Q8IYE0 955 aa24.91■■□□□ 1.58
RAB40C-207ENST00000563109 IFNL2Q8IZJ0 200 aa24.91■■□□□ 1.58
RAB40C-207ENST00000563109 MARCH10Q8NA82 808 aaPredicted RBP24.91■■□□□ 1.58
RAB40C-207ENST00000563109 PLEKHF1Q96S99 279 aa24.91■■□□□ 1.58
RAB40C-207ENST00000563109 MTHFSDQ2M296 383 aaKnown RBP24.9■■□□□ 1.58
RAB40C-207ENST00000563109 PHACTR3Q96KR7 559 aa24.9■■□□□ 1.58
RAB40C-207ENST00000563109 CYP27B1O15528 508 aa24.89■■□□□ 1.58
RAB40C-207ENST00000563109 HSP90AB1P08238 724 aaKnown RBP24.89■■□□□ 1.58
RAB40C-207ENST00000563109 PHKG2P15735 406 aa24.89■■□□□ 1.58
RAB40C-207ENST00000563109 DOT1LQ8TEK3 1739 aa24.89■■□□□ 1.57
RAB40C-207ENST00000563109 VIRMAQ69YN4 1812 aaKnown RBP24.87■■□□□ 1.57
RAB40C-207ENST00000563109 DLG5Q8TDM6 1919 aa24.87■■□□□ 1.57
RAB40C-207ENST00000563109 AKAP4Q5JQC9 854 aa24.87■■□□□ 1.57
RAB40C-207ENST00000563109 FAM196AQ6ZSG2 479 aa24.87■■□□□ 1.57
RAB40C-207ENST00000563109 MAP3K5Q99683 1374 aa24.87■■□□□ 1.57
RAB40C-207ENST00000563109 FAM182BQ5T319 152 aa24.86■■□□□ 1.57
RAB40C-207ENST00000563109 BCL9O00512 1426 aa24.86■■□□□ 1.57
RAB40C-207ENST00000563109 SBF2Q86WG5 1849 aa24.84■■□□□ 1.57
RAB40C-207ENST00000563109 NFE2L2Q16236 605 aa24.84■■□□□ 1.57
RAB40C-207ENST00000563109 SCN11AQ9UI33 1791 aa24.84■■□□□ 1.57
RAB40C-207ENST00000563109 NHSQ6T4R5 1651 aa24.84■■□□□ 1.57
RAB40C-207ENST00000563109 TOGARAM1Q9Y4F4 1720 aa24.83■■□□□ 1.57
RAB40C-207ENST00000563109 GNAT3A8MTJ3 354 aa24.82■■□□□ 1.56
RAB40C-207ENST00000563109 NKX1-1Q15270 411 aaPredicted RBP24.82■■□□□ 1.56
RAB40C-207ENST00000563109 DCAF5Q96JK2 942 aa24.82■■□□□ 1.56
RAB40C-207ENST00000563109 ILDR2Q71H61 639 aa24.81■■□□□ 1.56
RAB40C-207ENST00000563109 RTF1Q92541 710 aaKnown RBP24.81■■□□□ 1.56
RAB40C-207ENST00000563109 ADAMTS7Q9UKP4 1686 aa24.81■■□□□ 1.56
RAB40C-207ENST00000563109 KDM6AO15550 1401 aaPredicted RBP24.8■■□□□ 1.56
RAB40C-207ENST00000563109 TMPOP42166 694 aaKnown RBP24.8■■□□□ 1.56
RAB40C-207ENST00000563109 ITGB4P16144 1822 aa24.79■■□□□ 1.56
RAB40C-207ENST00000563109 LMOD3Q0VAK6 560 aa24.79■■□□□ 1.56
RAB40C-207ENST00000563109 MPRIPQ6WCQ1 1025 aa24.79■■□□□ 1.56
RAB40C-207ENST00000563109 KAT6BQ8WYB5 2073 aa24.79■■□□□ 1.56
RAB40C-207ENST00000563109 APAF1O14727 1248 aa24.78■■□□□ 1.56
RAB40C-207ENST00000563109 ACSBG1Q96GR2 724 aa24.78■■□□□ 1.56
RAB40C-207ENST00000563109 HTATSF1O43719 755 aaKnown RBP24.77■■□□□ 1.56
RAB40C-207ENST00000563109 RIPK4P57078 832 aa24.77■■□□□ 1.56
RAB40C-207ENST00000563109 RRP7AQ9Y3A4 280 aaKnown RBP24.77■■□□□ 1.56
RAB40C-207ENST00000563109 NEUROD2Q15784 382 aa24.76■■□□□ 1.55
RAB40C-207ENST00000563109 SYTL4Q96C24 671 aaPredicted RBP24.76■■□□□ 1.55
RAB40C-207ENST00000563109 TNS1Q9HBL0 1735 aaKnown RBP24.75■■□□□ 1.55
RAB40C-207ENST00000563109 RNMTO43148 476 aaKnown RBP24.75■■□□□ 1.55
RAB40C-207ENST00000563109 MRC1P22897 1456 aa24.75■■□□□ 1.55
RAB40C-207ENST00000563109 ERVV-2B6SEH9 535 aa24.74■■□□□ 1.55
RAB40C-207ENST00000563109 BTAF1O14981 1849 aa24.74■■□□□ 1.55
RAB40C-207ENST00000563109 TRIM37O94972 964 aa24.73■■□□□ 1.55
RAB40C-207ENST00000563109 PRIM1P49642 420 aaKnown RBP24.73■■□□□ 1.55
RAB40C-207ENST00000563109 TMOD3Q9NYL9 352 aa24.73■■□□□ 1.55
RAB40C-207ENST00000563109 CABP4P57796 275 aa24.72■■□□□ 1.55
RAB40C-207ENST00000563109 LGR6Q9HBX8 967 aa24.72■■□□□ 1.55
RAB40C-207ENST00000563109 CEMIPQ8WUJ3 1361 aa24.71■■□□□ 1.55
RAB40C-207ENST00000563109 TEFQ10587 303 aa24.71■■□□□ 1.55
RAB40C-207ENST00000563109 MCM10Q7L590 875 aa24.71■■□□□ 1.55
RAB40C-207ENST00000563109 BCL11BQ9C0K0 894 aaPredicted RBP24.71■■□□□ 1.55
RAB40C-207ENST00000563109 SIPA1L3O60292 1781 aaPredicted RBP24.71■■□□□ 1.55
RAB40C-207ENST00000563109 SF3B2Q13435 895 aaKnown RBP24.7■■□□□ 1.54
RAB40C-207ENST00000563109 IL17REQ8NFR9 667 aa24.7■■□□□ 1.54
RAB40C-207ENST00000563109 KCNQ2O43526 872 aa24.69■■□□□ 1.54
RAB40C-207ENST00000563109 SLC52A2Q9HAB3 445 aa24.69■■□□□ 1.54
RAB40C-207ENST00000563109 DCTN1Q14203 1278 aa24.68■■□□□ 1.54
RAB40C-207ENST00000563109 NGEFQ8N5V2 710 aa24.68■■□□□ 1.54
RAB40C-207ENST00000563109 NCBP3Q53F19 620 aaKnown RBP24.67■■□□□ 1.54
RAB40C-207ENST00000563109 SENP3-EIF4A1A0A087X0R7 540 aa24.66■■□□□ 1.54
RAB40C-207ENST00000563109 CCDC125Q86Z20 511 aa24.66■■□□□ 1.54
RAB40C-207ENST00000563109 TRIM35Q9UPQ4 493 aa24.66■■□□□ 1.54
RAB40C-207ENST00000563109 PAPPAQ13219 1627 aa24.65■■□□□ 1.54
RAB40C-207ENST00000563109 RGPD3A6NKT7 1758 aaPredicted RBP24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms