RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 USHBP1Q8N6Y0 703 aa12.25□□□□□ -0.45
LDLR-210ENST00000559340 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.25□□□□□ -0.45
LDLR-210ENST00000559340 SPG7Q9UQ90 795 aa12.25□□□□□ -0.45
LDLR-210ENST00000559340 NCAPD2Q15021 1401 aa12.25□□□□□ -0.45
LDLR-210ENST00000559340 HMOX1P09601 288 aa12.24□□□□□ -0.45
LDLR-210ENST00000559340 KDRP35968 1356 aa12.24□□□□□ -0.45
LDLR-210ENST00000559340 FAM98CQ17RN3 349 aaKnown RBP12.24□□□□□ -0.45
LDLR-210ENST00000559340 PNISRQ8TF01 805 aaKnown RBP12.24□□□□□ -0.45
LDLR-210ENST00000559340 GLI3P10071 1580 aa12.23□□□□□ -0.45
LDLR-210ENST00000559340 MAPK8IP3Q9UPT6 1336 aa12.23□□□□□ -0.45
LDLR-210ENST00000559340 PDE3BQ13370 1112 aa12.23□□□□□ -0.45
LDLR-210ENST00000559340 DDB1Q16531 1140 aa12.23□□□□□ -0.45
LDLR-210ENST00000559340 CCDC184Q52MB2 194 aa12.23□□□□□ -0.45
LDLR-210ENST00000559340 ZCRB1Q8TBF4 217 aaKnown RBP12.23□□□□□ -0.45
LDLR-210ENST00000559340 PRKAR2BP31323 418 aa12.22□□□□□ -0.45
LDLR-210ENST00000559340 GAS2L2Q8NHY3 880 aa12.22□□□□□ -0.45
LDLR-210ENST00000559340 RSPH6AQ9H0K4 717 aa12.22□□□□□ -0.45
LDLR-210ENST00000559340 ADAMTS8Q9UP79 889 aa12.22□□□□□ -0.45
LDLR-210ENST00000559340 AEBP1Q8IUX7 1158 aa12.21□□□□□ -0.45
LDLR-210ENST00000559340 SEPT12Q8IYM1 358 aa12.21□□□□□ -0.45
LDLR-210ENST00000559340 FAM9BQ8IZU0 186 aa12.21□□□□□ -0.45
LDLR-210ENST00000559340 RUNDC1Q96C34 613 aa12.21□□□□□ -0.45
LDLR-210ENST00000559340 DISP2A7MBM2 1401 aa12.2□□□□□ -0.46
LDLR-210ENST00000559340 HSP90AB1P08238 724 aaKnown RBP12.2□□□□□ -0.46
LDLR-210ENST00000559340 C1orf141Q5JVX7 400 aa12.2□□□□□ -0.46
LDLR-210ENST00000559340 BRWD3Q6RI45 1802 aa12.2□□□□□ -0.46
LDLR-210ENST00000559340 PKD1L3Q7Z443 1732 aa12.2□□□□□ -0.46
LDLR-210ENST00000559340 OVOS2A0A0G2JMS6 1433 aa12.2□□□□□ -0.46
LDLR-210ENST00000559340 THSD7AQ9UPZ6 1657 aa12.19□□□□□ -0.46
LDLR-210ENST00000559340 PCDH11XQ9BZA7 1347 aa12.19□□□□□ -0.46
LDLR-210ENST00000559340 PCDH11YQ9BZA8 1340 aa12.19□□□□□ -0.46
LDLR-210ENST00000559340 IFNL2Q8IZJ0 200 aa12.19□□□□□ -0.46
LDLR-210ENST00000559340 DLG5Q8TDM6 1919 aa12.19□□□□□ -0.46
LDLR-210ENST00000559340 VIRMAQ69YN4 1812 aaKnown RBP12.18□□□□□ -0.46
LDLR-210ENST00000559340 MEGF6O75095 1541 aa12.18□□□□□ -0.46
LDLR-210ENST00000559340 SF3B2Q13435 895 aaKnown RBP12.18□□□□□ -0.46
LDLR-210ENST00000559340 ZNF530Q6P9A1 599 aaPredicted RBP12.18□□□□□ -0.46
LDLR-210ENST00000559340 NGEFQ8N5V2 710 aa12.18□□□□□ -0.46
LDLR-210ENST00000559340 LMOD3Q0VAK6 560 aa12.17□□□□□ -0.46
LDLR-210ENST00000559340 AKAP4Q5JQC9 854 aa12.17□□□□□ -0.46
LDLR-210ENST00000559340 KRT27Q7Z3Y8 459 aa12.17□□□□□ -0.46
LDLR-210ENST00000559340 DDX54Q8TDD1 881 aaKnown RBP12.17□□□□□ -0.46
LDLR-210ENST00000559340 PLEKHF1Q96S99 279 aa12.17□□□□□ -0.46
LDLR-210ENST00000559340 TNS2Q63HR2 1409 aa12.17□□□□□ -0.46
LDLR-210ENST00000559340 LRRC37A3O60309 1634 aa12.16□□□□□ -0.46
LDLR-210ENST00000559340 HTATSF1O43719 755 aaKnown RBP12.16□□□□□ -0.46
LDLR-210ENST00000559340 NFE2L2Q16236 605 aa12.16□□□□□ -0.46
LDLR-210ENST00000559340 MTHFSDQ2M296 383 aaKnown RBP12.16□□□□□ -0.46
LDLR-210ENST00000559340 RTF1Q92541 710 aaKnown RBP12.16□□□□□ -0.46
LDLR-210ENST00000559340 GNAT3A8MTJ3 354 aa12.15□□□□□ -0.46
LDLR-210ENST00000559340 NCBP3Q53F19 620 aaKnown RBP12.15□□□□□ -0.46
LDLR-210ENST00000559340 FAM196AQ6ZSG2 479 aa12.15□□□□□ -0.46
LDLR-210ENST00000559340 CCDC146Q8IYE0 955 aa12.15□□□□□ -0.46
LDLR-210ENST00000559340 PHACTR3Q96KR7 559 aa12.15□□□□□ -0.46
LDLR-210ENST00000559340 SHANK3Q9BYB0 1731 aa12.14□□□□□ -0.47
LDLR-210ENST00000559340 PHKG2P15735 406 aa12.14□□□□□ -0.47
LDLR-210ENST00000559340 NKX1-1Q15270 411 aaPredicted RBP12.14□□□□□ -0.47
LDLR-210ENST00000559340 SCN11AQ9UI33 1791 aa12.14□□□□□ -0.47
LDLR-210ENST00000559340 APAF1O14727 1248 aa12.13□□□□□ -0.47
LDLR-210ENST00000559340 CYP27B1O15528 508 aa12.13□□□□□ -0.47
LDLR-210ENST00000559340 TMPOP42166 694 aaKnown RBP12.13□□□□□ -0.47
LDLR-210ENST00000559340 RIPK4P57078 832 aa12.13□□□□□ -0.47
LDLR-210ENST00000559340 DEFB132Q7Z7B7 95 aa12.13□□□□□ -0.47
LDLR-210ENST00000559340 MARCH10Q8NA82 808 aaPredicted RBP12.13□□□□□ -0.47
LDLR-210ENST00000559340 DCAF5Q96JK2 942 aa12.13□□□□□ -0.47
LDLR-210ENST00000559340 SBF2Q86WG5 1849 aa12.12□□□□□ -0.47
LDLR-210ENST00000559340 CALD1Q05682 793 aaKnown RBP12.12□□□□□ -0.47
LDLR-210ENST00000559340 MAP3K5Q99683 1374 aa12.12□□□□□ -0.47
LDLR-210ENST00000559340 ITGB4P16144 1822 aa12.11□□□□□ -0.47
LDLR-210ENST00000559340 ERVV-2B6SEH9 535 aa12.11□□□□□ -0.47
LDLR-210ENST00000559340 NEUROD2Q15784 382 aa12.11□□□□□ -0.47
LDLR-210ENST00000559340 BCL9O00512 1426 aa12.11□□□□□ -0.47
LDLR-210ENST00000559340 RNMTO43148 476 aaKnown RBP12.1□□□□□ -0.47
LDLR-210ENST00000559340 BAG6P46379 1132 aa12.1□□□□□ -0.47
LDLR-210ENST00000559340 TEFQ10587 303 aa12.1□□□□□ -0.47
LDLR-210ENST00000559340 MPRIPQ6WCQ1 1025 aa12.1□□□□□ -0.47
LDLR-210ENST00000559340 CABP4P57796 275 aa12.09□□□□□ -0.47
LDLR-210ENST00000559340 CCDC27Q2M243 656 aa12.09□□□□□ -0.47
LDLR-210ENST00000559340 HMGB2P26583 209 aaKnown RBP12.08□□□□□ -0.48
LDLR-210ENST00000559340 TMOD3Q9NYL9 352 aa12.08□□□□□ -0.48
LDLR-210ENST00000559340 RRP7AQ9Y3A4 280 aaKnown RBP12.08□□□□□ -0.48
LDLR-210ENST00000559340 EP400Q96L91 3159 aa12.08□□□□□ -0.48
LDLR-210ENST00000559340 DOT1LQ8TEK3 1739 aa12.07□□□□□ -0.48
LDLR-210ENST00000559340 SYTL4Q96C24 671 aaPredicted RBP12.07□□□□□ -0.48
LDLR-210ENST00000559340 ADAMTS7Q9UKP4 1686 aa12.06□□□□□ -0.48
LDLR-210ENST00000559340 PRIM1P49642 420 aaKnown RBP12.06□□□□□ -0.48
LDLR-210ENST00000559340 TAF7Q15545 349 aaPredicted RBP12.06□□□□□ -0.48
LDLR-210ENST00000559340 WDR63Q8IWG1 891 aa12.06□□□□□ -0.48
LDLR-210ENST00000559340 IL17REQ8NFR9 667 aa12.06□□□□□ -0.48
LDLR-210ENST00000559340 BCL11BQ9C0K0 894 aaPredicted RBP12.06□□□□□ -0.48
LDLR-210ENST00000559340 SLC52A2Q9HAB3 445 aa12.06□□□□□ -0.48
LDLR-210ENST00000559340 LGR6Q9HBX8 967 aa12.06□□□□□ -0.48
LDLR-210ENST00000559340 BABAM1Q9NWV8 329 aa12.06□□□□□ -0.48
LDLR-210ENST00000559340 HNRNPUQ00839 825 aaKnown RBP eCLIP12.05□□□□□ -0.48
LDLR-210ENST00000559340 FAM182BQ5T319 152 aa12.05□□□□□ -0.48
LDLR-210ENST00000559340 MCM10Q7L590 875 aa12.05□□□□□ -0.48
LDLR-210ENST00000559340 SMARCC1Q92922 1105 aaPredicted RBP12.05□□□□□ -0.48
LDLR-210ENST00000559340 ACSBG1Q96GR2 724 aa12.05□□□□□ -0.48
LDLR-210ENST00000559340 TRIM35Q9UPQ4 493 aa12.05□□□□□ -0.48
LDLR-210ENST00000559340 SALL2Q9Y467 1007 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms