RNA–Protein interactions for RNA: ENST00000559108.1

TPM1-217, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-217ENST00000559108 A0A0G2JS52 829 aa14.67□□□□□ -0.06
TPM1-217ENST00000559108 MYT1Q01538 1121 aa14.67□□□□□ -0.06
TPM1-217ENST00000559108 U2SURPO15042 1029 aaKnown RBP14.66□□□□□ -0.06
TPM1-217ENST00000559108 RSPH6AQ9H0K4 717 aa14.66□□□□□ -0.06
TPM1-217ENST00000559108 NHSQ6T4R5 1651 aa14.65□□□□□ -0.06
TPM1-217ENST00000559108 ITGB4P16144 1822 aa14.65□□□□□ -0.06
TPM1-217ENST00000559108 ANP32CO43423 234 aa14.65□□□□□ -0.06
TPM1-217ENST00000559108 DDB1Q16531 1140 aa14.65□□□□□ -0.06
TPM1-217ENST00000559108 KRT27Q7Z3Y8 459 aa14.65□□□□□ -0.06
TPM1-217ENST00000559108 CFAP53Q96M91 514 aa14.65□□□□□ -0.06
TPM1-217ENST00000559108 ADAMTS7Q9UKP4 1686 aa14.65□□□□□ -0.06
TPM1-217ENST00000559108 CYP27B1O15528 508 aa14.64□□□□□ -0.07
TPM1-217ENST00000559108 PTF1AQ7RTS3 328 aa14.64□□□□□ -0.07
TPM1-217ENST00000559108 CDCA7Q9BWT1 371 aaPredicted RBP14.64□□□□□ -0.07
TPM1-217ENST00000559108 SCN11AQ9UI33 1791 aa14.64□□□□□ -0.07
TPM1-217ENST00000559108 TATP17735 454 aaPredicted RBP14.63□□□□□ -0.07
TPM1-217ENST00000559108 DIEXFQ68CQ4 756 aaKnown RBP14.63□□□□□ -0.07
TPM1-217ENST00000559108 RAPGEF4Q8WZA2 1011 aa14.63□□□□□ -0.07
TPM1-217ENST00000559108 PHACTR3Q96KR7 559 aa14.63□□□□□ -0.07
TPM1-217ENST00000559108 BTAF1O14981 1849 aa14.62□□□□□ -0.07
TPM1-217ENST00000559108 ZCRB1Q8TBF4 217 aaKnown RBP14.62□□□□□ -0.07
TPM1-217ENST00000559108 KDM6AO15550 1401 aaPredicted RBP14.61□□□□□ -0.07
TPM1-217ENST00000559108 EXOC5O00471 708 aa14.61□□□□□ -0.07
TPM1-217ENST00000559108 U2AF1L5P0DN76 240 aaPredicted RBP14.61□□□□□ -0.07
TPM1-217ENST00000559108 PRKAR2BP31323 418 aa14.61□□□□□ -0.07
TPM1-217ENST00000559108 U2AF1Q01081 240 aaKnown RBP eCLIP14.61□□□□□ -0.07
TPM1-217ENST00000559108 MIER1Q8N108 512 aa14.6□□□□□ -0.07
TPM1-217ENST00000559108 DDX54Q8TDD1 881 aaKnown RBP14.6□□□□□ -0.07
TPM1-217ENST00000559108 PLEKHF1Q96S99 279 aa14.6□□□□□ -0.07
TPM1-217ENST00000559108 SIPA1L3O60292 1781 aaPredicted RBP14.6□□□□□ -0.07
TPM1-217ENST00000559108 PLEKHG2Q9H7P9 1386 aa14.6□□□□□ -0.07
TPM1-217ENST00000559108 BCL9O00512 1426 aa14.59□□□□□ -0.07
TPM1-217ENST00000559108 PDE3BQ13370 1112 aa14.59□□□□□ -0.07
TPM1-217ENST00000559108 MTHFSDQ2M296 383 aaKnown RBP14.59□□□□□ -0.07
TPM1-217ENST00000559108 PHKG2P15735 406 aa14.58□□□□□ -0.08
TPM1-217ENST00000559108 PNISRQ8TF01 805 aaKnown RBP14.58□□□□□ -0.08
TPM1-217ENST00000559108 ADAMTS8Q9UP79 889 aa14.58□□□□□ -0.08
TPM1-217ENST00000559108 PCDH11XQ9BZA7 1347 aa14.58□□□□□ -0.08
TPM1-217ENST00000559108 PCDH11YQ9BZA8 1340 aa14.58□□□□□ -0.08
TPM1-217ENST00000559108 KCNQ2O43526 872 aa14.57□□□□□ -0.08
TPM1-217ENST00000559108 CCDC146Q8IYE0 955 aa14.57□□□□□ -0.08
TPM1-217ENST00000559108 MRS2Q9HD23 443 aa14.57□□□□□ -0.08
TPM1-217ENST00000559108 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.57□□□□□ -0.083e-8■■■■■ 31
TPM1-217ENST00000559108 NUDCQ9Y266 331 aa14.57□□□□□ -0.08
TPM1-217ENST00000559108 KAT6BQ8WYB5 2073 aa14.57□□□□□ -0.08
TPM1-217ENST00000559108 ZNF530Q6P9A1 599 aaPredicted RBP14.56□□□□□ -0.08
TPM1-217ENST00000559108 UPF1Q92900 1129 aaKnown RBP eCLIP14.56□□□□□ -0.08
TPM1-217ENST00000559108 ACSBG1Q96GR2 724 aa14.56□□□□□ -0.08
TPM1-217ENST00000559108 PAPPAQ13219 1627 aa14.55□□□□□ -0.08
TPM1-217ENST00000559108 FCHSD2O94868 740 aa14.55□□□□□ -0.08
TPM1-217ENST00000559108 NKX1-1Q15270 411 aaPredicted RBP14.55□□□□□ -0.08
TPM1-217ENST00000559108 SPG7Q9UQ90 795 aa14.55□□□□□ -0.08
TPM1-217ENST00000559108 MRC1P22897 1456 aa14.55□□□□□ -0.08
TPM1-217ENST00000559108 SENP3-EIF4A1A0A087X0R7 540 aa14.54□□□□□ -0.08
TPM1-217ENST00000559108 TRIM37O94972 964 aa14.54□□□□□ -0.08
TPM1-217ENST00000559108 PLEKHO1Q53GL0 409 aaPredicted RBP14.54□□□□□ -0.08
TPM1-217ENST00000559108 RREB1Q92766 1687 aa14.54□□□□□ -0.08
TPM1-217ENST00000559108 LY75O60449 1722 aa14.54□□□□□ -0.08
TPM1-217ENST00000559108 RGPD3A6NKT7 1758 aaPredicted RBP14.53□□□□□ -0.08
TPM1-217ENST00000559108 RGPD4Q7Z3J3 1758 aa14.53□□□□□ -0.08
TPM1-217ENST00000559108 MPRIPQ6WCQ1 1025 aa14.53□□□□□ -0.08
TPM1-217ENST00000559108 FAM196AQ6ZSG2 479 aa14.53□□□□□ -0.08
TPM1-217ENST00000559108 LGR6Q9HBX8 967 aa14.53□□□□□ -0.08
TPM1-217ENST00000559108 AMOTQ4VCS5 1084 aa14.52□□□□□ -0.09
TPM1-217ENST00000559108 IFNL2Q8IZJ0 200 aa14.52□□□□□ -0.09
TPM1-217ENST00000559108 NUP188Q5SRE5 1749 aa14.52□□□□□ -0.09
TPM1-217ENST00000559108 MAP3K5Q99683 1374 aa14.51□□□□□ -0.09
TPM1-217ENST00000559108 PRIM1P49642 420 aaKnown RBP14.51□□□□□ -0.09
TPM1-217ENST00000559108 WDR43Q15061 677 aaKnown RBP eCLIP14.51□□□□□ -0.09
TPM1-217ENST00000559108 UBR2Q8IWV8 1755 aa14.5□□□□□ -0.09
TPM1-217ENST00000559108 IL17REQ8NFR9 667 aa14.5□□□□□ -0.09
TPM1-217ENST00000559108 RRP7AQ9Y3A4 280 aaKnown RBP14.5□□□□□ -0.09
TPM1-217ENST00000559108 CCER2I3L3R5 266 aa14.49□□□□□ -0.09
TPM1-217ENST00000559108 SOCS7O14512 581 aa14.49□□□□□ -0.09
TPM1-217ENST00000559108 DCTN1Q14203 1278 aa14.49□□□□□ -0.09
TPM1-217ENST00000559108 AKAP4Q5JQC9 854 aa14.49□□□□□ -0.09
TPM1-217ENST00000559108 DEFB132Q7Z7B7 95 aa14.49□□□□□ -0.09
TPM1-217ENST00000559108 KDM3BQ7LBC6 1761 aa14.49□□□□□ -0.09
TPM1-217ENST00000559108 CEMIPQ8WUJ3 1361 aa14.48□□□□□ -0.09
TPM1-217ENST00000559108 TAF1LQ8IZX4 1826 aa14.48□□□□□ -0.09
TPM1-217ENST00000559108 RNMTO43148 476 aaKnown RBP14.48□□□□□ -0.09
TPM1-217ENST00000559108 NFE2L2Q16236 605 aa14.48□□□□□ -0.09
TPM1-217ENST00000559108 RUNDC1Q96C34 613 aa14.48□□□□□ -0.09
TPM1-217ENST00000559108 THUMPD2Q9BTF0 503 aaKnown RBP14.48□□□□□ -0.09
TPM1-217ENST00000559108 BCL11BQ9C0K0 894 aaPredicted RBP14.48□□□□□ -0.09
TPM1-217ENST00000559108 TJP1Q07157 1748 aa14.47□□□□□ -0.09
TPM1-217ENST00000559108 TMPOP42166 694 aaKnown RBP14.47□□□□□ -0.09
TPM1-217ENST00000559108 C1orf141Q5JVX7 400 aa14.47□□□□□ -0.09
TPM1-217ENST00000559108 MCM10Q7L590 875 aa14.47□□□□□ -0.09
TPM1-217ENST00000559108 FAM9BQ8IZU0 186 aa14.47□□□□□ -0.09
TPM1-217ENST00000559108 GAS2L2Q8NHY3 880 aa14.47□□□□□ -0.09
TPM1-217ENST00000559108 PIGBQ92521 554 aa14.47□□□□□ -0.09
TPM1-217ENST00000559108 DCAF5Q96JK2 942 aa14.47□□□□□ -0.09
TPM1-217ENST00000559108 KCPQ6ZWJ8 1503 aa14.46□□□□□ -0.09
TPM1-217ENST00000559108 GNAT3A8MTJ3 354 aa14.46□□□□□ -0.09
TPM1-217ENST00000559108 APAF1O14727 1248 aa14.46□□□□□ -0.09
TPM1-217ENST00000559108 SYTL4Q96C24 671 aaPredicted RBP14.46□□□□□ -0.09
TPM1-217ENST00000559108 TRIM35Q9UPQ4 493 aa14.46□□□□□ -0.09
TPM1-217ENST00000559108 TUBGCP6Q96RT7 1819 aa14.45□□□□□ -0.1
TPM1-217ENST00000559108 COL5A3P25940 1745 aaPredicted RBP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 483.2 ms