RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 TTC21BQ7Z4L5 1316 aa12.64□□□□□ -0.39
ACTN1-216ENST00000556083 MAGI1Q96QZ7 1491 aaPredicted RBP12.64□□□□□ -0.39
ACTN1-216ENST00000556083 K7ELQ4 463 aaPredicted RBP12.64□□□□□ -0.39
ACTN1-216ENST00000556083 ZFYVE27Q5T4F4 411 aa12.64□□□□□ -0.39
ACTN1-216ENST00000556083 CEP57L1Q8IYX8 460 aa12.64□□□□□ -0.39
ACTN1-216ENST00000556083 CUL7Q14999 1698 aa12.64□□□□□ -0.39
ACTN1-216ENST00000556083 GOLGA6L10A6NI86 522 aa12.64□□□□□ -0.39
ACTN1-216ENST00000556083 TRAK2O60296 914 aa12.64□□□□□ -0.39
ACTN1-216ENST00000556083 GOLGA6L7A0A1B0GV03 622 aa12.63□□□□□ -0.39
ACTN1-216ENST00000556083 EIF3JO75822 258 aaKnown RBP12.63□□□□□ -0.39
ACTN1-216ENST00000556083 RAB34Q9BZG1 259 aa12.63□□□□□ -0.39
ACTN1-216ENST00000556083 FGFR1OPO95684 399 aaKnown RBP12.63□□□□□ -0.39
ACTN1-216ENST00000556083 IMMTQ16891 758 aaKnown RBP12.63□□□□□ -0.39
ACTN1-216ENST00000556083 SH2B1Q9NRF2 756 aaPredicted RBP12.63□□□□□ -0.39
ACTN1-216ENST00000556083 IFIT1P09914 478 aaKnown RBP12.62□□□□□ -0.39
ACTN1-216ENST00000556083 PDILTQ8N807 584 aa12.62□□□□□ -0.39
ACTN1-216ENST00000556083 RNF41Q9H4P4 317 aaPredicted RBP12.62□□□□□ -0.39
ACTN1-216ENST00000556083 SNAPC4Q5SXM2 1469 aa12.62□□□□□ -0.39
ACTN1-216ENST00000556083 PDCL2Q8N4E4 241 aa12.62□□□□□ -0.39
ACTN1-216ENST00000556083 FOXD4L6Q3SYB3 417 aaPredicted RBP12.62□□□□□ -0.39
ACTN1-216ENST00000556083 FOXD4L3Q6VB84 417 aaPredicted RBP12.62□□□□□ -0.39
ACTN1-216ENST00000556083 CHD1LQ86WJ1 897 aa12.62□□□□□ -0.39
ACTN1-216ENST00000556083 EHMT1Q9H9B1 1298 aa12.62□□□□□ -0.39
ACTN1-216ENST00000556083 NOB1Q9ULX3 412 aaKnown RBP12.62□□□□□ -0.39
ACTN1-216ENST00000556083 PDCL3Q9H2J4 239 aa12.62□□□□□ -0.39
ACTN1-216ENST00000556083 BTBD11A6QL63 1104 aa12.61□□□□□ -0.39
ACTN1-216ENST00000556083 GBP3Q9H0R5 595 aa12.61□□□□□ -0.39
ACTN1-216ENST00000556083 FYB1O15117 783 aa12.61□□□□□ -0.39
ACTN1-216ENST00000556083 NFKBIBQ15653 356 aa12.61□□□□□ -0.39
ACTN1-216ENST00000556083 CAVIN2O95810 425 aa12.61□□□□□ -0.39
ACTN1-216ENST00000556083 EZRP15311 586 aaKnown RBP12.61□□□□□ -0.39
ACTN1-216ENST00000556083 TNMDQ9H2S6 317 aa12.61□□□□□ -0.39
ACTN1-216ENST00000556083 LARP1BQ659C4 914 aaKnown RBP12.6□□□□□ -0.39
ACTN1-216ENST00000556083 CAVIN4Q5BKX8 364 aa12.6□□□□□ -0.39
ACTN1-216ENST00000556083 SLC12A5Q9H2X9 1139 aa12.6□□□□□ -0.39
ACTN1-216ENST00000556083 IQGAP2Q13576 1575 aa12.6□□□□□ -0.39
ACTN1-216ENST00000556083 CTAGE5O15320 804 aa12.6□□□□□ -0.39
ACTN1-216ENST00000556083 CALRP27797 417 aaKnown RBP12.6□□□□□ -0.39
ACTN1-216ENST00000556083 SERPINC1P01008 464 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 SCAND2PQ9GZW5 306 aaPredicted RBP12.59□□□□□ -0.39
ACTN1-216ENST00000556083 PTPRCP08575 1304 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 FAM135AQ9P2D6 1515 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 SRGAP3O43295 1099 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 MCM3P25205 808 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 NUDT16Q96DE0 195 aaKnown RBP12.59□□□□□ -0.39
ACTN1-216ENST00000556083 DEF6Q9H4E7 631 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 TDO2P48775 406 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 CCDC178Q5BJE1 867 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 HYPKQ9NX55 129 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 IL16Q14005 1332 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 LDHCP07864 332 aa12.59□□□□□ -0.39
ACTN1-216ENST00000556083 ME1P48163 572 aa12.58□□□□□ -0.4
ACTN1-216ENST00000556083 ZNF397Q8NF99 534 aaPredicted RBP12.58□□□□□ -0.4
ACTN1-216ENST00000556083 STRN4Q9NRL3 753 aa12.58□□□□□ -0.4
ACTN1-216ENST00000556083 PDRG1Q9NUG6 133 aa12.58□□□□□ -0.4
ACTN1-216ENST00000556083 NCOA1Q15788 1441 aa12.58□□□□□ -0.4
ACTN1-216ENST00000556083 A0A087WZG4 1122 aa12.58□□□□□ -0.4
ACTN1-216ENST00000556083 CCDC12Q8WUD4 166 aaPredicted RBP12.58□□□□□ -0.4
ACTN1-216ENST00000556083 TAF7Q15545 349 aaPredicted RBP12.58□□□□□ -0.4
ACTN1-216ENST00000556083 JAKMIP3Q5VZ66 844 aa12.58□□□□□ -0.4
ACTN1-216ENST00000556083 AACSQ86V21 672 aa12.58□□□□□ -0.4
ACTN1-216ENST00000556083 CD109Q6YHK3 1445 aa12.58□□□□□ -0.4
ACTN1-216ENST00000556083 CCDC181Q5TID7 509 aa12.58□□□□□ -0.4
ACTN1-216ENST00000556083 FMNL2Q96PY5 1086 aa12.58□□□□□ -0.4
ACTN1-216ENST00000556083 PUS7Q96PZ0 661 aaKnown RBP12.58□□□□□ -0.4
ACTN1-216ENST00000556083 VPS36Q86VN1 386 aa12.57□□□□□ -0.4
ACTN1-216ENST00000556083 AIDAQ96BJ3 306 aa12.57□□□□□ -0.4
ACTN1-216ENST00000556083 TTF1Q15361 905 aaPredicted RBP12.57□□□□□ -0.4
ACTN1-216ENST00000556083 LEKR1Q6ZMV7 388 aa12.57□□□□□ -0.4
ACTN1-216ENST00000556083 LRRC27Q9C0I9 530 aa12.57□□□□□ -0.4
ACTN1-216ENST00000556083 KIF14Q15058 1648 aa12.57□□□□□ -0.4
ACTN1-216ENST00000556083 TMPOP42166 694 aaKnown RBP12.57□□□□□ -0.4
ACTN1-216ENST00000556083 PPP4R3AQ6IN85 833 aa12.57□□□□□ -0.4
ACTN1-216ENST00000556083 GTPBP4Q9BZE4 634 aaKnown RBP12.57□□□□□ -0.4
ACTN1-216ENST00000556083 MAP3K12Q12852 859 aa12.56□□□□□ -0.4
ACTN1-216ENST00000556083 LRP2BPQ9P2M1 347 aa12.56□□□□□ -0.4
ACTN1-216ENST00000556083 PAF1Q8N7H5 531 aa12.56□□□□□ -0.4
ACTN1-216ENST00000556083 SPATA32Q96LK8 384 aa12.56□□□□□ -0.4
ACTN1-216ENST00000556083 SEC63Q9UGP8 760 aaKnown RBP12.56□□□□□ -0.4
ACTN1-216ENST00000556083 NEMFO60524 1076 aa12.56□□□□□ -0.4
ACTN1-216ENST00000556083 USP8P40818 1118 aa12.56□□□□□ -0.4
ACTN1-216ENST00000556083 NUTM2GQ5VZR2 741 aa12.56□□□□□ -0.4
ACTN1-216ENST00000556083 H0YHG0 523 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 SLC4A3P48751 1232 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 SLFN5Q08AF3 891 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 PHF23Q9BUL5 403 aaPredicted RBP12.55□□□□□ -0.4
ACTN1-216ENST00000556083 NUP62CLQ9H1M0 184 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 DBF4Q9UBU7 674 aaPredicted RBP12.55□□□□□ -0.4
ACTN1-216ENST00000556083 SYNJ1O43426 1573 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 MPHOSPH10O00566 681 aaKnown RBP12.55□□□□□ -0.4
ACTN1-216ENST00000556083 SEPT7Q16181 437 aaKnown RBP12.55□□□□□ -0.4
ACTN1-216ENST00000556083 TMOD3Q9NYL9 352 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 PRPF40AO75400 957 aaKnown RBP12.55□□□□□ -0.4
ACTN1-216ENST00000556083 IQCA1Q86XH1 822 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 CCDC83Q8IWF9 413 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 RAI14Q9P0K7 980 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 NSD3Q9BZ95 1437 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 FIBPO43427 364 aa12.55□□□□□ -0.4
ACTN1-216ENST00000556083 TAF4BQ92750 862 aa12.54□□□□□ -0.4
ACTN1-216ENST00000556083 BACH2Q9BYV9 841 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms