RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 C1orf167Q5SNV9 1468 aa9.53□□□□□ -0.88
SLIRP-204ENST00000555890 CCDC144AA2RUR9 1427 aa9.52□□□□□ -0.89
SLIRP-204ENST00000555890 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.52□□□□□ -0.89
SLIRP-204ENST00000555890 ORAI2Q96SN7 254 aa9.52□□□□□ -0.89
SLIRP-204ENST00000555890 NRXN3Q9Y4C0 1643 aa9.52□□□□□ -0.89
SLIRP-204ENST00000555890 NEXMIFQ5QGS0 1516 aa9.51□□□□□ -0.89
SLIRP-204ENST00000555890 PPP1R37O75864 691 aa9.51□□□□□ -0.89
SLIRP-204ENST00000555890 FXR1P51114 621 aaKnown RBP eCLIP9.51□□□□□ -0.89
SLIRP-204ENST00000555890 ATN1P54259 1190 aaPredicted RBP9.51□□□□□ -0.89
SLIRP-204ENST00000555890 EIF4G2P78344 907 aaKnown RBP eCLIP9.51□□□□□ -0.89
SLIRP-204ENST00000555890 MARF1Q9Y4F3 1742 aaKnown RBP9.51□□□□□ -0.89
SLIRP-204ENST00000555890 PLSCR1O15162 318 aa9.5□□□□□ -0.89
SLIRP-204ENST00000555890 SOX12O15370 315 aa9.5□□□□□ -0.89
SLIRP-204ENST00000555890 ZMYND10O75800 440 aa9.5□□□□□ -0.89
SLIRP-204ENST00000555890 POLD1P28340 1107 aa9.5□□□□□ -0.89
SLIRP-204ENST00000555890 SLC15A2Q16348 729 aa9.5□□□□□ -0.89
SLIRP-204ENST00000555890 FBXO22Q8NEZ5 403 aa9.5□□□□□ -0.89
SLIRP-204ENST00000555890 SNX27Q96L92 541 aa9.5□□□□□ -0.89
SLIRP-204ENST00000555890 E9PCH4 1651 aa9.5□□□□□ -0.89
SLIRP-204ENST00000555890 METP08581 1390 aa9.5□□□□□ -0.89
SLIRP-204ENST00000555890 ADGRL3Q9HAR2 1447 aa9.49□□□□□ -0.89
SLIRP-204ENST00000555890 NALCNQ8IZF0 1738 aa9.49□□□□□ -0.89
SLIRP-204ENST00000555890 SMC1BQ8NDV3 1235 aa9.49□□□□□ -0.89
SLIRP-204ENST00000555890 CCDC61Q9Y6R9 512 aa9.49□□□□□ -0.89
SLIRP-204ENST00000555890 HSPA5P11021 654 aaKnown RBP9.47□□□□□ -0.89
SLIRP-204ENST00000555890 DCAF11Q8TEB1 546 aa9.47□□□□□ -0.89
SLIRP-204ENST00000555890 HSPA8P11142 646 aaKnown RBP9.46□□□□□ -0.9
SLIRP-204ENST00000555890 DDX10Q13206 875 aaKnown RBP9.46□□□□□ -0.9
SLIRP-204ENST00000555890 ZNF326Q5BKZ1 582 aaKnown RBP9.46□□□□□ -0.9
SLIRP-204ENST00000555890 EFCAB3Q8N7B9 438 aa9.46□□□□□ -0.9
SLIRP-204ENST00000555890 HIRIP3Q9BW71 556 aaPredicted RBP9.46□□□□□ -0.9
SLIRP-204ENST00000555890 TULP4Q9NRJ4 1543 aa9.46□□□□□ -0.9
SLIRP-204ENST00000555890 PDE4AP27815 886 aa9.45□□□□□ -0.9
SLIRP-204ENST00000555890 WBP1LQ9NX94 342 aa9.45□□□□□ -0.9
SLIRP-204ENST00000555890 ARIH1Q9Y4X5 557 aaPredicted RBP9.45□□□□□ -0.9
SLIRP-204ENST00000555890 PXDNQ92626 1479 aa9.45□□□□□ -0.9
SLIRP-204ENST00000555890 PDE3BQ13370 1112 aa9.44□□□□□ -0.9
SLIRP-204ENST00000555890 BARGINQ6ZT62 677 aa9.44□□□□□ -0.9
SLIRP-204ENST00000555890 STAC3Q96MF2 364 aa9.44□□□□□ -0.9
SLIRP-204ENST00000555890 LARP6Q9BRS8 491 aaKnown RBP9.44□□□□□ -0.9
SLIRP-204ENST00000555890 MKRN1Q9UHC7 482 aaKnown RBP9.44□□□□□ -0.9
SLIRP-204ENST00000555890 PHF8Q9UPP1 1060 aa9.44□□□□□ -0.9
SLIRP-204ENST00000555890 USP32Q8NFA0 1604 aa9.44□□□□□ -0.9
SLIRP-204ENST00000555890 ARHGEF28Q8N1W1 1705 aaKnown RBP9.44□□□□□ -0.9
SLIRP-204ENST00000555890 KIF1BO60333 1816 aa9.44□□□□□ -0.9
SLIRP-204ENST00000555890 PRAG1Q86YV5 1406 aa9.43□□□□□ -0.9
SLIRP-204ENST00000555890 NPHP3Q7Z494 1330 aa9.43□□□□□ -0.9
SLIRP-204ENST00000555890 SEC24BO95487 1268 aa9.43□□□□□ -0.9
SLIRP-204ENST00000555890 RGL3Q3MIN7 710 aa9.43□□□□□ -0.9
SLIRP-204ENST00000555890 CABP2Q9NPB3 220 aa9.43□□□□□ -0.9
SLIRP-204ENST00000555890 SPATA31A5Q5VU36 1347 aa9.42□□□□□ -0.9
SLIRP-204ENST00000555890 SPATA31A7Q8IWB4 1347 aa9.42□□□□□ -0.9
SLIRP-204ENST00000555890 POTEFA5A3E0 1075 aa9.42□□□□□ -0.9
SLIRP-204ENST00000555890 CENPBP07199 599 aaPredicted RBP9.42□□□□□ -0.9
SLIRP-204ENST00000555890 MMRN1Q13201 1228 aa9.42□□□□□ -0.9
SLIRP-204ENST00000555890 MFSD10Q14728 455 aa9.42□□□□□ -0.9
SLIRP-204ENST00000555890 IFNL1Q8IU54 200 aa9.42□□□□□ -0.9
SLIRP-204ENST00000555890 NBPF15Q8N660 670 aa9.42□□□□□ -0.9
SLIRP-204ENST00000555890 PMFBP1Q8TBY8 1022 aa9.42□□□□□ -0.9
SLIRP-204ENST00000555890 TRPM1Q7Z4N2 1603 aa9.42□□□□□ -0.9
SLIRP-204ENST00000555890 ROBO2Q9HCK4 1378 aa9.41□□□□□ -0.9
SLIRP-204ENST00000555890 CARD11Q9BXL7 1154 aa9.41□□□□□ -0.9
SLIRP-204ENST00000555890 CLTCL1P53675 1640 aa9.41□□□□□ -0.9
SLIRP-204ENST00000555890 SPATA31E1Q6ZUB1 1445 aa9.4□□□□□ -0.9
SLIRP-204ENST00000555890 USP47Q96K76 1375 aa9.4□□□□□ -0.9
SLIRP-204ENST00000555890 C11orf95C9JLR9 678 aaPredicted RBP9.4□□□□□ -0.9
SLIRP-204ENST00000555890 ANP32CO43423 234 aa9.4□□□□□ -0.9
SLIRP-204ENST00000555890 XPCQ01831 940 aaPredicted RBP9.4□□□□□ -0.9
SLIRP-204ENST00000555890 AK7Q96M32 723 aa9.4□□□□□ -0.9
SLIRP-204ENST00000555890 MCOLN1Q9GZU1 580 aa9.39□□□□□ -0.91
SLIRP-204ENST00000555890 PRDM6Q9NQX0 595 aa9.39□□□□□ -0.91
SLIRP-204ENST00000555890 BMP2KQ9NSY1 1161 aaPredicted RBP9.39□□□□□ -0.91
SLIRP-204ENST00000555890 ROCK2O75116 1388 aaKnown RBP9.38□□□□□ -0.91
SLIRP-204ENST00000555890 CCDC7Q96M83 1385 aa9.38□□□□□ -0.91
SLIRP-204ENST00000555890 WASHC2AQ641Q2 1341 aa9.38□□□□□ -0.91
SLIRP-204ENST00000555890 FOXO3O43524 673 aa9.38□□□□□ -0.91
SLIRP-204ENST00000555890 TIE1P35590 1138 aa9.38□□□□□ -0.91
SLIRP-204ENST00000555890 SPNS2Q8IVW8 549 aa9.38□□□□□ -0.91
SLIRP-204ENST00000555890 SLC16A10Q8TF71 515 aa9.38□□□□□ -0.91
SLIRP-204ENST00000555890 DDX27Q96GQ7 796 aaKnown RBP9.38□□□□□ -0.91
SLIRP-204ENST00000555890 CRISPLD2Q9H0B8 497 aa9.38□□□□□ -0.91
SLIRP-204ENST00000555890 SPATA31A3Q5VYP0 1347 aa9.37□□□□□ -0.91
SLIRP-204ENST00000555890 NWD2Q9ULI1 1742 aa9.37□□□□□ -0.91
SLIRP-204ENST00000555890 ST18O60284 1047 aa9.37□□□□□ -0.91
SLIRP-204ENST00000555890 PLA2G5P39877 138 aa9.37□□□□□ -0.91
SLIRP-204ENST00000555890 BTG4Q9NY30 223 aa9.37□□□□□ -0.91
SLIRP-204ENST00000555890 THSD7AQ9UPZ6 1657 aa9.36□□□□□ -0.91
SLIRP-204ENST00000555890 SOX10P56693 466 aa9.36□□□□□ -0.91
SLIRP-204ENST00000555890 CAMK2BQ13554 666 aa9.36□□□□□ -0.91
SLIRP-204ENST00000555890 ESCO1Q5FWF5 840 aa9.36□□□□□ -0.91
SLIRP-204ENST00000555890 KIF12Q96FN5 646 aa9.36□□□□□ -0.91
SLIRP-204ENST00000555890 CCER2I3L3R5 266 aa9.35□□□□□ -0.91
SLIRP-204ENST00000555890 MAP3K13O43283 966 aa9.35□□□□□ -0.91
SLIRP-204ENST00000555890 COL9A1P20849 921 aa9.35□□□□□ -0.91
SLIRP-204ENST00000555890 C10orf71Q711Q0 1435 aa9.35□□□□□ -0.91
SLIRP-204ENST00000555890 SLAIN1Q8ND83 568 aa9.35□□□□□ -0.91
SLIRP-204ENST00000555890 FAM122AQ96E09 287 aa9.35□□□□□ -0.91
SLIRP-204ENST00000555890 PLCH1Q4KWH8 1693 aa9.35□□□□□ -0.91
SLIRP-204ENST00000555890 GPRASP1Q5JY77 1395 aa9.35□□□□□ -0.91
SLIRP-204ENST00000555890 KIF7Q2M1P5 1343 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms