RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 HSP90AB2PQ58FF8 381 aa17.63■□□□□ 0.41
LINC00643-202ENST00000553426 CARD14Q9BXL6 1004 aa17.63■□□□□ 0.41
LINC00643-202ENST00000553426 INSRP06213 1382 aa17.63■□□□□ 0.41
LINC00643-202ENST00000553426 KIF20BQ96Q89 1820 aa17.63■□□□□ 0.41
LINC00643-202ENST00000553426 TATP17735 454 aaPredicted RBP17.62■□□□□ 0.41
LINC00643-202ENST00000553426 EIF4G2P78344 907 aaKnown RBP eCLIP17.62■□□□□ 0.41
LINC00643-202ENST00000553426 SLC27A3Q5K4L6 730 aa17.62■□□□□ 0.41
LINC00643-202ENST00000553426 PPM1GO15355 546 aaPredicted RBP17.61■□□□□ 0.41
LINC00643-202ENST00000553426 PRIM1P49642 420 aaKnown RBP17.61■□□□□ 0.41
LINC00643-202ENST00000553426 USHBP1Q8N6Y0 703 aa17.61■□□□□ 0.41
LINC00643-202ENST00000553426 ATF5Q9Y2D1 282 aaPredicted RBP17.61■□□□□ 0.41
LINC00643-202ENST00000553426 BTAF1O14981 1849 aa17.61■□□□□ 0.41
LINC00643-202ENST00000553426 MTFR1LQ9H019 292 aa17.6■□□□□ 0.41
LINC00643-202ENST00000553426 MEGF6O75095 1541 aa17.6■□□□□ 0.41
LINC00643-202ENST00000553426 EMILIN1Q9Y6C2 1016 aa17.59■□□□□ 0.41
LINC00643-202ENST00000553426 MYOM1P52179 1685 aa17.58■□□□□ 0.41
LINC00643-202ENST00000553426 PCDH11XQ9BZA7 1347 aa17.58■□□□□ 0.4
LINC00643-202ENST00000553426 PCDH11YQ9BZA8 1340 aa17.58■□□□□ 0.4
LINC00643-202ENST00000553426 RGPD2P0DJD1 1756 aa17.58■□□□□ 0.4
LINC00643-202ENST00000553426 HMGB2P26583 209 aaKnown RBP17.57■□□□□ 0.4
LINC00643-202ENST00000553426 LRRC4BQ9NT99 713 aa17.57■□□□□ 0.4
LINC00643-202ENST00000553426 PTGER2P43116 358 aa17.56■□□□□ 0.4
LINC00643-202ENST00000553426 HSPA5P11021 654 aaKnown RBP17.55■□□□□ 0.4
LINC00643-202ENST00000553426 ZNF827Q17R98 1081 aa17.55■□□□□ 0.4
LINC00643-202ENST00000553426 ZNF784Q8NCA9 323 aaPredicted RBP17.55■□□□□ 0.4
LINC00643-202ENST00000553426 TFCP2L1Q9NZI6 479 aa17.55■□□□□ 0.4
LINC00643-202ENST00000553426 WASHC2AQ641Q2 1341 aa17.54■□□□□ 0.4
LINC00643-202ENST00000553426 CCNL1Q9UK58 526 aaPredicted RBP17.54■□□□□ 0.4
LINC00643-202ENST00000553426 DOT1LQ8TEK3 1739 aa17.53■□□□□ 0.4
LINC00643-202ENST00000553426 SLC16A10Q8TF71 515 aa17.53■□□□□ 0.4
LINC00643-202ENST00000553426 PAPPAQ13219 1627 aa17.53■□□□□ 0.4
LINC00643-202ENST00000553426 AKT1S1Q96B36 256 aa17.52■□□□□ 0.4
LINC00643-202ENST00000553426 SPG7Q9UQ90 795 aa17.52■□□□□ 0.4
LINC00643-202ENST00000553426 POLD1P28340 1107 aa17.51■□□□□ 0.39
LINC00643-202ENST00000553426 TNNT2P45379 298 aaPredicted RBP17.51■□□□□ 0.39
LINC00643-202ENST00000553426 ARXQ96QS3 562 aa17.51■□□□□ 0.39
LINC00643-202ENST00000553426 SHANK3Q9BYB0 1731 aa17.51■□□□□ 0.39
LINC00643-202ENST00000553426 FHDC1Q9C0D6 1143 aaPredicted RBP17.51■□□□□ 0.39
LINC00643-202ENST00000553426 PANK3Q9H999 370 aa17.51■□□□□ 0.39
LINC00643-202ENST00000553426 POLKQ9UBT6 870 aa17.51■□□□□ 0.39
LINC00643-202ENST00000553426 NSD2O96028 1365 aa17.51■□□□□ 0.39
LINC00643-202ENST00000553426 KCNQ4P56696 695 aa17.5■□□□□ 0.39
LINC00643-202ENST00000553426 MPRIPQ6WCQ1 1025 aa17.5■□□□□ 0.39
LINC00643-202ENST00000553426 SYT17Q9BSW7 474 aa17.5■□□□□ 0.39
LINC00643-202ENST00000553426 CYP27B1O15528 508 aa17.49■□□□□ 0.39
LINC00643-202ENST00000553426 SGIP1Q9BQI5 828 aa17.49■□□□□ 0.39
LINC00643-202ENST00000553426 SMARCC1Q92922 1105 aaPredicted RBP17.48■□□□□ 0.39
LINC00643-202ENST00000553426 EYA1Q99502 592 aa17.48■□□□□ 0.39
LINC00643-202ENST00000553426 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.48■□□□□ 0.39
LINC00643-202ENST00000553426 PNPLA7Q6ZV29 1317 aa17.47■□□□□ 0.39
LINC00643-202ENST00000553426 MAP2P11137 1827 aaKnown RBP17.47■□□□□ 0.39
LINC00643-202ENST00000553426 MSH5O43196 834 aa17.47■□□□□ 0.39
LINC00643-202ENST00000553426 CHD4Q14839 1912 aa17.47■□□□□ 0.39
LINC00643-202ENST00000553426 LY75O60449 1722 aa17.47■□□□□ 0.39
LINC00643-202ENST00000553426 KNSTRNQ9Y448 316 aa17.46■□□□□ 0.39
LINC00643-202ENST00000553426 ANKRD26Q9UPS8 1709 aa17.46■□□□□ 0.39
LINC00643-202ENST00000553426 NCAPD2Q15021 1401 aa17.46■□□□□ 0.39
LINC00643-202ENST00000553426 PALLDQ8WX93 1383 aa17.45■□□□□ 0.38
LINC00643-202ENST00000553426 EIF4A2Q14240 407 aaKnown RBP17.45■□□□□ 0.38
LINC00643-202ENST00000553426 NKX1-1Q15270 411 aaPredicted RBP17.45■□□□□ 0.38
LINC00643-202ENST00000553426 MORC1Q86VD1 984 aa17.45■□□□□ 0.38
LINC00643-202ENST00000553426 SENP3-EIF4A1A0A087X0R7 540 aa17.44■□□□□ 0.38
LINC00643-202ENST00000553426 IFNL2Q8IZJ0 200 aa17.44■□□□□ 0.38
LINC00643-202ENST00000553426 KLHL34Q8N239 644 aa17.44■□□□□ 0.38
LINC00643-202ENST00000553426 FLAD1Q8NFF5 587 aa17.44■□□□□ 0.38
LINC00643-202ENST00000553426 QSER1Q2KHR3 1735 aa17.44■□□□□ 0.38
LINC00643-202ENST00000553426 TMOD3Q9NYL9 352 aa17.43■□□□□ 0.38
LINC00643-202ENST00000553426 MAP3K5Q99683 1374 aa17.42■□□□□ 0.38
LINC00643-202ENST00000553426 PLEKHG2Q9H7P9 1386 aa17.42■□□□□ 0.38
LINC00643-202ENST00000553426 PKD1L3Q7Z443 1732 aa17.42■□□□□ 0.38
LINC00643-202ENST00000553426 C1QTNF8P60827 252 aa17.42■□□□□ 0.38
LINC00643-202ENST00000553426 PIGBQ92521 554 aa17.41■□□□□ 0.38
LINC00643-202ENST00000553426 PHKG2P15735 406 aa17.4■□□□□ 0.38
LINC00643-202ENST00000553426 COL23A1Q86Y22 540 aaPredicted RBP17.4■□□□□ 0.38
LINC00643-202ENST00000553426 AK7Q96M32 723 aa17.4■□□□□ 0.38
LINC00643-202ENST00000553426 GOLGB1Q14789 3259 aaKnown RBP17.39■□□□□ 0.37
LINC00643-202ENST00000553426 HSP90AB1P08238 724 aaKnown RBP17.39■□□□□ 0.37
LINC00643-202ENST00000553426 PLEKHO1Q53GL0 409 aaPredicted RBP17.39■□□□□ 0.37
LINC00643-202ENST00000553426 IGSF1Q8N6C5 1336 aa17.39■□□□□ 0.37
LINC00643-202ENST00000553426 GPR162Q16538 588 aa17.38■□□□□ 0.37
LINC00643-202ENST00000553426 C5P01031 1676 aa17.37■□□□□ 0.37
LINC00643-202ENST00000553426 AMOTQ4VCS5 1084 aa17.37■□□□□ 0.37
LINC00643-202ENST00000553426 TOGARAM1Q9Y4F4 1720 aa17.36■□□□□ 0.37
LINC00643-202ENST00000553426 ITGB4P16144 1822 aa17.36■□□□□ 0.37
LINC00643-202ENST00000553426 TUBGCP6Q96RT7 1819 aa17.36■□□□□ 0.37
LINC00643-202ENST00000553426 LOC102724428A0A0B4J2F2 783 aa17.36■□□□□ 0.37
LINC00643-202ENST00000553426 SIK1P57059 783 aa17.36■□□□□ 0.37
LINC00643-202ENST00000553426 DCAF5Q96JK2 942 aa17.36■□□□□ 0.37
LINC00643-202ENST00000553426 ERVV-2B6SEH9 535 aa17.35■□□□□ 0.37
LINC00643-202ENST00000553426 ATP6V1AP38606 617 aa17.35■□□□□ 0.37
LINC00643-202ENST00000553426 KIF7Q2M1P5 1343 aa17.35■□□□□ 0.37
LINC00643-202ENST00000553426 MSL1Q68DK7 614 aa17.34■□□□□ 0.37
LINC00643-202ENST00000553426 ZNF530Q6P9A1 599 aaPredicted RBP17.34■□□□□ 0.37
LINC00643-202ENST00000553426 PELP1Q8IZL8 1130 aaKnown RBP17.34■□□□□ 0.37
LINC00643-202ENST00000553426 ASAP1Q9ULH1 1129 aa17.34■□□□□ 0.37
LINC00643-202ENST00000553426 C1orf141Q5JVX7 400 aa17.33■□□□□ 0.36
LINC00643-202ENST00000553426 C4BP0C0L5 1744 aa17.33■□□□□ 0.36
LINC00643-202ENST00000553426 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.32■□□□□ 0.36
LINC00643-202ENST00000553426 PHF14O94880 888 aa17.32■□□□□ 0.36
LINC00643-202ENST00000553426 SSFA2P28290 1259 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms